Wall clock time and date at job start Sun Mar 29 2020 23:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47021 * 2 1 4 4 H 1.08997 * 109.46743 * 174.23975 * 3 2 1 5 5 C 1.50696 * 109.47119 * 54.24038 * 3 2 1 6 6 H 1.07998 * 119.99879 * 239.99673 * 5 3 2 7 7 C 1.37883 * 120.00289 * 60.00035 * 5 3 2 8 8 N 1.31511 * 119.99712 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 119.99978 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47492 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47364 * 120.00264 * 9 7 5 12 12 H 1.48506 * 109.46954 * 239.99976 * 9 7 5 13 13 N 1.46897 * 109.47206 * 294.23877 * 3 2 1 14 14 C 1.46906 * 110.99848 * 275.12258 * 13 3 2 15 15 H 1.08989 * 109.47242 * 34.79876 * 14 13 3 16 16 C 1.53007 * 109.46560 * 274.79791 * 14 13 3 17 17 C 1.52996 * 109.46802 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.47305 * 60.00033 * 17 16 14 19 19 C 1.52994 * 109.46998 * 299.99885 * 18 17 16 20 20 H 1.09002 * 109.47388 * 299.99780 * 19 18 17 21 21 O 1.42906 * 109.47114 * 179.97438 * 19 18 17 22 22 C 1.42898 * 113.99428 * 90.00108 * 21 19 18 23 23 C 1.53003 * 109.46857 * 154.80451 * 14 13 3 24 24 H 1.08994 * 109.47497 * 58.67033 * 1 2 3 25 25 H 1.09003 * 109.46990 * 178.67491 * 1 2 3 26 26 H 1.08996 * 109.47122 * 298.66720 * 1 2 3 27 27 H 1.08996 * 109.47301 * 239.99690 * 2 1 3 28 28 H 1.09007 * 109.47125 * 120.00193 * 2 1 3 29 29 H 0.97004 * 120.00012 * 180.02562 * 8 7 5 30 30 H 1.00908 * 110.99811 * 39.06898 * 13 3 2 31 31 H 1.08994 * 109.47135 * 300.00382 * 16 14 13 32 32 H 1.08994 * 109.47023 * 60.00268 * 16 14 13 33 33 H 1.09001 * 109.47253 * 180.02562 * 17 16 14 34 34 H 1.09002 * 109.47171 * 300.00197 * 17 16 14 35 35 H 1.09002 * 109.46872 * 59.99981 * 18 17 16 36 36 H 1.08996 * 109.46830 * 180.02562 * 18 17 16 37 37 H 1.09000 * 109.46754 * 180.02562 * 22 21 19 38 38 H 1.09006 * 109.47498 * 300.00076 * 22 21 19 39 39 H 1.09000 * 109.47290 * 60.00543 * 22 21 19 40 40 H 1.09000 * 109.46575 * 299.98857 * 23 14 13 41 41 H 1.08994 * 109.47474 * 59.99228 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1251 1.4442 0.1031 5 6 1.4246 2.1928 1.1529 6 1 0.8173 3.0661 0.9662 7 6 1.6370 1.7645 2.4462 8 7 2.3761 0.7008 2.6736 9 14 0.8747 2.6951 3.8753 10 1 0.0944 3.8470 3.3562 11 1 -0.0248 1.7884 4.6330 12 1 1.9492 3.1900 4.7731 13 7 1.6671 2.0937 -1.2629 14 6 2.6536 1.8086 -2.3135 15 1 3.0405 0.7980 -2.1839 16 6 3.8049 2.8118 -2.2176 17 6 4.8320 2.5153 -3.3121 18 6 4.1646 2.6346 -4.6837 19 6 3.0133 1.6315 -4.7795 20 1 3.4003 0.6207 -4.6505 21 8 2.3895 1.7432 -6.0604 22 6 2.9563 0.8926 -7.0590 23 6 1.9864 1.9276 -3.6852 24 1 -0.3634 0.5343 -0.8777 25 1 -0.3633 -1.0274 -0.0238 26 1 -0.3633 0.4930 0.9017 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 2.5252 0.3992 3.5834 30 1 0.7407 1.8177 -1.5523 31 1 3.4179 3.8224 -2.3470 32 1 4.2801 2.7271 -1.2404 33 1 5.6525 3.2297 -3.2436 34 1 5.2191 1.5045 -3.1831 35 1 3.7775 3.6453 -4.8128 36 1 4.8962 2.4229 -5.4634 37 1 2.4282 1.0369 -8.0015 38 1 4.0097 1.1396 -7.1915 39 1 2.8636 -0.1473 -6.7457 40 1 1.1663 1.2128 -3.7535 41 1 1.5994 2.9382 -3.8147 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300214037.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:13 Heat of formation + Delta-G solvation = -69.894616 kcal Electronic energy + Delta-G solvation = -18400.564929 eV Core-core repulsion = 15700.427246 eV Total energy + Delta-G solvation = -2700.137684 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.20965 -37.07180 -35.23130 -32.34436 -30.76658 -29.95270 -27.91205 -26.47237 -25.69571 -23.30653 -22.21445 -21.42560 -19.66543 -18.96837 -16.54876 -15.99916 -15.58270 -15.12512 -14.76691 -14.54487 -14.22483 -13.71217 -13.46506 -12.94160 -12.79065 -12.53964 -12.26012 -11.84927 -11.78524 -11.61448 -11.10247 -10.88753 -10.81356 -10.72370 -10.52375 -10.43817 -10.34224 -10.16317 -9.82371 -9.72172 -9.48137 -9.39089 -8.88820 -8.31302 -7.16979 -5.94594 -3.95454 3.33324 3.41634 3.46869 3.74656 4.47228 4.82859 4.91119 5.14592 5.22229 5.27002 5.36819 5.38638 5.47216 5.52025 5.62726 5.69547 5.75353 5.79588 5.95153 6.13297 6.23394 6.36228 6.36585 6.38809 6.41328 6.53637 6.60036 6.73580 6.85308 6.93700 7.24686 7.32328 7.34931 7.53357 7.74005 7.94184 8.33589 8.60750 8.68414 9.11047 9.68252 11.12646 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.038076 B = 0.005540 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.197792 B = 5052.545844 C = 5371.236949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.216 3.784 4 H 0.034 0.966 5 C -0.486 4.486 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.680 5.680 14 C 0.093 3.907 15 H 0.034 0.966 16 C -0.107 4.107 17 C -0.117 4.117 18 C -0.136 4.136 19 C 0.092 3.908 20 H 0.057 0.943 21 O -0.387 6.387 22 C 0.032 3.968 23 C -0.115 4.115 24 H 0.030 0.970 25 H 0.021 0.979 26 H 0.066 0.934 27 H 0.009 0.991 28 H 0.091 0.909 29 H 0.258 0.742 30 H 0.327 0.673 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.038 0.962 39 H 0.039 0.961 40 H 0.062 0.938 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.727 -0.211 -14.187 14.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.525 4.525 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.311 5.311 14 C -0.018 4.018 15 H 0.052 0.948 16 C -0.145 4.145 17 C -0.155 4.155 18 C -0.174 4.174 19 C 0.034 3.966 20 H 0.075 0.925 21 O -0.306 6.306 22 C -0.065 4.065 23 C -0.153 4.153 24 H 0.049 0.951 25 H 0.040 0.960 26 H 0.085 0.915 27 H 0.028 0.972 28 H 0.110 0.890 29 H 0.067 0.933 30 H 0.146 0.854 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.914 0.422 -13.886 14.195 hybrid contribution -0.296 -0.827 0.636 1.084 sum 2.618 -0.405 -13.251 13.513 Atomic orbital electron populations 1.21562 0.97703 0.97950 1.01267 1.22112 0.95022 1.01305 1.00074 1.19231 0.96024 0.88466 0.85501 0.94848 1.21118 1.30214 1.11402 0.89723 0.92007 1.24909 0.95620 0.95183 0.98695 1.69896 1.39430 1.24187 1.20197 0.86540 0.79002 0.79933 0.82539 1.19757 1.21302 1.21250 1.60872 1.03596 1.63263 1.03386 1.21331 0.93827 0.96706 0.89893 0.94793 1.21545 0.95045 0.99816 0.98090 1.21509 0.98275 1.01516 0.94199 1.22010 0.97274 1.00586 0.97561 1.22154 0.93276 0.98121 0.83017 0.92491 1.87911 1.59115 1.63903 1.19684 1.22739 0.98107 0.93626 0.92045 1.21766 0.97399 1.03075 0.93047 0.95141 0.95983 0.91537 0.97220 0.89026 0.93260 0.85405 0.91542 0.91362 0.91863 0.92364 0.91117 0.92563 0.89995 0.94323 0.94242 0.91957 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.39 37.16 0.35 -2.38 16 2 C -0.15 -3.41 5.48 -26.73 -0.15 -3.55 16 3 C 0.22 5.27 2.14 -68.87 -0.15 5.12 16 4 H 0.03 0.91 7.13 -51.93 -0.37 0.54 16 5 C -0.49 -13.08 7.35 -34.44 -0.25 -13.34 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.53 5.23 -17.82 -0.09 1.44 16 8 N -0.90 -25.27 11.38 55.43 0.63 -24.64 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.68 -14.24 6.04 -100.95 -0.61 -14.85 16 14 C 0.09 1.65 2.29 -67.70 -0.15 1.50 16 15 H 0.03 0.64 7.09 -51.94 -0.37 0.28 16 16 C -0.11 -1.78 5.41 -26.73 -0.14 -1.93 16 17 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 18 C -0.14 -1.72 5.54 -26.73 -0.15 -1.87 16 19 C 0.09 1.26 2.61 -26.76 -0.07 1.19 16 20 H 0.06 0.75 7.79 -51.93 -0.40 0.35 16 21 O -0.39 -5.29 10.35 -35.23 -0.36 -5.66 16 22 C 0.03 0.32 10.82 101.05 1.09 1.41 16 23 C -0.11 -1.77 4.84 -26.75 -0.13 -1.90 16 24 H 0.03 0.59 6.42 -51.93 -0.33 0.26 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 1.56 7.05 -51.93 -0.37 1.20 16 27 H 0.01 0.20 7.36 -51.93 -0.38 -0.18 16 28 H 0.09 2.41 6.25 -51.93 -0.32 2.09 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.33 6.63 6.20 -39.29 -0.24 6.39 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.28 7.44 -51.93 -0.39 0.90 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.63 7.87 -51.93 -0.41 0.22 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.04 0.34 7.87 -51.93 -0.41 -0.06 16 39 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 40 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 41 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 313.44 15.07 4.72 4.72 Total: -1.00 -27.84 313.44 -7.99 -35.83 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -7.34 Total: 4.30 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 0.00 Total: -16.04 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.02 Total: -39.49 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.36 Total: -5.66 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.84 -7.99 -35.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300214037.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.066 kcal (2) G-P(sol) polarization free energy of solvation -27.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds