Wall clock time and date at job start Sun Mar 29 2020 22:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 5 5 N 1.46899 * 109.47254 * 300.00134 * 4 2 1 6 6 C 1.46904 * 111.00029 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.46800 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00575 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99722 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99924 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00036 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47138 * 90.00010 * 11 9 7 13 13 H 1.48502 * 109.46886 * 209.99874 * 11 9 7 14 14 H 1.48505 * 109.47112 * 329.99864 * 11 9 7 15 15 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 16 16 C 1.53181 * 109.54763 * 179.82258 * 15 2 1 17 17 C 1.53092 * 109.15998 * 183.23968 * 16 15 2 18 18 O 1.42904 * 109.49280 * 57.47227 * 17 16 15 19 19 C 1.42903 * 114.09714 * 298.89323 * 18 17 16 20 20 C 1.53090 * 109.41692 * 61.14874 * 19 18 17 21 21 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 22 22 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 26 26 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 27 27 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 28 28 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 29 29 H 1.00908 * 110.99847 * 56.04959 * 5 4 2 30 30 H 1.08995 * 109.47167 * 300.00240 * 6 5 4 31 31 H 1.09003 * 109.46442 * 60.00214 * 6 5 4 32 32 H 0.96998 * 120.00185 * 179.97438 * 10 9 7 33 33 H 1.09004 * 109.54531 * 299.99620 * 15 2 1 34 34 H 1.09003 * 109.51845 * 303.05697 * 16 15 2 35 35 H 1.09003 * 109.52022 * 63.23682 * 16 15 2 36 36 H 1.09005 * 109.40788 * 297.48882 * 17 16 15 37 37 H 1.09001 * 109.48325 * 177.50217 * 17 16 15 38 38 H 1.08998 * 109.47538 * 301.16878 * 19 18 17 39 39 H 1.08999 * 109.48995 * 181.14570 * 19 18 17 40 40 H 1.08996 * 109.52409 * 182.48775 * 20 19 18 41 41 H 1.09000 * 109.51939 * 62.30215 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.5504 -0.0288 2.4487 6 6 2.0209 -0.6953 3.6703 7 6 1.4993 0.0414 4.8771 8 1 0.8798 0.9168 4.7494 9 6 1.8129 -0.4023 6.1443 10 7 2.5668 -1.4686 6.2998 11 14 1.1657 0.5103 7.6402 12 1 -0.1483 -0.0571 8.0360 13 1 2.1265 0.3641 8.7631 14 1 1.0045 1.9493 7.3107 15 6 2.0401 -0.7211 -1.2492 16 6 3.5719 -0.7182 -1.2532 17 6 4.0722 -1.3697 -2.5451 18 8 3.5402 -0.6674 -3.6703 19 6 2.1131 -0.6789 -3.7438 20 6 1.5340 0.0022 -2.5011 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1301 -0.7208 1.2495 28 1 1.6767 -1.7489 1.2492 29 1 0.5438 0.0412 2.4402 30 1 1.6572 -1.7226 3.6869 31 1 3.1108 -0.6954 3.6872 32 1 2.7878 -1.7806 7.1913 33 1 1.6774 -1.7491 -1.2505 34 1 3.9343 0.3084 -1.2003 35 1 3.9394 -1.2799 -0.3943 36 1 3.7447 -2.4089 -2.5772 37 1 5.1611 -1.3306 -2.5739 38 1 1.7600 -1.7090 -3.7915 39 1 1.7906 -0.1424 -4.6361 40 1 0.4456 -0.0447 -2.5338 41 1 1.8540 1.0438 -2.4742 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258965010.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:43 Heat of formation + Delta-G solvation = -90.871799 kcal Electronic energy + Delta-G solvation = -18195.701214 eV Core-core repulsion = 15494.653892 eV Total energy + Delta-G solvation = -2701.047323 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.97889 -38.58089 -36.15195 -34.32769 -32.29907 -31.98387 -28.96623 -28.17035 -26.69533 -25.38534 -24.12960 -23.30573 -21.49293 -19.38619 -18.47089 -17.25007 -16.94273 -16.76623 -16.33803 -15.84054 -15.64619 -15.29398 -15.01552 -14.58122 -14.32060 -14.17172 -13.87776 -13.39247 -13.20074 -12.87756 -12.66400 -12.64478 -12.57694 -12.47708 -12.17075 -12.02780 -11.87566 -11.77775 -11.41486 -11.31638 -10.96512 -10.86408 -10.66982 -10.33787 -9.07085 -8.23388 -6.34833 1.40412 1.42322 1.54199 2.39435 3.01943 3.09904 3.50590 3.70403 3.84991 3.93737 4.14567 4.20549 4.24017 4.35789 4.39378 4.49584 4.60957 4.74379 4.79609 4.82917 4.86919 4.90013 4.94404 5.02964 5.08758 5.11092 5.16977 5.18229 5.21974 5.26136 5.30906 5.44751 5.57235 5.61146 5.71679 6.02088 6.31323 6.46106 6.74037 6.90101 7.36484 8.88380 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047976 B = 0.004505 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.487000 B = 6214.474545 C = 6512.319955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.046 4.046 3 C -0.128 4.128 4 C 0.069 3.931 5 N -0.681 5.681 6 C 0.208 3.792 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.001 3.999 10 N -0.935 5.935 11 Si 0.974 3.026 12 H -0.271 1.271 13 H -0.282 1.282 14 H -0.264 1.264 15 C -0.072 4.072 16 C -0.155 4.155 17 C 0.062 3.938 18 O -0.403 6.403 19 C 0.057 3.943 20 C -0.147 4.147 21 H 0.049 0.951 22 H 0.078 0.922 23 H 0.050 0.950 24 H 0.044 0.956 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.008 0.992 29 H 0.334 0.666 30 H -0.044 1.044 31 H -0.004 1.004 32 H 0.265 0.735 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.519 1.735 -19.216 19.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.047 4.047 3 C -0.185 4.185 4 C -0.060 4.060 5 N -0.313 5.313 6 C 0.080 3.920 7 C -0.573 4.573 8 H 0.083 0.917 9 C -0.198 4.198 10 N -0.576 5.576 11 Si 0.798 3.202 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.188 1.188 15 C -0.091 4.091 16 C -0.193 4.193 17 C -0.014 4.014 18 O -0.322 6.322 19 C -0.020 4.020 20 C -0.184 4.184 21 H 0.068 0.932 22 H 0.096 0.904 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.026 0.974 29 H 0.152 0.848 30 H -0.026 1.026 31 H 0.014 0.986 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.073 0.927 39 H 0.125 0.875 40 H 0.107 0.893 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.813 2.180 -19.221 19.429 hybrid contribution -0.618 -0.965 1.479 1.871 sum -2.431 1.215 -17.742 17.949 Atomic orbital electron populations 1.21909 0.94052 1.01605 1.02416 1.20458 0.95955 0.95859 0.92399 1.21770 1.00290 0.95001 1.01427 1.22039 0.99256 0.94123 0.90599 1.60589 1.15639 1.53632 1.01397 1.19183 0.94129 0.90758 0.87884 1.21544 1.31755 1.12604 0.91371 0.91723 1.25974 0.95264 0.95923 1.02591 1.70097 1.38429 1.25351 1.23693 0.85314 0.78084 0.79040 0.77740 1.19617 1.20725 1.18826 1.21129 0.94806 0.99162 0.94050 1.22339 0.96318 1.02264 0.98352 1.22621 0.99300 0.94775 0.84725 1.87884 1.21727 1.76253 1.46369 1.22743 0.80121 1.00487 0.98610 1.22310 1.01802 1.00541 0.93760 0.93155 0.90351 0.93097 0.93655 0.91503 0.93285 0.92756 0.97416 0.84810 1.02607 0.98580 0.92629 0.91499 0.91176 0.91651 0.92732 0.88241 0.92710 0.87492 0.89304 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 7.80 71.98 0.56 -2.88 16 2 C -0.05 -1.24 0.40 -52.18 -0.02 -1.26 16 3 C -0.13 -3.47 7.61 71.98 0.55 -2.92 16 4 C 0.07 2.49 4.30 86.30 0.37 2.86 16 5 N -0.68 -29.68 5.70 -517.93 -2.95 -32.63 16 6 C 0.21 11.47 5.44 85.55 0.47 11.93 16 7 C -0.53 -31.00 9.32 25.60 0.24 -30.76 16 8 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 9 C 0.00 0.03 5.46 84.66 0.46 0.49 16 10 N -0.94 -57.36 13.29 21.45 0.28 -57.07 16 11 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 14 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 15 C -0.07 -1.61 1.63 -10.68 -0.02 -1.63 16 16 C -0.16 -3.58 4.70 30.69 0.14 -3.44 16 17 C 0.06 1.26 6.84 72.01 0.49 1.76 16 18 O -0.40 -8.91 10.77 -148.98 -1.60 -10.51 16 19 C 0.06 0.97 6.84 72.01 0.49 1.46 16 20 C -0.15 -2.62 4.70 30.68 0.14 -2.48 16 21 H 0.05 1.36 6.57 -2.39 -0.02 1.34 16 22 H 0.08 1.50 6.51 -2.39 -0.02 1.49 16 23 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.04 1.28 6.37 -2.39 -0.02 1.26 16 25 H 0.07 1.50 6.36 -2.39 -0.02 1.48 16 26 H 0.05 1.54 7.60 -2.39 -0.02 1.53 16 27 H 0.05 2.05 6.52 -2.39 -0.02 2.03 16 28 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.33 13.81 6.76 -89.69 -0.61 13.21 16 30 H -0.04 -2.59 8.14 -2.39 -0.02 -2.61 16 31 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 32 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 33 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.07 1.72 6.28 -2.39 -0.01 1.70 16 35 H 0.06 1.65 6.63 -2.39 -0.02 1.63 16 36 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.09 1.34 6.62 -2.39 -0.02 1.32 16 41 H 0.07 1.38 6.28 -2.39 -0.01 1.37 16 Total: -1.00 -64.97 307.57 2.03 -62.94 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.39 Total: 17.45 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: 3.88 Total: -26.86 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -2.67 Total: -89.70 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -1.60 Total: -10.51 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -64.97 2.03 -62.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258965010.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.928 kcal (2) G-P(sol) polarization free energy of solvation -64.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds