Wall clock time and date at job start Sun Mar 29 2020 22:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47389 * 2 1 4 4 H 1.09003 * 109.47225 * 305.53252 * 3 2 1 5 5 C 1.50698 * 109.47168 * 185.53125 * 3 2 1 6 6 H 1.07999 * 120.00259 * 242.64844 * 5 3 2 7 7 C 1.37886 * 119.99806 * 62.64336 * 5 3 2 8 8 N 1.31512 * 119.99677 * 194.55587 * 7 5 3 9 9 Si 1.86798 * 119.99809 * 14.55590 * 7 5 3 10 10 H 1.48500 * 109.47088 * 92.02178 * 9 7 5 11 11 H 1.48510 * 109.46692 * 212.01695 * 9 7 5 12 12 H 1.48492 * 109.47143 * 332.01486 * 9 7 5 13 13 N 1.46899 * 109.47128 * 65.53268 * 3 2 1 14 14 C 1.46900 * 111.00046 * 252.79701 * 13 3 2 15 15 H 1.09001 * 109.54467 * 34.00997 * 14 13 3 16 16 C 1.53185 * 109.53812 * 273.74580 * 14 13 3 17 17 C 1.53087 * 109.16102 * 183.15271 * 16 14 13 18 18 O 1.42900 * 109.41749 * 57.60811 * 17 16 14 19 19 C 1.42900 * 114.09815 * 298.84302 * 18 17 16 20 20 H 1.08996 * 109.49302 * 301.16724 * 19 18 17 21 21 C 1.53007 * 109.48167 * 181.13839 * 19 18 17 22 22 C 1.52999 * 109.46737 * 65.05352 * 21 19 18 23 23 C 1.53098 * 109.41549 * 61.15715 * 19 18 17 24 24 H 1.08996 * 109.46936 * 299.02330 * 1 2 3 25 25 H 1.09004 * 109.46727 * 59.01677 * 1 2 3 26 26 H 1.09000 * 109.47192 * 179.01540 * 1 2 3 27 27 H 1.09004 * 109.46651 * 240.00199 * 2 1 3 28 28 H 1.08999 * 109.47231 * 120.00716 * 2 1 3 29 29 H 0.97001 * 119.99562 * 180.02562 * 8 7 5 30 30 H 1.00899 * 111.00119 * 128.83406 * 13 3 2 31 31 H 1.08992 * 109.52049 * 303.06083 * 16 14 13 32 32 H 1.09004 * 109.52160 * 63.24917 * 16 14 13 33 33 H 1.09009 * 109.47919 * 297.62803 * 17 16 14 34 34 H 1.09000 * 109.49270 * 177.59919 * 17 16 14 35 35 H 1.08990 * 109.47077 * 185.05962 * 21 19 18 36 36 H 1.09005 * 109.46802 * 305.05932 * 21 19 18 37 37 H 1.08997 * 109.47498 * 299.99891 * 22 21 19 38 38 H 1.09005 * 109.47002 * 60.00702 * 22 21 19 39 39 H 1.09003 * 109.46471 * 179.97438 * 22 21 19 40 40 H 1.09000 * 109.52055 * 182.48621 * 23 19 18 41 41 H 1.09000 * 109.51989 * 62.29453 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5982 1.9842 -0.8363 5 6 3.5409 1.4446 -0.1369 6 1 4.1548 1.8482 0.6546 7 6 4.1302 0.9312 -1.2729 8 7 5.4184 0.6669 -1.2832 9 14 3.0987 0.6113 -2.7971 10 1 3.1284 1.8085 -3.6751 11 1 3.6504 -0.5554 -3.5320 12 1 1.6978 0.3262 -2.3958 13 7 1.6626 2.0954 1.2606 14 6 0.5833 3.0687 1.0467 15 1 -0.0801 2.7105 0.2595 16 6 1.1836 4.4179 0.6391 17 6 0.0581 5.4456 0.4952 18 8 -0.6596 5.5399 1.7273 19 6 -1.2823 4.3199 2.1346 20 1 -1.9789 3.9919 1.3631 21 6 -2.0408 4.5465 3.4440 22 6 -3.1911 5.5262 3.2039 23 6 -0.2107 3.2468 2.3444 24 1 -0.3633 0.4986 0.8986 25 1 -0.3633 0.5291 -0.8811 26 1 -0.3633 -1.0275 -0.0177 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 5.8331 0.3060 -2.0824 30 1 2.4618 2.5313 1.6956 31 1 1.8850 4.7504 1.4042 32 1 1.7043 4.3122 -0.3127 33 1 -0.6209 5.1324 -0.2980 34 1 0.4832 6.4181 0.2468 35 1 -2.4402 3.5975 3.8013 36 1 -1.3618 4.9591 4.1903 37 1 -2.7916 6.4753 2.8466 38 1 -3.8700 5.1136 2.4576 39 1 -3.7317 5.6873 4.1367 40 1 -0.6871 2.3038 2.6123 41 1 0.4626 3.5559 3.1440 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251468568.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:20 Heat of formation + Delta-G solvation = -67.926917 kcal Electronic energy + Delta-G solvation = -18535.779355 eV Core-core repulsion = 15835.726997 eV Total energy + Delta-G solvation = -2700.052358 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.47686 -36.57580 -33.93652 -33.40604 -31.87016 -29.75659 -29.66821 -26.86848 -24.12691 -23.21729 -22.43878 -21.04045 -20.09063 -19.54960 -16.93477 -16.31049 -15.75945 -15.38480 -14.52219 -14.17658 -13.93116 -13.76881 -13.52978 -13.25098 -12.96085 -12.72926 -12.58374 -11.91274 -11.75451 -11.60667 -11.56743 -11.16487 -10.97240 -10.94407 -10.84626 -10.79402 -10.52693 -10.28686 -9.98120 -9.80593 -9.46285 -9.15945 -9.13998 -8.46783 -7.43392 -6.16181 -4.11994 3.23832 3.34088 3.37136 3.90239 4.37217 4.66719 5.01197 5.07854 5.11840 5.17236 5.22226 5.34618 5.42551 5.47362 5.58460 5.67704 5.82941 5.89862 5.91589 6.01160 6.06067 6.06712 6.11181 6.18381 6.23224 6.27240 6.35928 6.49247 6.57779 6.69913 6.77173 7.03937 7.07828 7.40019 7.44516 7.61588 7.99434 8.34831 8.58192 8.92364 9.49818 10.96765 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034934 B = 0.006167 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.318630 B = 4539.534823 C = 4779.974380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C 0.192 3.808 4 H 0.006 0.994 5 C -0.535 4.535 6 H 0.074 0.926 7 C 0.078 3.922 8 N -0.891 5.891 9 Si 0.861 3.139 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.247 1.247 13 N -0.674 5.674 14 C 0.089 3.911 15 H 0.069 0.931 16 C -0.184 4.184 17 C 0.066 3.934 18 O -0.382 6.382 19 C 0.090 3.910 20 H 0.053 0.947 21 C -0.115 4.115 22 C -0.149 4.149 23 C -0.135 4.135 24 H 0.055 0.945 25 H 0.035 0.965 26 H 0.034 0.966 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.264 0.736 30 H 0.340 0.660 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.074 0.926 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.383 6.817 5.045 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C 0.083 3.917 4 H 0.023 0.977 5 C -0.573 4.573 6 H 0.092 0.908 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.688 3.312 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.171 1.171 13 N -0.304 5.304 14 C -0.022 4.022 15 H 0.087 0.913 16 C -0.223 4.223 17 C -0.011 4.011 18 O -0.301 6.301 19 C 0.032 3.968 20 H 0.071 0.929 21 C -0.152 4.152 22 C -0.206 4.206 23 C -0.174 4.174 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.159 0.841 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.649 6.374 5.237 16.812 hybrid contribution 0.295 0.213 -1.659 1.699 sum -14.353 6.587 3.578 16.193 Atomic orbital electron populations 1.21815 0.98625 0.99412 1.00516 1.21911 0.92769 0.99448 1.00791 1.19452 0.95207 0.90726 0.86300 0.97677 1.21315 0.89583 1.41763 1.04655 0.90757 1.24907 0.94722 0.94139 0.98725 1.69981 1.11080 1.42929 1.28770 0.87277 0.82489 0.77933 0.83507 1.20892 1.21311 1.17116 1.60641 1.12110 1.30856 1.26802 1.21639 0.94518 0.90137 0.95944 0.91270 1.22966 0.98891 0.97133 1.03319 1.22504 0.92990 0.99709 0.85887 1.87859 1.69145 1.32908 1.40211 1.22163 0.93500 0.85022 0.96148 0.92924 1.21532 0.97220 1.00091 0.96383 1.21721 0.97779 1.00112 1.01022 1.22222 0.97738 0.98541 0.98883 0.92614 0.94626 0.94725 0.93126 0.92372 0.92652 0.84076 0.91092 0.90492 0.93705 0.89372 0.90746 0.91198 0.92042 0.93114 0.93051 0.90779 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.05 37.16 0.34 -2.35 16 2 C -0.11 -2.43 4.82 -26.73 -0.13 -2.56 16 3 C 0.19 4.39 1.56 -68.87 -0.11 4.28 16 4 H 0.01 0.13 6.19 -51.93 -0.32 -0.19 16 5 C -0.54 -14.54 9.06 -34.44 -0.31 -14.86 16 6 H 0.07 2.19 7.62 -52.49 -0.40 1.79 16 7 C 0.08 2.20 5.34 -17.82 -0.10 2.11 16 8 N -0.89 -26.76 13.96 55.43 0.77 -25.98 16 9 Si 0.86 20.89 25.74 -169.99 -4.38 16.51 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.25 -5.65 5.34 56.52 0.30 -5.35 16 13 N -0.67 -13.30 5.76 -100.76 -0.58 -13.88 16 14 C 0.09 1.47 1.70 -67.53 -0.11 1.36 16 15 H 0.07 1.20 6.87 -51.93 -0.36 0.84 16 16 C -0.18 -2.92 5.41 -26.59 -0.14 -3.06 16 17 C 0.07 0.91 6.84 37.20 0.25 1.16 16 18 O -0.38 -5.43 9.94 -35.23 -0.35 -5.78 16 19 C 0.09 1.15 2.64 -26.68 -0.07 1.08 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 21 C -0.11 -1.23 5.64 -26.73 -0.15 -1.38 16 22 C -0.15 -1.45 9.81 37.16 0.36 -1.08 16 23 C -0.14 -1.93 5.03 -26.59 -0.13 -2.06 16 24 H 0.05 0.97 7.19 -51.93 -0.37 0.60 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 1.17 4.59 -51.93 -0.24 0.93 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.34 6.97 7.53 -39.29 -0.30 6.67 16 31 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 32 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 33 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.65 7.82 -51.93 -0.41 0.25 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 311.88 15.07 4.70 4.70 Total: -1.00 -28.66 311.88 -7.68 -36.34 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -7.54 Total: 5.46 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -0.30 Total: -17.36 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.19 Total: -39.86 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.35 Total: -5.78 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.38 Total: 16.51 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.66 -7.68 -36.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251468568.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.590 kcal (2) G-P(sol) polarization free energy of solvation -28.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds