Wall clock time and date at job start Sun Mar 29 2020 22:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47389 * 2 1 4 4 H 1.09003 * 109.47225 * 305.53252 * 3 2 1 5 5 C 1.50698 * 109.47168 * 185.53125 * 3 2 1 6 6 H 1.07999 * 120.00259 * 242.64844 * 5 3 2 7 7 C 1.37886 * 119.99806 * 62.64336 * 5 3 2 8 8 N 1.31512 * 119.99677 * 194.55587 * 7 5 3 9 9 Si 1.86798 * 119.99809 * 14.55590 * 7 5 3 10 10 H 1.48500 * 109.47088 * 92.02178 * 9 7 5 11 11 H 1.48510 * 109.46692 * 212.01695 * 9 7 5 12 12 H 1.48492 * 109.47143 * 332.01486 * 9 7 5 13 13 N 1.46899 * 109.47128 * 65.53268 * 3 2 1 14 14 C 1.46900 * 111.00046 * 252.79701 * 13 3 2 15 15 H 1.09001 * 109.54467 * 34.00997 * 14 13 3 16 16 C 1.53185 * 109.53812 * 273.74580 * 14 13 3 17 17 C 1.53087 * 109.16102 * 183.15271 * 16 14 13 18 18 O 1.42900 * 109.41749 * 57.60811 * 17 16 14 19 19 C 1.42900 * 114.09815 * 298.84302 * 18 17 16 20 20 H 1.08996 * 109.49302 * 301.16724 * 19 18 17 21 21 C 1.53007 * 109.48167 * 181.13839 * 19 18 17 22 22 C 1.52999 * 109.46737 * 65.05352 * 21 19 18 23 23 C 1.53098 * 109.41549 * 61.15715 * 19 18 17 24 24 H 1.08996 * 109.46936 * 299.02330 * 1 2 3 25 25 H 1.09004 * 109.46727 * 59.01677 * 1 2 3 26 26 H 1.09000 * 109.47192 * 179.01540 * 1 2 3 27 27 H 1.09004 * 109.46651 * 240.00199 * 2 1 3 28 28 H 1.08999 * 109.47231 * 120.00716 * 2 1 3 29 29 H 0.97001 * 119.99562 * 180.02562 * 8 7 5 30 30 H 1.00899 * 111.00119 * 128.83406 * 13 3 2 31 31 H 1.08992 * 109.52049 * 303.06083 * 16 14 13 32 32 H 1.09004 * 109.52160 * 63.24917 * 16 14 13 33 33 H 1.09009 * 109.47919 * 297.62803 * 17 16 14 34 34 H 1.09000 * 109.49270 * 177.59919 * 17 16 14 35 35 H 1.08990 * 109.47077 * 185.05962 * 21 19 18 36 36 H 1.09005 * 109.46802 * 305.05932 * 21 19 18 37 37 H 1.08997 * 109.47498 * 299.99891 * 22 21 19 38 38 H 1.09005 * 109.47002 * 60.00702 * 22 21 19 39 39 H 1.09003 * 109.46471 * 179.97438 * 22 21 19 40 40 H 1.09000 * 109.52055 * 182.48621 * 23 19 18 41 41 H 1.09000 * 109.51989 * 62.29453 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5982 1.9842 -0.8363 5 6 3.5409 1.4446 -0.1369 6 1 4.1548 1.8482 0.6546 7 6 4.1302 0.9312 -1.2729 8 7 5.4184 0.6669 -1.2832 9 14 3.0987 0.6113 -2.7971 10 1 3.1284 1.8085 -3.6751 11 1 3.6504 -0.5554 -3.5320 12 1 1.6978 0.3262 -2.3958 13 7 1.6626 2.0954 1.2606 14 6 0.5833 3.0687 1.0467 15 1 -0.0801 2.7105 0.2595 16 6 1.1836 4.4179 0.6391 17 6 0.0581 5.4456 0.4952 18 8 -0.6596 5.5399 1.7273 19 6 -1.2823 4.3199 2.1346 20 1 -1.9789 3.9919 1.3631 21 6 -2.0408 4.5465 3.4440 22 6 -3.1911 5.5262 3.2039 23 6 -0.2107 3.2468 2.3444 24 1 -0.3633 0.4986 0.8986 25 1 -0.3633 0.5291 -0.8811 26 1 -0.3633 -1.0275 -0.0177 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 5.8331 0.3060 -2.0824 30 1 2.4618 2.5313 1.6956 31 1 1.8850 4.7504 1.4042 32 1 1.7043 4.3122 -0.3127 33 1 -0.6209 5.1324 -0.2980 34 1 0.4832 6.4181 0.2468 35 1 -2.4402 3.5975 3.8013 36 1 -1.3618 4.9591 4.1903 37 1 -2.7916 6.4753 2.8466 38 1 -3.8700 5.1136 2.4576 39 1 -3.7317 5.6873 4.1367 40 1 -0.6871 2.3038 2.6123 41 1 0.4626 3.5559 3.1440 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251468568.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:19 Heat of formation + Delta-G solvation = -86.721644 kcal Electronic energy + Delta-G solvation = -18536.594356 eV Core-core repulsion = 15835.726997 eV Total energy + Delta-G solvation = -2700.867358 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.65555 -38.14791 -35.11465 -34.81174 -33.79870 -31.25051 -30.70832 -28.64782 -25.33114 -24.44705 -24.10109 -22.07131 -21.51529 -21.15009 -18.91696 -17.36194 -17.19162 -16.94279 -15.87914 -15.63542 -15.34349 -14.90740 -14.82190 -14.72568 -14.47845 -14.07644 -13.93472 -13.56703 -13.34081 -12.80446 -12.69012 -12.64508 -12.55732 -12.40424 -12.05630 -11.96414 -11.83226 -11.66803 -11.56366 -11.27296 -11.08350 -11.01544 -10.61501 -10.39705 -9.05342 -8.34395 -6.34265 1.30953 1.35269 1.45137 2.32349 2.87664 3.00296 3.40884 3.84520 3.93921 4.03087 4.21389 4.25238 4.31472 4.42182 4.47728 4.52835 4.52848 4.59327 4.66425 4.79704 4.86584 4.87160 4.92110 4.99363 5.13078 5.16358 5.20140 5.24132 5.25981 5.33036 5.35600 5.45659 5.50654 5.57052 5.79078 6.03913 6.34412 6.47807 6.67244 6.86383 7.31892 8.82122 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034934 B = 0.006167 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.318630 B = 4539.534823 C = 4779.974380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 C 0.200 3.800 4 H 0.005 0.995 5 C -0.538 4.538 6 H 0.035 0.965 7 C 0.022 3.978 8 N -0.941 5.941 9 Si 0.923 3.077 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.221 1.221 13 N -0.673 5.673 14 C 0.087 3.913 15 H 0.070 0.930 16 C -0.180 4.180 17 C 0.071 3.929 18 O -0.390 6.390 19 C 0.089 3.911 20 H 0.061 0.939 21 C -0.113 4.113 22 C -0.146 4.146 23 C -0.127 4.127 24 H 0.064 0.936 25 H 0.042 0.958 26 H 0.055 0.945 27 H 0.038 0.962 28 H 0.045 0.955 29 H 0.265 0.735 30 H 0.332 0.668 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.503 6.989 4.808 19.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.151 4.151 3 C 0.090 3.910 4 H 0.023 0.977 5 C -0.576 4.576 6 H 0.053 0.947 7 C -0.176 4.176 8 N -0.580 5.580 9 Si 0.747 3.253 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.144 1.144 13 N -0.302 5.302 14 C -0.023 4.023 15 H 0.088 0.912 16 C -0.220 4.220 17 C -0.006 4.006 18 O -0.310 6.310 19 C 0.031 3.969 20 H 0.079 0.921 21 C -0.150 4.150 22 C -0.203 4.203 23 C -0.165 4.165 24 H 0.083 0.917 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.150 0.850 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.801 6.558 5.018 19.623 hybrid contribution 1.335 0.193 -1.482 2.004 sum -16.467 6.751 3.536 18.145 Atomic orbital electron populations 1.21712 0.95284 1.01136 1.01299 1.21842 0.95740 0.97949 0.99613 1.19298 0.92080 0.91981 0.87610 0.97748 1.21635 0.91952 1.40553 1.03441 0.94709 1.25755 0.95770 0.94139 1.01979 1.70118 1.13209 1.44880 1.29788 0.86277 0.82084 0.77732 0.79211 1.20515 1.21322 1.14396 1.60663 1.12342 1.32100 1.25086 1.21745 0.93575 0.89577 0.97450 0.91208 1.22888 0.99526 0.97726 1.01852 1.22508 0.92295 0.99657 0.86182 1.87870 1.69116 1.33629 1.40360 1.22287 0.93016 0.84012 0.97538 0.92065 1.21555 0.97259 1.01225 0.95003 1.21693 0.97498 0.99182 1.01969 1.22148 0.97732 0.99598 0.97030 0.91724 0.93927 0.92586 0.94352 0.93645 0.92594 0.84984 0.92066 0.92447 0.92530 0.87931 0.89167 0.91735 0.93208 0.92486 0.91602 0.90021 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.56 9.05 71.98 0.65 -3.91 16 2 C -0.11 -4.78 4.82 30.60 0.15 -4.64 16 3 C 0.20 9.04 1.56 44.17 0.07 9.11 16 4 H 0.00 0.22 6.19 -2.39 -0.01 0.21 16 5 C -0.54 -30.03 9.06 25.60 0.23 -29.79 16 6 H 0.03 2.16 7.62 -2.91 -0.02 2.14 16 7 C 0.02 1.27 5.34 84.66 0.45 1.73 16 8 N -0.94 -58.30 13.96 21.45 0.30 -58.01 16 9 Si 0.92 43.02 25.74 68.60 1.77 44.78 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.22 -9.31 5.34 99.48 0.53 -8.78 16 13 N -0.67 -26.36 5.76 -472.70 -2.72 -29.08 16 14 C 0.09 2.77 1.70 45.04 0.08 2.85 16 15 H 0.07 2.24 6.87 -2.39 -0.02 2.23 16 16 C -0.18 -5.62 5.41 30.69 0.17 -5.45 16 17 C 0.07 1.80 6.84 72.01 0.49 2.29 16 18 O -0.39 -10.25 9.94 -148.98 -1.48 -11.73 16 19 C 0.09 2.06 2.64 30.63 0.08 2.14 16 20 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 21 C -0.11 -2.11 5.64 30.60 0.17 -1.94 16 22 C -0.15 -2.43 9.81 71.98 0.71 -1.72 16 23 C -0.13 -3.36 5.03 30.68 0.15 -3.21 16 24 H 0.06 2.03 7.19 -2.39 -0.02 2.01 16 25 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.04 1.70 4.59 -2.38 -0.01 1.69 16 28 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 30 H 0.33 13.97 7.53 -89.69 -0.68 13.30 16 31 H 0.06 1.99 8.08 -2.39 -0.02 1.98 16 32 H 0.06 2.00 8.10 -2.39 -0.02 1.98 16 33 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.05 0.94 7.82 -2.39 -0.02 0.92 16 38 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -62.40 311.88 1.39 -61.01 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.13 Total: 25.58 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 3.40 Total: -32.54 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -2.42 Total: -87.09 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -1.48 Total: -11.73 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.77 Total: 44.78 kcal Total: -62.40 1.39 -61.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251468568.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.714 kcal (2) G-P(sol) polarization free energy of solvation -62.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds