Wall clock time and date at job start Sun Mar 29 2020 23:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46734 * 2 1 4 4 H 1.09006 * 109.46997 * 175.95396 * 3 2 1 5 5 C 1.50696 * 109.47671 * 55.94744 * 3 2 1 6 6 H 1.07990 * 120.00312 * 244.27151 * 5 3 2 7 7 C 1.37877 * 119.99635 * 64.27491 * 5 3 2 8 8 N 1.31515 * 120.00264 * 8.13369 * 7 5 3 9 9 Si 1.86800 * 119.99977 * 188.13601 * 7 5 3 10 10 H 1.48493 * 109.47175 * 89.99833 * 9 7 5 11 11 H 1.48505 * 109.47306 * 209.99707 * 9 7 5 12 12 H 1.48500 * 109.47174 * 329.99448 * 9 7 5 13 13 N 1.46909 * 109.47021 * 295.94666 * 3 2 1 14 14 C 1.46900 * 111.00213 * 277.11553 * 13 3 2 15 15 C 1.52992 * 109.47297 * 185.35574 * 14 13 3 16 16 H 1.09001 * 109.47283 * 54.99937 * 15 14 13 17 17 C 1.53005 * 109.47382 * 295.00534 * 15 14 13 18 18 C 1.52992 * 109.47382 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47523 * 59.99711 * 18 17 15 20 20 C 1.53001 * 109.47119 * 300.00160 * 19 18 17 21 21 C 1.52998 * 109.47523 * 175.00245 * 15 14 13 22 22 H 1.09001 * 109.47092 * 59.99575 * 21 15 14 23 23 O 1.42900 * 109.46918 * 300.00299 * 21 15 14 24 24 H 1.08997 * 109.47092 * 65.24947 * 1 2 3 25 25 H 1.09005 * 109.46958 * 185.25431 * 1 2 3 26 26 H 1.09007 * 109.46941 * 305.24573 * 1 2 3 27 27 H 1.08997 * 109.46658 * 239.99884 * 2 1 3 28 28 H 1.08997 * 109.47052 * 119.99540 * 2 1 3 29 29 H 0.97003 * 119.99644 * 3.76613 * 8 7 5 30 30 H 1.00895 * 110.99722 * 41.07369 * 13 3 2 31 31 H 1.09003 * 109.47146 * 305.35984 * 14 13 3 32 32 H 1.09006 * 109.46820 * 65.35430 * 14 13 3 33 33 H 1.09001 * 109.46424 * 299.99929 * 17 15 14 34 34 H 1.09003 * 109.47285 * 59.99388 * 17 15 14 35 35 H 1.08996 * 109.47312 * 179.97438 * 18 17 15 36 36 H 1.09006 * 109.47235 * 299.99866 * 18 17 15 37 37 H 1.09001 * 109.47092 * 59.99575 * 19 18 17 38 38 H 1.09002 * 109.47695 * 180.02562 * 19 18 17 39 39 H 1.09002 * 109.47630 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.47384 * 299.99854 * 20 19 18 41 41 H 0.96700 * 114.00590 * 179.97438 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1276 1.4434 0.0725 5 6 1.4574 2.1814 1.1771 6 1 0.7895 3.0144 1.0150 7 6 1.7771 1.7938 2.4611 8 7 2.7097 0.8885 2.6618 9 14 0.8857 2.5547 3.9157 10 1 -0.3176 1.7460 4.2370 11 1 1.7917 2.5828 5.0920 12 1 0.4744 3.9403 3.5745 13 7 1.6318 2.1061 -1.2455 14 6 2.5625 1.7934 -2.3382 15 6 2.1834 2.6044 -3.5788 16 1 2.1518 3.6639 -3.3247 17 6 0.8077 2.1588 -4.0788 18 6 0.4283 2.9702 -5.3191 19 6 1.4689 2.7404 -6.4169 20 6 2.8446 3.1861 -5.9170 21 6 3.2241 2.3740 -4.6764 22 1 3.2557 1.3145 -4.9305 23 8 4.5089 2.7903 -4.2095 24 1 -0.3633 0.4302 -0.9332 25 1 -0.3633 -1.0234 0.0941 26 1 -0.3633 0.5931 0.8393 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.2104 0.5333 1.9107 30 1 0.6859 1.8582 -1.4940 31 1 3.5780 2.0474 -2.0343 32 1 2.5077 0.7295 -2.5688 33 1 0.8393 1.0993 -4.3329 34 1 0.0662 2.3229 -3.2968 35 1 -0.5515 2.6524 -5.6755 36 1 0.3967 4.0296 -5.0645 37 1 1.5006 1.6810 -6.6714 38 1 1.1989 3.3188 -7.3004 39 1 3.5861 3.0220 -6.6989 40 1 2.8129 4.2455 -5.6624 41 1 5.2192 2.6725 -4.8550 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251340936.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:42 Heat of formation + Delta-G solvation = -85.267050 kcal Electronic energy + Delta-G solvation = -18384.459849 eV Core-core repulsion = 15683.655566 eV Total energy + Delta-G solvation = -2700.804282 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.28238 -36.62736 -35.47906 -33.21459 -31.25012 -29.82313 -29.29889 -25.94171 -24.03506 -23.50798 -22.34527 -20.88583 -19.75994 -19.39138 -17.20391 -16.71813 -15.33677 -15.22483 -14.42625 -14.08140 -13.79701 -13.70276 -13.55513 -13.25381 -12.90918 -12.70895 -12.44011 -12.14095 -11.62673 -11.44591 -11.28100 -11.04032 -10.97133 -10.72091 -10.61543 -10.40528 -10.13420 -10.06173 -9.99920 -9.92128 -9.79295 -9.60557 -8.54319 -8.17224 -7.19255 -6.23220 -3.90672 3.49489 3.53447 3.69282 4.22774 4.58243 4.65271 4.68647 4.92998 5.10676 5.15491 5.31623 5.41348 5.46395 5.48649 5.52504 5.64887 5.75791 5.90768 5.97484 6.04817 6.09044 6.13855 6.17780 6.23724 6.27958 6.35180 6.39116 6.63995 6.66704 6.73875 7.07522 7.15850 7.32626 7.37568 7.72853 8.04358 8.37193 8.58489 8.74405 9.01321 9.77124 11.12954 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034183 B = 0.005496 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.912804 B = 5093.834873 C = 5294.364174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.151 4.151 3 C 0.204 3.796 4 H 0.024 0.976 5 C -0.569 4.569 6 H 0.055 0.945 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 1.067 2.933 10 H -0.290 1.290 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.677 5.677 14 C 0.068 3.932 15 C -0.074 4.074 16 H 0.083 0.917 17 C -0.114 4.114 18 C -0.120 4.120 19 C -0.116 4.116 20 C -0.150 4.150 21 C 0.110 3.890 22 H 0.049 0.951 23 O -0.560 6.560 24 H 0.031 0.969 25 H 0.027 0.973 26 H 0.072 0.928 27 H 0.019 0.981 28 H 0.066 0.934 29 H 0.268 0.732 30 H 0.325 0.675 31 H 0.072 0.928 32 H 0.011 0.989 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.918 1.431 -17.217 17.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.191 4.191 3 C 0.095 3.905 4 H 0.042 0.958 5 C -0.608 4.608 6 H 0.073 0.927 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.896 3.104 10 H -0.217 1.217 11 H -0.213 1.213 12 H -0.215 1.215 13 N -0.307 5.307 14 C -0.062 4.062 15 C -0.093 4.093 16 H 0.102 0.898 17 C -0.152 4.152 18 C -0.158 4.158 19 C -0.154 4.154 20 C -0.188 4.188 21 C 0.051 3.949 22 H 0.067 0.933 23 O -0.365 6.365 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.091 0.909 27 H 0.037 0.963 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.090 0.910 32 H 0.029 0.971 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -2.086 2.134 -14.852 15.149 hybrid contribution 0.259 -1.141 -2.482 2.744 sum -1.828 0.993 -17.334 17.458 Atomic orbital electron populations 1.21590 0.96884 0.99046 1.01266 1.22203 0.96037 1.01496 0.99325 1.19318 0.95358 0.88274 0.87521 0.95814 1.21864 1.30640 1.17238 0.91042 0.92705 1.25696 0.96697 0.96113 1.00099 1.70764 1.20909 1.28472 1.35264 0.83574 0.75693 0.75541 0.75577 1.21651 1.21316 1.21520 1.60748 1.04332 1.62672 1.02995 1.21868 0.98241 0.95072 0.91066 1.21129 0.92421 1.02144 0.93648 0.89847 1.21581 0.96892 0.99306 0.97393 1.21562 0.98113 1.00794 0.95333 1.21479 0.94601 1.01181 0.98101 1.22276 0.97394 1.01440 0.97672 1.21846 0.83619 0.96197 0.93234 0.93274 1.86627 1.17380 1.87988 1.44488 0.94984 0.95430 0.90858 0.96274 0.91493 0.92068 0.85636 0.90981 0.97112 0.92398 0.90745 0.92041 0.91730 0.92108 0.92037 0.92183 0.91094 0.78369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.38 37.16 0.35 -2.42 16 2 C -0.15 -3.55 5.47 -26.73 -0.15 -3.69 16 3 C 0.20 5.19 1.96 -68.86 -0.13 5.05 16 4 H 0.02 0.68 7.10 -51.93 -0.37 0.31 16 5 C -0.57 -15.97 7.23 -34.44 -0.25 -16.22 16 6 H 0.05 1.58 7.83 -52.49 -0.41 1.17 16 7 C 0.02 0.49 5.24 -17.82 -0.09 0.40 16 8 N -0.92 -27.61 12.92 55.43 0.72 -26.89 16 9 Si 1.07 25.57 29.91 -169.99 -5.08 20.49 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.68 -14.84 6.17 -107.95 -0.67 -15.51 16 14 C 0.07 1.29 4.87 -3.83 -0.02 1.27 16 15 C -0.07 -1.14 2.14 -90.62 -0.19 -1.34 16 16 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 17 C -0.11 -1.50 4.97 -26.73 -0.13 -1.63 16 18 C -0.12 -1.29 5.92 -26.74 -0.16 -1.45 16 19 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 20 C -0.15 -1.55 5.55 -26.70 -0.15 -1.70 16 21 C 0.11 1.42 2.91 -26.70 -0.08 1.34 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 O -0.56 -7.72 12.56 -35.23 -0.44 -8.17 16 24 H 0.03 0.61 6.63 -51.93 -0.34 0.26 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 1.71 6.90 -51.92 -0.36 1.35 16 27 H 0.02 0.41 7.32 -51.93 -0.38 0.03 16 28 H 0.07 1.74 6.37 -51.93 -0.33 1.41 16 29 H 0.27 8.09 6.09 -40.82 -0.25 7.84 16 30 H 0.32 6.69 5.09 -39.29 -0.20 6.49 16 31 H 0.07 1.54 7.32 -51.93 -0.38 1.16 16 32 H 0.01 0.20 7.37 -51.93 -0.38 -0.18 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.06 6.80 -51.93 -0.35 0.70 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.37 3.29 9.08 45.56 0.41 3.70 16 LS Contribution 309.76 15.07 4.67 4.67 Total: -1.00 -30.81 309.76 -8.34 -39.15 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.37 Total: 7.92 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -1.16 Total: -21.66 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.05 Total: -42.40 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -0.44 Total: -8.17 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.08 Total: 20.49 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.81 -8.34 -39.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251340936.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.119 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds