Wall clock time and date at job start Sun Mar 29 2020 22:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 N 1.46899 * 109.47254 * 300.00134 * 4 2 1 6 6 C 1.46904 * 111.00029 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.46800 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00575 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99722 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99924 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00036 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47138 * 90.00010 * 11 9 7 13 13 H 1.48502 * 109.46886 * 209.99874 * 11 9 7 14 14 H 1.48505 * 109.47112 * 329.99864 * 11 9 7 15 15 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 16 16 C 1.53181 * 109.54763 * 179.82258 * 15 2 1 17 17 C 1.53092 * 109.15998 * 183.23968 * 16 15 2 18 18 O 1.42904 * 109.49280 * 57.47227 * 17 16 15 19 19 C 1.42903 * 114.09714 * 298.89323 * 18 17 16 20 20 C 1.53090 * 109.41692 * 61.14874 * 19 18 17 21 21 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 22 22 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 26 26 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 27 27 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 28 28 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 29 29 H 1.00908 * 110.99847 * 56.04959 * 5 4 2 30 30 H 1.08995 * 109.47167 * 300.00240 * 6 5 4 31 31 H 1.09003 * 109.46442 * 60.00214 * 6 5 4 32 32 H 0.96998 * 120.00185 * 179.97438 * 10 9 7 33 33 H 1.09004 * 109.54531 * 299.99620 * 15 2 1 34 34 H 1.09003 * 109.51845 * 303.05697 * 16 15 2 35 35 H 1.09003 * 109.52022 * 63.23682 * 16 15 2 36 36 H 1.09005 * 109.40788 * 297.48882 * 17 16 15 37 37 H 1.09001 * 109.48325 * 177.50217 * 17 16 15 38 38 H 1.08998 * 109.47538 * 301.16878 * 19 18 17 39 39 H 1.08999 * 109.48995 * 181.14570 * 19 18 17 40 40 H 1.08996 * 109.52409 * 182.48775 * 20 19 18 41 41 H 1.09000 * 109.51939 * 62.30215 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.5504 -0.0288 2.4487 6 6 2.0209 -0.6953 3.6703 7 6 1.4993 0.0414 4.8771 8 1 0.8798 0.9168 4.7494 9 6 1.8129 -0.4023 6.1443 10 7 2.5668 -1.4686 6.2998 11 14 1.1657 0.5103 7.6402 12 1 -0.1483 -0.0571 8.0360 13 1 2.1265 0.3641 8.7631 14 1 1.0045 1.9493 7.3107 15 6 2.0401 -0.7211 -1.2492 16 6 3.5719 -0.7182 -1.2532 17 6 4.0722 -1.3697 -2.5451 18 8 3.5402 -0.6674 -3.6703 19 6 2.1131 -0.6789 -3.7438 20 6 1.5340 0.0022 -2.5011 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1301 -0.7208 1.2495 28 1 1.6767 -1.7489 1.2492 29 1 0.5438 0.0412 2.4402 30 1 1.6572 -1.7226 3.6869 31 1 3.1108 -0.6954 3.6872 32 1 2.7878 -1.7806 7.1913 33 1 1.6774 -1.7491 -1.2505 34 1 3.9343 0.3084 -1.2003 35 1 3.9394 -1.2799 -0.3943 36 1 3.7447 -2.4089 -2.5772 37 1 5.1611 -1.3306 -2.5739 38 1 1.7600 -1.7090 -3.7915 39 1 1.7906 -0.1424 -4.6361 40 1 0.4456 -0.0447 -2.5338 41 1 1.8540 1.0438 -2.4742 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258965010.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:43 Heat of formation + Delta-G solvation = -71.286224 kcal Electronic energy + Delta-G solvation = -18194.851920 eV Core-core repulsion = 15494.653892 eV Total energy + Delta-G solvation = -2700.198028 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.98841 -37.42492 -34.42340 -32.41830 -31.31251 -30.84610 -27.10762 -27.04196 -25.42529 -24.09722 -23.04139 -21.42496 -20.45138 -18.19690 -16.46730 -16.19834 -16.06788 -15.19000 -14.76316 -14.56650 -14.41982 -14.13713 -13.66346 -13.52060 -12.97261 -12.54695 -12.33421 -12.14036 -11.73420 -11.60479 -11.45596 -11.24849 -11.09132 -10.88581 -10.82721 -10.73577 -10.57873 -10.31230 -10.08198 -9.98234 -9.74160 -9.43915 -9.10335 -8.47075 -7.22775 -6.02334 -4.04146 3.31908 3.37981 3.42651 3.81710 4.43222 4.64984 4.70167 4.82825 4.98715 5.13855 5.25908 5.31797 5.33634 5.34974 5.46548 5.48278 5.55216 5.61224 5.75517 5.89040 5.89981 5.98681 6.04609 6.10118 6.14991 6.22174 6.29231 6.34946 6.38778 6.54142 6.70758 6.85924 7.12693 7.28701 7.44940 7.80234 8.15259 8.43266 8.65176 9.05505 9.60819 11.08846 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047976 B = 0.004505 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.487000 B = 6214.474545 C = 6512.319955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C -0.132 4.132 4 C 0.069 3.931 5 N -0.687 5.687 6 C 0.194 3.806 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.898 3.102 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.273 1.273 15 C -0.076 4.076 16 C -0.156 4.156 17 C 0.061 3.939 18 O -0.387 6.387 19 C 0.061 3.939 20 C -0.153 4.153 21 H 0.063 0.937 22 H 0.052 0.948 23 H 0.048 0.952 24 H 0.051 0.949 25 H 0.042 0.958 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.014 0.986 29 H 0.327 0.673 30 H -0.016 1.016 31 H 0.026 0.974 32 H 0.261 0.739 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.091 0.909 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.365 0.898 -18.197 18.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.055 4.055 3 C -0.189 4.189 4 C -0.061 4.061 5 N -0.318 5.318 6 C 0.067 3.933 7 C -0.551 4.551 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.726 3.274 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.095 4.095 16 C -0.193 4.193 17 C -0.016 4.016 18 O -0.306 6.306 19 C -0.016 4.016 20 C -0.190 4.190 21 H 0.082 0.918 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.032 0.968 29 H 0.144 0.856 30 H 0.002 0.998 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.648 1.339 -18.175 18.236 hybrid contribution -1.007 -0.675 1.210 1.713 sum -1.655 0.664 -16.965 17.058 Atomic orbital electron populations 1.21921 0.95160 1.01241 1.01842 1.20532 0.95142 0.96272 0.93571 1.21820 1.00712 0.95004 1.01396 1.21952 0.99803 0.94117 0.90274 1.60709 1.15181 1.53959 1.01930 1.19533 0.96142 0.91919 0.85705 1.21193 1.31377 1.12260 0.90300 0.92026 1.24993 0.95298 0.95155 0.99152 1.69964 1.37379 1.23822 1.22662 0.86495 0.78494 0.80206 0.82189 1.20762 1.21252 1.19766 1.21174 0.94915 0.99154 0.94290 1.22371 0.96149 1.02774 0.98018 1.22602 0.98696 0.94642 0.85659 1.87900 1.20420 1.76029 1.46204 1.22575 0.81175 0.99664 0.98199 1.22348 1.00913 1.01098 0.94674 0.91761 0.92913 0.93333 0.92974 0.93866 0.91087 0.91726 0.96819 0.85569 0.99846 0.95573 0.92952 0.91599 0.90428 0.90406 0.93526 0.89110 0.93587 0.89316 0.90852 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 7.80 37.16 0.29 -1.58 16 2 C -0.05 -0.76 0.40 -154.51 -0.06 -0.82 16 3 C -0.13 -1.86 7.61 37.16 0.28 -1.57 16 4 C 0.07 1.21 4.30 -3.83 -0.02 1.19 16 5 N -0.69 -14.60 5.70 -115.06 -0.66 -15.26 16 6 C 0.19 5.13 5.44 -4.98 -0.03 5.10 16 7 C -0.51 -14.64 9.32 -34.44 -0.32 -14.96 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 11 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 15 C -0.08 -0.91 1.63 -90.44 -0.15 -1.05 16 16 C -0.16 -1.84 4.70 -26.59 -0.13 -1.97 16 17 C 0.06 0.66 6.84 37.20 0.25 0.91 16 18 O -0.39 -4.67 10.77 -35.23 -0.38 -5.05 16 19 C 0.06 0.60 6.84 37.20 0.25 0.86 16 20 C -0.15 -1.58 4.70 -26.59 -0.13 -1.71 16 21 H 0.06 0.90 6.57 -51.93 -0.34 0.56 16 22 H 0.05 0.59 6.51 -51.93 -0.34 0.25 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.74 6.37 -51.93 -0.33 0.41 16 25 H 0.04 0.53 6.36 -51.93 -0.33 0.20 16 26 H 0.07 1.14 7.60 -51.93 -0.39 0.74 16 27 H 0.06 1.17 6.52 -51.93 -0.34 0.83 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.33 6.69 6.76 -39.29 -0.27 6.42 16 30 H -0.02 -0.46 8.14 -51.93 -0.42 -0.88 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.97 6.28 -51.93 -0.33 0.64 16 35 H 0.08 0.96 6.63 -51.93 -0.34 0.62 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.69 6.62 -51.93 -0.34 0.35 16 41 H 0.08 0.84 6.28 -51.93 -0.33 0.51 16 LS Contribution 307.57 15.07 4.63 4.63 Total: -1.00 -30.12 307.57 -7.55 -37.67 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.03 Total: 1.67 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 0.16 Total: -14.11 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 0.08 Total: -41.61 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.38 Total: -5.05 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.12 -7.55 -37.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258965010.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.615 kcal (2) G-P(sol) polarization free energy of solvation -30.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds