Wall clock time and date at job start Sun Mar 29 2020 23:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47393 * 2 1 4 4 H 1.09003 * 109.46735 * 304.00343 * 3 2 1 5 5 C 1.50693 * 109.47238 * 184.00376 * 3 2 1 6 6 H 1.08003 * 119.99477 * 239.99929 * 5 3 2 7 7 C 1.37874 * 120.00600 * 59.99663 * 5 3 2 8 8 N 1.31519 * 119.99329 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00367 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46948 * 60.00308 * 9 7 5 11 11 H 1.48507 * 109.47259 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47484 * 300.00416 * 9 7 5 13 13 N 1.46900 * 109.47069 * 64.00030 * 3 2 1 14 14 C 1.46896 * 111.00167 * 203.92784 * 13 3 2 15 15 H 1.09000 * 109.46877 * 325.44668 * 14 13 3 16 16 C 1.53002 * 109.47532 * 85.44631 * 14 13 3 17 17 C 1.53003 * 109.47377 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.46775 * 299.99792 * 17 16 14 19 19 C 1.53002 * 109.46998 * 59.99976 * 18 17 16 20 20 H 1.09001 * 109.47056 * 179.97438 * 19 18 17 21 21 O 1.42909 * 109.47072 * 60.00080 * 19 18 17 22 22 C 1.42900 * 113.99950 * 89.99511 * 21 19 18 23 23 C 1.52998 * 109.47206 * 205.45000 * 14 13 3 24 24 H 1.09003 * 109.47155 * 174.92472 * 1 2 3 25 25 H 1.09003 * 109.47226 * 294.92881 * 1 2 3 26 26 H 1.09002 * 109.47195 * 54.92676 * 1 2 3 27 27 H 1.08990 * 109.47676 * 239.99680 * 2 1 3 28 28 H 1.09008 * 109.47070 * 119.99428 * 2 1 3 29 29 H 0.96998 * 119.99607 * 179.97438 * 8 7 5 30 30 H 1.00903 * 111.00142 * 79.96633 * 13 3 2 31 31 H 1.09008 * 109.46807 * 300.00262 * 16 14 13 32 32 H 1.09000 * 109.47009 * 60.00118 * 16 14 13 33 33 H 1.08997 * 109.46919 * 60.00065 * 17 16 14 34 34 H 1.08992 * 109.46749 * 179.97438 * 17 16 14 35 35 H 1.09000 * 109.47214 * 300.00134 * 18 17 16 36 36 H 1.08999 * 109.46744 * 179.97438 * 18 17 16 37 37 H 1.09000 * 109.46981 * 60.00572 * 22 21 19 38 38 H 1.08998 * 109.46678 * 179.97438 * 22 21 19 39 39 H 1.08999 * 109.47415 * 300.00439 * 22 21 19 40 40 H 1.08992 * 109.47574 * 59.99938 * 23 14 13 41 41 H 1.09000 * 109.46931 * 299.99635 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6193 1.9766 -0.8520 5 6 3.5437 1.4436 -0.0992 6 1 4.1361 1.8928 0.6842 7 6 4.1632 0.8713 -1.1899 8 7 3.4416 0.3249 -2.1441 9 14 6.0270 0.8734 -1.3132 10 1 6.6006 0.1461 -0.1524 11 1 6.4407 0.2014 -2.5712 12 1 6.5216 2.2736 -1.3135 13 7 1.6309 2.1066 1.2448 14 6 1.5796 3.5644 1.0716 15 1 2.3664 3.8765 0.3849 16 6 0.2170 3.9626 0.5008 17 6 0.1639 5.4810 0.3198 18 6 0.3689 6.1634 1.6738 19 6 1.7314 5.7652 2.2445 20 1 1.8777 6.2517 3.2089 21 8 2.7630 6.1740 1.3440 22 6 3.2619 7.4902 1.5906 23 6 1.7844 4.2464 2.4257 24 1 -0.3633 -1.0237 -0.0909 25 1 -0.3634 0.4332 0.9319 26 1 -0.3634 0.5905 -0.8411 27 1 1.8933 -0.5138 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 3.8773 -0.0774 -2.9116 30 1 2.2420 1.8542 2.0071 31 1 0.0712 3.4767 -0.4640 32 1 -0.5698 3.6505 1.1876 33 1 0.9507 5.7927 -0.3671 34 1 -0.8066 5.7645 -0.0872 35 1 -0.4180 5.8516 2.3607 36 1 0.3315 7.2451 1.5448 37 1 3.6762 7.5390 2.5976 38 1 4.0413 7.7250 0.8657 39 1 2.4490 8.2103 1.4969 40 1 2.7551 3.9628 2.8323 41 1 0.9976 3.9343 3.1124 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300214038.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:15 Heat of formation + Delta-G solvation = -71.657896 kcal Electronic energy + Delta-G solvation = -18678.461174 eV Core-core repulsion = 15978.247029 eV Total energy + Delta-G solvation = -2700.214145 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.16839 -36.58968 -34.79237 -32.17040 -31.07472 -29.91445 -28.09869 -26.38913 -25.59250 -22.76214 -22.21511 -21.04960 -19.30192 -19.09138 -16.48594 -16.04291 -15.58798 -15.20324 -14.67552 -14.29203 -14.01214 -13.49138 -13.32639 -12.71121 -12.68879 -12.30641 -12.07344 -11.74944 -11.58175 -11.24681 -11.09965 -11.06523 -10.93426 -10.70411 -10.62020 -10.36715 -10.23474 -9.95039 -9.71698 -9.48091 -9.30183 -9.22136 -8.90247 -8.28187 -7.12090 -5.90746 -4.02859 3.33887 3.38215 3.41471 3.98529 4.46933 4.95112 5.00933 5.08604 5.34195 5.36042 5.39895 5.50955 5.61289 5.72685 5.74933 5.83895 5.89400 5.98468 6.10497 6.23246 6.31103 6.46583 6.51225 6.56851 6.65584 6.73950 6.79500 6.89030 7.12863 7.22777 7.25385 7.43087 7.55660 7.70224 7.86819 8.18618 8.28803 8.45767 8.79609 9.10508 9.64130 11.09170 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020376 B = 0.008090 C = 0.006364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.829329 B = 3460.213879 C = 4398.487778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 C 0.217 3.783 4 H 0.033 0.967 5 C -0.540 4.540 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.688 5.688 14 C 0.098 3.902 15 H 0.057 0.943 16 C -0.102 4.102 17 C -0.113 4.113 18 C -0.137 4.137 19 C 0.092 3.908 20 H 0.053 0.947 21 O -0.372 6.372 22 C 0.031 3.969 23 C -0.115 4.115 24 H 0.022 0.978 25 H 0.046 0.954 26 H 0.036 0.964 27 H 0.089 0.911 28 H 0.029 0.971 29 H 0.260 0.740 30 H 0.325 0.675 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.036 0.964 38 H 0.082 0.918 39 H 0.036 0.964 40 H 0.063 0.937 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.770 10.730 7.502 13.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.109 3.891 4 H 0.051 0.949 5 C -0.580 4.580 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.526 5.526 9 Si 0.715 3.285 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.317 5.317 14 C -0.013 4.013 15 H 0.075 0.925 16 C -0.140 4.140 17 C -0.151 4.151 18 C -0.175 4.175 19 C 0.034 3.966 20 H 0.071 0.929 21 O -0.290 6.290 22 C -0.066 4.066 23 C -0.153 4.153 24 H 0.041 0.959 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.107 0.893 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.141 0.859 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.100 0.900 39 H 0.054 0.946 40 H 0.081 0.919 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.365 10.413 7.044 13.668 hybrid contribution 2.015 0.458 0.033 2.067 sum -3.350 10.870 7.076 13.396 Atomic orbital electron populations 1.21679 0.99064 0.98085 1.00355 1.21500 0.92021 0.99459 1.01536 1.19146 0.92407 0.90909 0.86688 0.94928 1.21852 0.92856 1.37442 1.05802 0.93022 1.24919 0.97791 0.95143 0.95694 1.69873 1.34843 1.38251 1.09584 0.86745 0.86388 0.78150 0.77226 1.20398 1.21321 1.20392 1.60946 1.56422 1.05246 1.09123 1.21200 0.96366 0.89108 0.94579 0.92494 1.21491 0.97781 0.93575 1.01176 1.21425 1.00910 0.96318 0.96480 1.21998 0.97206 0.99637 0.98627 1.22130 0.87283 0.95897 0.91319 0.92927 1.88063 1.54314 1.30986 1.55686 1.22733 0.98337 0.84983 1.00538 1.21829 1.01909 0.92408 0.99156 0.95854 0.93478 0.94515 0.89304 0.95247 0.92965 0.85868 0.92077 0.92506 0.91510 0.92834 0.91361 0.92675 0.94577 0.89976 0.94584 0.91870 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.73 37.15 0.36 -2.47 16 2 C -0.11 -2.61 5.44 -26.73 -0.15 -2.75 16 3 C 0.22 5.45 1.80 -68.87 -0.12 5.32 16 4 H 0.03 0.92 7.15 -51.93 -0.37 0.55 16 5 C -0.54 -14.91 8.21 -34.44 -0.28 -15.19 16 6 H 0.05 1.43 7.76 -52.48 -0.41 1.02 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 8 N -0.89 -25.58 11.30 55.43 0.63 -24.95 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.69 -14.63 5.55 -100.96 -0.56 -15.19 16 14 C 0.10 1.88 2.15 -67.72 -0.15 1.74 16 15 H 0.06 1.32 7.13 -51.93 -0.37 0.95 16 16 C -0.10 -1.78 5.41 -26.73 -0.14 -1.93 16 17 C -0.11 -1.69 5.78 -26.73 -0.15 -1.84 16 18 C -0.14 -1.76 5.63 -26.73 -0.15 -1.91 16 19 C 0.09 1.29 2.92 -26.71 -0.08 1.21 16 20 H 0.05 0.63 7.79 -51.93 -0.40 0.23 16 21 O -0.37 -5.91 9.00 -35.23 -0.32 -6.23 16 22 C 0.03 0.36 10.82 101.05 1.09 1.46 16 23 C -0.12 -1.82 4.93 -26.71 -0.13 -1.95 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.94 7.87 -51.93 -0.41 0.53 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.09 2.42 5.97 -51.93 -0.31 2.11 16 28 H 0.03 0.71 8.14 -51.92 -0.42 0.28 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 30 H 0.32 6.87 8.06 -39.29 -0.32 6.55 16 31 H 0.06 1.19 7.45 -51.92 -0.39 0.81 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.10 7.68 -51.93 -0.40 0.70 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.63 7.87 -51.93 -0.41 0.22 16 37 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.04 0.37 7.87 -51.93 -0.41 -0.04 16 40 H 0.06 1.03 8.12 -51.93 -0.42 0.61 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 317.07 15.07 4.78 4.78 Total: -1.00 -28.71 317.07 -8.04 -36.75 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.55 Total: 4.69 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 0.00 Total: -16.54 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.07 Total: -40.14 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.32 Total: -6.23 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.71 -8.04 -36.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300214038.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.903 kcal (2) G-P(sol) polarization free energy of solvation -28.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds