Wall clock time and date at job start Sun Mar 29 2020 23:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47393 * 2 1 4 4 H 1.09003 * 109.46735 * 304.00343 * 3 2 1 5 5 C 1.50693 * 109.47238 * 184.00376 * 3 2 1 6 6 H 1.08003 * 119.99477 * 239.99929 * 5 3 2 7 7 C 1.37874 * 120.00600 * 59.99663 * 5 3 2 8 8 N 1.31519 * 119.99329 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00367 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46948 * 60.00308 * 9 7 5 11 11 H 1.48507 * 109.47259 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47484 * 300.00416 * 9 7 5 13 13 N 1.46900 * 109.47069 * 64.00030 * 3 2 1 14 14 C 1.46896 * 111.00167 * 203.92784 * 13 3 2 15 15 H 1.09000 * 109.46877 * 325.44668 * 14 13 3 16 16 C 1.53002 * 109.47532 * 85.44631 * 14 13 3 17 17 C 1.53003 * 109.47377 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.46775 * 299.99792 * 17 16 14 19 19 C 1.53002 * 109.46998 * 59.99976 * 18 17 16 20 20 H 1.09001 * 109.47056 * 179.97438 * 19 18 17 21 21 O 1.42909 * 109.47072 * 60.00080 * 19 18 17 22 22 C 1.42900 * 113.99950 * 89.99511 * 21 19 18 23 23 C 1.52998 * 109.47206 * 205.45000 * 14 13 3 24 24 H 1.09003 * 109.47155 * 174.92472 * 1 2 3 25 25 H 1.09003 * 109.47226 * 294.92881 * 1 2 3 26 26 H 1.09002 * 109.47195 * 54.92676 * 1 2 3 27 27 H 1.08990 * 109.47676 * 239.99680 * 2 1 3 28 28 H 1.09008 * 109.47070 * 119.99428 * 2 1 3 29 29 H 0.96998 * 119.99607 * 179.97438 * 8 7 5 30 30 H 1.00903 * 111.00142 * 79.96633 * 13 3 2 31 31 H 1.09008 * 109.46807 * 300.00262 * 16 14 13 32 32 H 1.09000 * 109.47009 * 60.00118 * 16 14 13 33 33 H 1.08997 * 109.46919 * 60.00065 * 17 16 14 34 34 H 1.08992 * 109.46749 * 179.97438 * 17 16 14 35 35 H 1.09000 * 109.47214 * 300.00134 * 18 17 16 36 36 H 1.08999 * 109.46744 * 179.97438 * 18 17 16 37 37 H 1.09000 * 109.46981 * 60.00572 * 22 21 19 38 38 H 1.08998 * 109.46678 * 179.97438 * 22 21 19 39 39 H 1.08999 * 109.47415 * 300.00439 * 22 21 19 40 40 H 1.08992 * 109.47574 * 59.99938 * 23 14 13 41 41 H 1.09000 * 109.46931 * 299.99635 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6193 1.9766 -0.8520 5 6 3.5437 1.4436 -0.0992 6 1 4.1361 1.8928 0.6842 7 6 4.1632 0.8713 -1.1899 8 7 3.4416 0.3249 -2.1441 9 14 6.0270 0.8734 -1.3132 10 1 6.6006 0.1461 -0.1524 11 1 6.4407 0.2014 -2.5712 12 1 6.5216 2.2736 -1.3135 13 7 1.6309 2.1066 1.2448 14 6 1.5796 3.5644 1.0716 15 1 2.3664 3.8765 0.3849 16 6 0.2170 3.9626 0.5008 17 6 0.1639 5.4810 0.3198 18 6 0.3689 6.1634 1.6738 19 6 1.7314 5.7652 2.2445 20 1 1.8777 6.2517 3.2089 21 8 2.7630 6.1740 1.3440 22 6 3.2619 7.4902 1.5906 23 6 1.7844 4.2464 2.4257 24 1 -0.3633 -1.0237 -0.0909 25 1 -0.3634 0.4332 0.9319 26 1 -0.3634 0.5905 -0.8411 27 1 1.8933 -0.5138 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 3.8773 -0.0774 -2.9116 30 1 2.2420 1.8542 2.0071 31 1 0.0712 3.4767 -0.4640 32 1 -0.5698 3.6505 1.1876 33 1 0.9507 5.7927 -0.3671 34 1 -0.8066 5.7645 -0.0872 35 1 -0.4180 5.8516 2.3607 36 1 0.3315 7.2451 1.5448 37 1 3.6762 7.5390 2.5976 38 1 4.0413 7.7250 0.8657 39 1 2.4490 8.2103 1.4969 40 1 2.7551 3.9628 2.8323 41 1 0.9976 3.9343 3.1124 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300214038.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:14 Heat of formation + Delta-G solvation = -89.618044 kcal Electronic energy + Delta-G solvation = -18679.239984 eV Core-core repulsion = 15978.247029 eV Total energy + Delta-G solvation = -2700.992956 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.40264 -38.14114 -36.36018 -34.06681 -32.82982 -31.16263 -29.69919 -27.63871 -27.22783 -24.66056 -23.49568 -22.43562 -21.23478 -20.39825 -18.60594 -17.25586 -16.90567 -16.60065 -16.23227 -15.65118 -15.60808 -15.25744 -14.69043 -14.48879 -14.14052 -13.46366 -13.40777 -13.36902 -13.07780 -13.02029 -12.82216 -12.68397 -12.52564 -12.21289 -12.14117 -12.04453 -11.64383 -11.54060 -11.40670 -11.28559 -11.03636 -10.71131 -10.43998 -10.32419 -8.99813 -8.04077 -6.26059 1.36333 1.37370 1.44971 2.39714 2.98789 3.14521 3.60600 3.85031 3.95349 4.24726 4.36985 4.39619 4.50047 4.53279 4.61665 4.65178 4.71166 4.73761 4.77942 4.83496 4.86089 4.95294 5.03089 5.06999 5.19930 5.28115 5.33096 5.38040 5.43798 5.45728 5.53913 5.60726 5.70055 5.81453 6.15016 6.24618 6.43072 6.45729 6.88671 7.06769 7.44852 8.91827 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020376 B = 0.008090 C = 0.006364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.829329 B = 3460.213879 C = 4398.487778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 C 0.226 3.774 4 H -0.005 1.005 5 C -0.556 4.556 6 H 0.044 0.956 7 C 0.018 3.982 8 N -0.912 5.912 9 Si 0.948 3.052 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.279 1.279 13 N -0.677 5.677 14 C 0.100 3.900 15 H 0.008 0.992 16 C -0.096 4.096 17 C -0.109 4.109 18 C -0.130 4.130 19 C 0.089 3.911 20 H 0.083 0.917 21 O -0.411 6.411 22 C 0.025 3.975 23 C -0.110 4.110 24 H 0.044 0.956 25 H 0.059 0.941 26 H 0.027 0.973 27 H 0.058 0.942 28 H 0.028 0.972 29 H 0.261 0.739 30 H 0.326 0.674 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.361 11.926 9.286 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.117 3.883 4 H 0.013 0.987 5 C -0.596 4.596 6 H 0.063 0.937 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.774 3.226 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.204 1.204 13 N -0.305 5.305 14 C -0.010 4.010 15 H 0.026 0.974 16 C -0.134 4.134 17 C -0.147 4.147 18 C -0.168 4.168 19 C 0.032 3.968 20 H 0.100 0.900 21 O -0.330 6.330 22 C -0.071 4.071 23 C -0.148 4.148 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.142 0.858 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.960 11.620 8.841 15.771 hybrid contribution 2.204 0.109 -0.540 2.272 sum -3.756 11.729 8.301 14.852 Atomic orbital electron populations 1.21527 0.96268 0.99424 1.00632 1.21359 0.94504 0.98371 0.99921 1.18873 0.91050 0.91296 0.87044 0.98741 1.22147 0.94295 1.37312 1.05808 0.93744 1.25661 1.02128 0.94913 0.95448 1.70006 1.36424 1.38724 1.09931 0.85774 0.81230 0.78031 0.77575 1.19518 1.20629 1.20425 1.60923 1.55631 1.06604 1.07353 1.21199 0.95934 0.87853 0.96052 0.97388 1.21425 0.96908 0.95546 0.99568 1.21376 1.01138 0.94285 0.97909 1.21983 0.96992 1.00630 0.97175 1.22233 0.87649 0.94368 0.92584 0.89954 1.88030 1.55119 1.33125 1.56771 1.22907 0.99049 0.83665 1.01445 1.21796 1.02109 0.94008 0.96850 0.93732 0.92191 0.95356 0.92325 0.95305 0.92943 0.85756 0.95351 0.90942 0.93963 0.90829 0.89212 0.90584 0.93061 0.90025 0.92734 0.92885 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 9.73 71.98 0.70 -4.35 16 2 C -0.10 -5.13 5.44 30.59 0.17 -4.96 16 3 C 0.23 11.82 1.80 44.17 0.08 11.89 16 4 H -0.01 -0.32 7.15 -2.39 -0.02 -0.34 16 5 C -0.56 -31.72 8.21 25.60 0.21 -31.51 16 6 H 0.04 2.53 7.76 -2.91 -0.02 2.51 16 7 C 0.02 1.04 5.29 84.65 0.45 1.49 16 8 N -0.91 -54.12 11.30 21.45 0.24 -53.87 16 9 Si 0.95 45.29 29.54 68.60 2.03 47.31 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 13 N -0.68 -29.22 5.55 -473.32 -2.63 -31.85 16 14 C 0.10 3.91 2.15 44.92 0.10 4.01 16 15 H 0.01 0.39 7.13 -2.39 -0.02 0.37 16 16 C -0.10 -3.36 5.41 30.60 0.17 -3.20 16 17 C -0.11 -3.12 5.78 30.60 0.18 -2.94 16 18 C -0.13 -2.91 5.63 30.60 0.17 -2.74 16 19 C 0.09 2.29 2.92 30.61 0.09 2.38 16 20 H 0.08 1.65 7.79 -2.39 -0.02 1.63 16 21 O -0.41 -12.72 9.00 -148.98 -1.34 -14.06 16 22 C 0.03 0.55 10.82 113.37 1.23 1.78 16 23 C -0.11 -3.33 4.93 30.61 0.15 -3.18 16 24 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.06 2.32 7.87 -2.39 -0.02 2.30 16 26 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.06 3.29 5.97 -2.39 -0.01 3.27 16 28 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 30 H 0.33 13.88 8.06 -89.69 -0.72 13.16 16 31 H 0.03 1.14 7.45 -2.38 -0.02 1.13 16 32 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.04 1.41 7.68 -2.39 -0.02 1.39 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 1.43 7.87 -2.39 -0.02 1.41 16 37 H 0.05 0.93 8.08 -2.39 -0.02 0.91 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.05 0.96 7.87 -2.39 -0.02 0.94 16 40 H 0.05 1.69 8.12 -2.39 -0.02 1.68 16 41 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -64.23 317.07 2.23 -62.00 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.25 Total: 21.80 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: 3.68 Total: -31.32 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -2.39 Total: -85.72 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -1.34 Total: -14.06 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -64.23 2.23 -62.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300214038.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.620 kcal (2) G-P(sol) polarization free energy of solvation -64.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds