Wall clock time and date at job start Sun Mar 29 2020 23:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.47002 * 2 1 4 4 H 1.09004 * 109.46521 * 303.65384 * 3 2 1 5 5 C 1.50696 * 109.46832 * 183.65895 * 3 2 1 6 6 H 1.08004 * 120.00108 * 239.99805 * 5 3 2 7 7 C 1.37880 * 120.00039 * 59.99836 * 5 3 2 8 8 N 1.31515 * 120.00188 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99971 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47133 * 60.00013 * 9 7 5 11 11 H 1.48502 * 109.47149 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47097 * 300.00066 * 9 7 5 13 13 N 1.46894 * 109.47205 * 63.65860 * 3 2 1 14 14 C 1.47940 * 110.99703 * 196.32615 * 13 3 2 15 15 C 1.53919 * 113.33173 * 192.18950 * 14 13 3 16 16 C 1.50539 * 112.93994 * 317.75131 * 15 14 13 17 17 C 1.54523 * 108.86641 * 91.74993 * 16 15 14 18 18 C 1.52999 * 109.03828 * 162.21075 * 17 16 15 19 19 O 1.42897 * 108.98621 * 43.29743 * 17 16 15 20 20 C 1.45871 * 111.66690 * 282.77125 * 17 16 15 21 21 C 1.44303 * 111.00313 * 68.91581 * 13 3 2 22 22 H 1.08994 * 109.47007 * 174.78933 * 1 2 3 23 23 H 1.08998 * 109.47078 * 294.79506 * 1 2 3 24 24 H 1.09003 * 109.47234 * 54.78762 * 1 2 3 25 25 H 1.08999 * 109.47110 * 239.99532 * 2 1 3 26 26 H 1.08994 * 109.46862 * 119.99446 * 2 1 3 27 27 H 0.96998 * 120.00085 * 179.97438 * 8 7 5 28 28 H 1.09002 * 108.71260 * 313.18521 * 14 13 3 29 29 H 1.09004 * 108.71657 * 71.31884 * 14 13 3 30 30 H 1.09003 * 108.79226 * 78.64301 * 15 14 13 31 31 H 1.09003 * 108.79082 * 196.97003 * 15 14 13 32 32 H 1.08994 * 109.56965 * 331.93436 * 16 15 14 33 33 H 1.09001 * 109.57256 * 211.56788 * 16 15 14 34 34 H 1.09009 * 109.47354 * 182.15912 * 18 17 16 35 35 H 1.09006 * 109.47416 * 62.16097 * 18 17 16 36 36 H 1.09000 * 109.47394 * 302.15893 * 18 17 16 37 37 H 0.96703 * 113.99643 * 58.91866 * 19 17 16 38 38 H 1.09004 * 108.84643 * 182.31916 * 20 17 16 39 39 H 1.09001 * 108.84293 * 300.67662 * 20 17 16 40 40 H 1.09001 * 109.69645 * 101.64434 * 21 13 3 41 41 H 1.09002 * 109.72629 * 341.07148 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6241 1.9749 -0.8555 5 6 3.5443 1.4435 -0.0907 6 1 4.1324 1.8942 0.6951 7 6 4.1698 0.8690 -1.1768 8 7 3.4538 0.3197 -2.1335 9 14 6.0344 0.8708 -1.2895 10 1 6.6015 0.1459 -0.1241 11 1 6.4551 0.1974 -2.5445 12 1 6.5289 2.2710 -1.2899 13 7 1.6239 2.1091 1.2411 14 6 1.7470 3.5784 1.1208 15 6 1.6144 4.3135 2.4665 16 6 0.5118 3.7619 3.3303 17 6 1.0988 2.6710 4.2538 18 6 0.1305 2.4238 5.4124 19 8 2.3466 3.1284 4.7790 20 6 1.3143 1.4183 3.5382 21 6 2.3195 1.5614 2.3806 22 1 -0.3633 -1.0234 -0.0933 23 1 -0.3633 0.4310 0.9329 24 1 -0.3634 0.5926 -0.8396 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 3.8938 -0.0841 -2.8978 28 1 2.7195 3.8136 0.6882 29 1 0.9693 3.9407 0.4484 30 1 2.5579 4.2308 3.0063 31 1 1.4128 5.3671 2.2728 32 1 -0.2637 3.3277 2.6993 33 1 0.0867 4.5627 3.9355 34 1 0.5555 1.6826 6.0893 35 1 -0.8183 2.0566 5.0210 36 1 -0.0356 3.3560 5.9523 37 1 2.2831 3.9510 5.2835 38 1 1.6885 0.6721 4.2392 39 1 0.3613 1.0740 3.1363 40 1 3.1264 2.2322 2.6757 41 1 2.7290 0.5836 2.1266 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300237976.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:51 Heat of formation + Delta-G solvation = -60.490784 kcal Electronic energy + Delta-G solvation = -19257.090159 eV Core-core repulsion = 16557.360256 eV Total energy + Delta-G solvation = -2699.729903 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.51631 -36.72862 -33.68226 -32.08787 -31.89693 -30.78572 -28.34156 -26.39510 -24.78259 -23.31445 -22.58372 -19.89742 -19.66925 -18.58984 -16.51105 -16.02420 -15.69609 -14.71194 -14.67503 -14.11121 -13.95238 -13.32885 -13.02226 -12.65265 -12.37210 -12.17587 -12.03645 -11.66692 -11.48539 -11.26230 -11.18871 -10.97744 -10.86770 -10.68052 -10.56934 -10.24594 -10.10542 -9.86069 -9.69119 -9.53144 -9.44752 -9.33634 -8.95766 -8.30949 -6.93437 -5.93124 -4.06075 3.31546 3.36259 3.39728 4.44098 4.52828 4.95796 5.05792 5.21512 5.27740 5.35296 5.52814 5.71624 5.76287 5.98961 6.05397 6.07981 6.17414 6.31274 6.35100 6.44097 6.48151 6.50355 6.53190 6.68366 6.70785 6.81467 6.84571 6.93490 7.13202 7.20415 7.23884 7.48881 7.68674 7.84586 7.93347 8.11171 8.26599 8.45606 8.66992 9.05691 9.61220 11.05568 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027470 B = 0.007953 C = 0.007157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.042381 B = 3519.638717 C = 3911.327265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.109 4.109 3 C 0.218 3.782 4 H 0.033 0.967 5 C -0.540 4.540 6 H 0.055 0.945 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.544 5.544 14 C 0.069 3.931 15 C -0.125 4.125 16 C -0.131 4.131 17 C 0.139 3.861 18 C -0.178 4.178 19 O -0.556 6.556 20 C -0.108 4.108 21 C 0.082 3.918 22 H 0.023 0.977 23 H 0.045 0.955 24 H 0.037 0.963 25 H 0.091 0.909 26 H 0.032 0.968 27 H 0.261 0.739 28 H 0.036 0.964 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.364 0.636 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.039 0.961 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.066 4.815 10.822 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.147 4.147 3 C 0.111 3.889 4 H 0.051 0.949 5 C -0.579 4.579 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.526 5.526 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.205 1.205 13 N -0.268 5.268 14 C -0.059 4.059 15 C -0.162 4.162 16 C -0.169 4.169 17 C 0.099 3.901 18 C -0.235 4.235 19 O -0.361 6.361 20 C -0.146 4.146 21 C -0.048 4.048 22 H 0.042 0.958 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.109 0.891 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.209 0.791 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.309 4.079 10.402 12.831 hybrid contribution 1.652 0.694 0.020 1.792 sum -4.657 4.773 10.422 12.373 Atomic orbital electron populations 1.21688 0.98984 0.98195 1.00388 1.21593 0.92111 0.99232 1.01803 1.19271 0.92594 0.90903 0.86087 0.94867 1.21782 0.92815 1.37460 1.05847 0.92724 1.24916 0.97771 0.95158 0.95650 1.69867 1.34903 1.38107 1.09679 0.86756 0.86405 0.78148 0.77278 1.20329 1.21303 1.20473 1.61136 1.58096 1.02475 1.05078 1.22141 0.99857 0.89040 0.94885 1.21367 0.99837 0.98131 0.96905 1.21908 0.99309 0.97483 0.98152 1.20102 0.83164 0.94989 0.91876 1.22587 1.00363 1.01594 0.98973 1.86690 1.32089 1.44450 1.72836 1.20599 1.01921 0.94589 0.97475 1.21407 0.93487 1.00340 0.89523 0.95756 0.93586 0.94347 0.89121 0.94895 0.92928 0.94526 0.92999 0.90967 0.93024 0.90207 0.93170 0.92289 0.91772 0.93029 0.79052 0.92838 0.90404 0.94283 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.72 37.16 0.36 -2.39 16 2 C -0.11 -2.59 5.16 -26.73 -0.14 -2.72 16 3 C 0.22 5.36 1.66 -68.87 -0.11 5.24 16 4 H 0.03 0.91 7.99 -51.93 -0.42 0.50 16 5 C -0.54 -14.57 6.82 -34.44 -0.24 -14.81 16 6 H 0.05 1.50 6.91 -52.48 -0.36 1.14 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 8 N -0.89 -25.10 11.30 55.43 0.63 -24.48 16 9 Si 0.89 21.47 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.54 -11.34 3.40 -228.04 -0.78 -12.11 16 14 C 0.07 1.34 5.27 -2.77 -0.01 1.32 16 15 C -0.12 -1.95 5.22 -27.48 -0.14 -2.09 16 16 C -0.13 -1.81 4.81 -27.16 -0.13 -1.94 16 17 C 0.14 1.95 0.88 -93.19 -0.08 1.87 16 18 C -0.18 -2.03 8.62 37.16 0.32 -1.71 16 19 O -0.56 -7.98 10.20 -35.23 -0.36 -8.34 16 20 C -0.11 -1.79 4.24 -29.59 -0.13 -1.91 16 21 C 0.08 1.65 3.78 -4.70 -0.02 1.63 16 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.88 7.86 -51.93 -0.41 0.47 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.09 2.41 5.98 -51.93 -0.31 2.10 16 26 H 0.03 0.77 6.49 -51.93 -0.34 0.44 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.04 0.80 7.38 -51.93 -0.38 0.42 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.19 5.54 -51.93 -0.29 0.90 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.21 7.78 -51.93 -0.40 0.80 16 33 H 0.05 0.59 8.00 -51.93 -0.42 0.17 16 34 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.50 8.11 -51.93 -0.42 0.08 16 37 H 0.36 3.76 9.02 45.56 0.41 4.17 16 38 H 0.05 0.87 8.12 -51.93 -0.42 0.45 16 39 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 40 H 0.04 0.84 5.90 -51.93 -0.31 0.54 16 41 H 0.07 1.65 5.60 -51.93 -0.29 1.36 16 LS Contribution 303.19 15.07 4.57 4.57 Total: -1.00 -28.06 303.19 -7.82 -35.88 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.44 Total: 3.79 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -0.41 Total: -15.76 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: -0.15 Total: -36.59 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.36 Total: -8.34 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.06 -7.82 -35.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300237976.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.607 kcal (2) G-P(sol) polarization free energy of solvation -28.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds