Wall clock time and date at job start Sun Mar 29 2020 23:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.47002 * 2 1 4 4 H 1.09004 * 109.46521 * 303.65384 * 3 2 1 5 5 C 1.50696 * 109.46832 * 183.65895 * 3 2 1 6 6 H 1.08004 * 120.00108 * 239.99805 * 5 3 2 7 7 C 1.37880 * 120.00039 * 59.99836 * 5 3 2 8 8 N 1.31515 * 120.00188 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99971 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47133 * 60.00013 * 9 7 5 11 11 H 1.48502 * 109.47149 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47097 * 300.00066 * 9 7 5 13 13 N 1.46894 * 109.47205 * 63.65860 * 3 2 1 14 14 C 1.47940 * 110.99703 * 196.32615 * 13 3 2 15 15 C 1.53919 * 113.33173 * 192.18950 * 14 13 3 16 16 C 1.50539 * 112.93994 * 317.75131 * 15 14 13 17 17 C 1.54523 * 108.86641 * 91.74993 * 16 15 14 18 18 C 1.52999 * 109.03828 * 162.21075 * 17 16 15 19 19 O 1.42897 * 108.98621 * 43.29743 * 17 16 15 20 20 C 1.45871 * 111.66690 * 282.77125 * 17 16 15 21 21 C 1.44303 * 111.00313 * 68.91581 * 13 3 2 22 22 H 1.08994 * 109.47007 * 174.78933 * 1 2 3 23 23 H 1.08998 * 109.47078 * 294.79506 * 1 2 3 24 24 H 1.09003 * 109.47234 * 54.78762 * 1 2 3 25 25 H 1.08999 * 109.47110 * 239.99532 * 2 1 3 26 26 H 1.08994 * 109.46862 * 119.99446 * 2 1 3 27 27 H 0.96998 * 120.00085 * 179.97438 * 8 7 5 28 28 H 1.09002 * 108.71260 * 313.18521 * 14 13 3 29 29 H 1.09004 * 108.71657 * 71.31884 * 14 13 3 30 30 H 1.09003 * 108.79226 * 78.64301 * 15 14 13 31 31 H 1.09003 * 108.79082 * 196.97003 * 15 14 13 32 32 H 1.08994 * 109.56965 * 331.93436 * 16 15 14 33 33 H 1.09001 * 109.57256 * 211.56788 * 16 15 14 34 34 H 1.09009 * 109.47354 * 182.15912 * 18 17 16 35 35 H 1.09006 * 109.47416 * 62.16097 * 18 17 16 36 36 H 1.09000 * 109.47394 * 302.15893 * 18 17 16 37 37 H 0.96703 * 113.99643 * 58.91866 * 19 17 16 38 38 H 1.09004 * 108.84643 * 182.31916 * 20 17 16 39 39 H 1.09001 * 108.84293 * 300.67662 * 20 17 16 40 40 H 1.09001 * 109.69645 * 101.64434 * 21 13 3 41 41 H 1.09002 * 109.72629 * 341.07148 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6241 1.9749 -0.8555 5 6 3.5443 1.4435 -0.0907 6 1 4.1324 1.8942 0.6951 7 6 4.1698 0.8690 -1.1768 8 7 3.4538 0.3197 -2.1335 9 14 6.0344 0.8708 -1.2895 10 1 6.6015 0.1459 -0.1241 11 1 6.4551 0.1974 -2.5445 12 1 6.5289 2.2710 -1.2899 13 7 1.6239 2.1091 1.2411 14 6 1.7470 3.5784 1.1208 15 6 1.6144 4.3135 2.4665 16 6 0.5118 3.7619 3.3303 17 6 1.0988 2.6710 4.2538 18 6 0.1305 2.4238 5.4124 19 8 2.3466 3.1284 4.7790 20 6 1.3143 1.4183 3.5382 21 6 2.3195 1.5614 2.3806 22 1 -0.3633 -1.0234 -0.0933 23 1 -0.3633 0.4310 0.9329 24 1 -0.3634 0.5926 -0.8396 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 3.8938 -0.0841 -2.8978 28 1 2.7195 3.8136 0.6882 29 1 0.9693 3.9407 0.4484 30 1 2.5579 4.2308 3.0063 31 1 1.4128 5.3671 2.2728 32 1 -0.2637 3.3277 2.6993 33 1 0.0867 4.5627 3.9355 34 1 0.5555 1.6826 6.0893 35 1 -0.8183 2.0566 5.0210 36 1 -0.0356 3.3560 5.9523 37 1 2.2831 3.9510 5.2835 38 1 1.6885 0.6721 4.2392 39 1 0.3613 1.0740 3.1363 40 1 3.1264 2.2322 2.6757 41 1 2.7290 0.5836 2.1266 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300237976.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:51 Heat of formation + Delta-G solvation = -78.743013 kcal Electronic energy + Delta-G solvation = -19257.881635 eV Core-core repulsion = 16557.360256 eV Total energy + Delta-G solvation = -2700.521379 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.83752 -38.32095 -35.30926 -33.74331 -33.32908 -32.42831 -29.72107 -28.14889 -26.36459 -24.83189 -24.26740 -21.53118 -20.92552 -20.34831 -18.27499 -17.44959 -17.30801 -16.46970 -16.05968 -15.59551 -15.40839 -14.94563 -14.63061 -14.20418 -13.72316 -13.56492 -13.48364 -13.14579 -13.08100 -12.91365 -12.73999 -12.60287 -12.35424 -12.22944 -12.18315 -11.99189 -11.67647 -11.51501 -11.32212 -11.20650 -11.02627 -10.89997 -10.54275 -10.42882 -8.77848 -8.01805 -6.25219 1.35365 1.35990 1.43690 2.38849 3.14168 3.38989 3.59307 3.91327 4.01952 4.09581 4.37016 4.44600 4.54508 4.65878 4.71068 4.77841 4.85120 4.91678 4.94089 4.98821 5.03173 5.07692 5.17122 5.20716 5.25197 5.30967 5.39545 5.45968 5.48784 5.52843 5.60728 5.64518 5.68140 5.83522 6.12043 6.26378 6.46009 6.86375 6.99986 7.06745 7.45388 8.91257 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027470 B = 0.007953 C = 0.007157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.042381 B = 3519.638717 C = 3911.327265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 C 0.223 3.777 4 H -0.001 1.001 5 C -0.550 4.550 6 H 0.042 0.958 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.943 3.057 10 H -0.275 1.275 11 H -0.280 1.280 12 H -0.277 1.277 13 N -0.532 5.532 14 C 0.066 3.934 15 C -0.115 4.115 16 C -0.125 4.125 17 C 0.137 3.863 18 C -0.169 4.169 19 O -0.574 6.574 20 C -0.099 4.099 21 C 0.089 3.911 22 H 0.044 0.956 23 H 0.059 0.941 24 H 0.032 0.968 25 H 0.060 0.940 26 H 0.028 0.972 27 H 0.262 0.738 28 H 0.002 0.998 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.383 0.617 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.021 0.979 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.046 5.619 12.749 15.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 C 0.116 3.884 4 H 0.017 0.983 5 C -0.590 4.590 6 H 0.060 0.940 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.769 3.231 10 H -0.201 1.201 11 H -0.205 1.205 12 H -0.203 1.203 13 N -0.255 5.255 14 C -0.062 4.062 15 C -0.153 4.153 16 C -0.163 4.163 17 C 0.097 3.903 18 C -0.226 4.226 19 O -0.382 6.382 20 C -0.137 4.137 21 C -0.040 4.040 22 H 0.063 0.937 23 H 0.078 0.922 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.021 0.979 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.231 0.769 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.039 0.961 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.294 4.897 12.350 15.156 hybrid contribution 1.989 0.473 -0.592 2.129 sum -5.305 5.370 11.758 13.972 Atomic orbital electron populations 1.21542 0.96065 0.99544 1.00822 1.21417 0.94662 0.98043 1.00021 1.19059 0.91199 0.91454 0.86670 0.98278 1.21991 0.94245 1.37183 1.05537 0.94004 1.25592 1.01742 0.95024 0.95482 1.69986 1.36303 1.38608 1.10012 0.85851 0.81700 0.78090 0.77428 1.20069 1.20514 1.20298 1.61176 1.57390 1.03277 1.03702 1.22244 0.97963 0.88377 0.97616 1.21290 1.00491 0.98881 0.94625 1.21883 0.98074 0.98346 0.97971 1.20042 0.83844 0.93620 0.92815 1.22473 0.99520 1.02882 0.97749 1.86650 1.32398 1.45843 1.73302 1.20511 1.00489 0.96696 0.96048 1.21316 0.94214 0.98009 0.90494 0.93734 0.92229 0.94919 0.92163 0.95289 0.92902 0.97946 0.92886 0.91814 0.90707 0.91205 0.89685 0.92433 0.91180 0.90661 0.76867 0.92537 0.90214 0.96080 0.93896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.91 9.72 71.98 0.70 -4.21 16 2 C -0.10 -5.00 5.16 30.60 0.16 -4.84 16 3 C 0.22 11.41 1.66 44.17 0.07 11.48 16 4 H 0.00 -0.04 7.99 -2.38 -0.02 -0.06 16 5 C -0.55 -30.86 6.82 25.60 0.17 -30.68 16 6 H 0.04 2.40 6.91 -2.91 -0.02 2.38 16 7 C 0.02 1.21 5.30 84.66 0.45 1.66 16 8 N -0.91 -52.93 11.30 21.45 0.24 -52.69 16 9 Si 0.94 44.92 29.54 68.60 2.03 46.94 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 N -0.53 -22.56 3.40 -875.40 -2.98 -25.53 16 14 C 0.07 2.59 5.27 86.41 0.46 3.05 16 15 C -0.12 -3.40 5.22 30.11 0.16 -3.24 16 16 C -0.13 -3.06 4.81 30.32 0.15 -2.91 16 17 C 0.14 3.46 0.88 -12.46 -0.01 3.45 16 18 C -0.17 -3.19 8.62 71.98 0.62 -2.57 16 19 O -0.57 -15.10 10.20 -148.98 -1.52 -16.62 16 20 C -0.10 -3.17 4.24 28.74 0.12 -3.04 16 21 C 0.09 3.64 3.78 87.12 0.33 3.97 16 22 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.06 2.21 7.86 -2.39 -0.02 2.19 16 24 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.06 3.31 5.98 -2.39 -0.01 3.29 16 26 H 0.03 1.39 6.49 -2.39 -0.02 1.38 16 27 H 0.26 14.54 8.31 -92.71 -0.77 13.76 16 28 H 0.00 0.10 7.38 -2.39 -0.02 0.08 16 29 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.06 2.02 5.54 -2.39 -0.01 2.00 16 31 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 1.90 7.78 -2.39 -0.02 1.88 16 33 H 0.08 1.55 8.00 -2.39 -0.02 1.53 16 34 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.07 1.09 8.11 -2.39 -0.02 1.07 16 37 H 0.38 6.64 9.02 -74.05 -0.67 5.97 16 38 H 0.06 1.76 8.12 -2.38 -0.02 1.74 16 39 H 0.08 2.51 8.08 -2.39 -0.02 2.49 16 40 H 0.02 0.93 5.90 -2.39 -0.01 0.91 16 41 H 0.04 2.00 5.60 -2.39 -0.01 1.99 16 Total: -1.00 -62.35 303.19 1.47 -60.89 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.32 Total: 14.89 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: 3.37 Total: -27.88 kcal Atomic # 7 Polarization: -75.48 SS G_CDS: -2.74 Total: -78.22 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -1.52 Total: -16.62 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -62.35 1.47 -60.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300237976.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.858 kcal (2) G-P(sol) polarization free energy of solvation -62.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds