Wall clock time and date at job start Sun Mar 29 2020 23:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47046 * 2 1 4 4 H 1.09002 * 109.47451 * 56.87641 * 3 2 1 5 5 C 1.50699 * 109.47133 * 176.87220 * 3 2 1 6 6 H 1.08004 * 120.00343 * 120.00043 * 5 3 2 7 7 C 1.37884 * 120.00040 * 300.00158 * 5 3 2 8 8 N 1.31515 * 119.99979 * 179.97438 * 7 5 3 9 9 Si 1.86793 * 119.99915 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.47194 * 90.00127 * 9 7 5 11 11 H 1.48502 * 109.47129 * 210.00043 * 9 7 5 12 12 H 1.48501 * 109.47526 * 330.00172 * 9 7 5 13 13 N 1.46898 * 109.47198 * 296.87133 * 3 2 1 14 14 C 1.47626 * 111.00075 * 295.91422 * 13 3 2 15 15 C 1.50824 * 108.04134 * 150.32330 * 14 13 3 16 16 C 1.53815 * 111.62029 * 95.06500 * 15 14 13 17 17 C 1.54179 * 111.96775 * 319.04170 * 16 15 14 18 18 C 1.52999 * 108.85387 * 197.67838 * 17 16 15 19 19 O 1.42902 * 108.84906 * 79.19244 * 17 16 15 20 20 C 1.50800 * 112.54895 * 318.48551 * 17 16 15 21 21 C 1.39780 * 110.99861 * 167.01399 * 13 3 2 22 22 H 1.08997 * 109.46986 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47163 * 299.99826 * 1 2 3 24 24 H 1.09004 * 109.46837 * 59.99833 * 1 2 3 25 25 H 1.08998 * 109.47163 * 240.00174 * 2 1 3 26 26 H 1.08999 * 109.47381 * 119.99692 * 2 1 3 27 27 H 0.96998 * 120.00217 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.74848 * 269.96256 * 14 13 3 29 29 H 1.09004 * 109.74688 * 30.63820 * 14 13 3 30 30 H 1.08996 * 109.04873 * 215.61629 * 15 14 13 31 31 H 1.09000 * 109.04850 * 334.58244 * 15 14 13 32 32 H 1.08996 * 108.98381 * 79.68113 * 16 15 14 33 33 H 1.08995 * 108.98198 * 198.49051 * 16 15 14 34 34 H 1.08998 * 109.47079 * 60.00236 * 18 17 16 35 35 H 1.09004 * 109.47130 * 180.02562 * 18 17 16 36 36 H 1.09006 * 109.47115 * 300.00075 * 18 17 16 37 37 H 0.96700 * 113.99970 * 60.00299 * 19 17 16 38 38 H 1.09001 * 109.61506 * 333.21464 * 20 17 16 39 39 H 1.08994 * 109.50327 * 212.92981 * 20 17 16 40 40 H 1.09004 * 109.02457 * 309.72500 * 21 13 3 41 41 H 1.09001 * 109.01951 * 68.62648 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6317 1.9723 0.8607 5 6 3.5450 1.4432 0.0775 6 1 4.1262 1.8964 -0.7120 7 6 4.1800 0.8654 1.1564 8 7 5.4935 0.8656 1.2238 9 14 3.1748 0.0823 2.5223 10 1 2.9434 -1.3504 2.2075 11 1 3.9125 0.1941 3.8062 12 1 1.8694 0.7806 2.6390 13 7 1.6130 2.1128 -1.2354 14 6 2.2270 1.4806 -2.4198 15 6 1.2820 1.6510 -3.5829 16 6 1.6385 2.8869 -4.4263 17 6 2.0369 4.0895 -3.5475 18 6 1.9458 5.3662 -4.3858 19 8 3.3879 3.9175 -3.1146 20 6 1.1528 4.2377 -2.3349 21 6 1.8011 3.4951 -1.1460 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 5.9402 0.4594 1.9830 28 1 3.1779 1.9638 -2.6439 29 1 2.3891 0.4198 -2.2284 30 1 1.3307 0.7636 -4.2138 31 1 0.2664 1.7618 -3.2028 32 1 2.4703 2.6385 -5.0853 33 1 0.7761 3.1630 -5.0328 34 1 0.9242 5.4935 -4.7440 35 1 2.2261 6.2235 -3.7738 36 1 2.6226 5.2910 -5.2370 37 1 4.0281 3.8603 -3.8370 38 1 0.1725 3.8084 -2.5421 39 1 1.0452 5.2943 -2.0899 40 1 1.3571 3.8547 -0.2177 41 1 2.8700 3.7081 -1.1343 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300237977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:53 Heat of formation + Delta-G solvation = -45.066607 kcal Electronic energy + Delta-G solvation = -19439.438506 eV Core-core repulsion = 16740.377446 eV Total energy + Delta-G solvation = -2699.061060 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.60117 -36.82894 -33.63825 -32.20294 -31.84689 -31.44967 -28.26799 -26.65597 -25.20284 -22.97284 -22.27768 -20.57026 -19.43984 -18.95405 -16.64818 -16.03411 -15.79414 -14.87142 -14.64670 -14.36604 -13.73881 -13.44434 -13.00905 -12.68602 -12.57317 -12.47761 -12.03184 -11.89874 -11.73745 -11.62627 -11.37073 -11.25198 -10.75890 -10.74152 -10.66707 -10.22148 -10.00694 -9.84784 -9.78285 -9.54612 -9.36596 -9.17419 -8.99750 -8.46177 -6.81305 -6.00578 -3.98975 3.31947 3.42820 3.45328 4.46585 4.55930 4.96917 4.98705 5.13693 5.24838 5.30690 5.52191 5.61544 5.73386 5.82296 5.97389 5.99522 6.05119 6.11119 6.13343 6.24304 6.27707 6.29981 6.36268 6.51469 6.60277 6.71117 6.74327 6.78274 6.96305 7.05734 7.13453 7.21835 7.32295 7.42367 7.72769 8.06856 8.36463 8.57159 8.71278 9.07798 9.64176 11.12676 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030226 B = 0.008558 C = 0.007589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.137702 B = 3271.147784 C = 3688.788792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 C 0.186 3.814 4 H 0.032 0.968 5 C -0.534 4.534 6 H 0.080 0.920 7 C 0.070 3.930 8 N -0.901 5.901 9 Si 0.885 3.115 10 H -0.280 1.280 11 H -0.300 1.300 12 H -0.265 1.265 13 N -0.541 5.541 14 C 0.064 3.936 15 C -0.114 4.114 16 C -0.137 4.137 17 C 0.131 3.869 18 C -0.178 4.178 19 O -0.540 6.540 20 C -0.106 4.106 21 C 0.086 3.914 22 H 0.030 0.970 23 H 0.039 0.961 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.261 0.739 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.361 0.639 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.929 4.530 -10.132 14.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C 0.079 3.921 4 H 0.050 0.950 5 C -0.572 4.572 6 H 0.098 0.902 7 C -0.132 4.132 8 N -0.540 5.540 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.228 1.228 12 H -0.190 1.190 13 N -0.264 5.264 14 C -0.063 4.063 15 C -0.152 4.152 16 C -0.175 4.175 17 C 0.091 3.909 18 C -0.236 4.236 19 O -0.346 6.346 20 C -0.144 4.144 21 C -0.044 4.044 22 H 0.050 0.950 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.208 0.792 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.535 4.465 -9.492 14.176 hybrid contribution 0.708 -0.375 0.257 0.841 sum -8.828 4.090 -9.235 13.414 Atomic orbital electron populations 1.21713 0.97540 0.99088 1.01544 1.21956 0.93927 0.99643 1.00363 1.19666 0.94243 0.90172 0.88013 0.94973 1.21725 0.90470 1.37415 1.07626 0.90228 1.25002 0.94655 0.95685 0.97820 1.69924 1.07810 1.45385 1.30857 0.86890 0.80421 0.79830 0.81244 1.20723 1.22805 1.19024 1.59230 1.60391 1.03137 1.03688 1.21728 0.96256 0.99556 0.88796 1.21461 1.01321 0.95523 0.96936 1.22580 1.00804 0.96227 0.97877 1.21004 0.83770 0.92185 0.93947 1.22639 1.01846 0.98919 1.00150 1.86882 1.16063 1.95388 1.36223 1.21621 0.98186 0.99908 0.94674 1.20505 1.00256 0.88690 0.94981 0.95046 0.94157 0.91928 0.92240 0.93827 0.92911 0.91796 0.91451 0.93190 0.91430 0.92526 0.92374 0.92146 0.92047 0.92946 0.79199 0.90912 0.92104 0.93147 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.78 37.16 0.36 -2.27 16 2 C -0.12 -2.68 4.80 -26.73 -0.13 -2.81 16 3 C 0.19 4.42 1.26 -68.87 -0.09 4.34 16 4 H 0.03 0.81 6.83 -51.93 -0.35 0.46 16 5 C -0.53 -14.89 7.89 -34.44 -0.27 -15.17 16 6 H 0.08 2.46 6.78 -52.48 -0.36 2.10 16 7 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 8 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 9 Si 0.89 22.41 24.40 -169.99 -4.15 18.26 16 10 H -0.28 -6.94 6.84 56.52 0.39 -6.55 16 11 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 12 H -0.27 -6.47 6.53 56.52 0.37 -6.10 16 13 N -0.54 -11.05 3.24 -233.38 -0.76 -11.81 16 14 C 0.06 1.23 4.11 -4.52 -0.02 1.21 16 15 C -0.11 -1.75 5.41 -27.40 -0.15 -1.90 16 16 C -0.14 -1.79 5.01 -25.69 -0.13 -1.92 16 17 C 0.13 1.83 0.91 -91.11 -0.08 1.75 16 18 C -0.18 -2.00 8.42 37.16 0.31 -1.69 16 19 O -0.54 -8.79 8.37 -35.23 -0.29 -9.09 16 20 C -0.11 -1.64 5.11 -27.08 -0.14 -1.78 16 21 C 0.09 1.69 4.66 -6.74 -0.03 1.66 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 1.11 7.70 -51.93 -0.40 0.71 16 25 H 0.06 1.30 6.06 -51.93 -0.31 0.99 16 26 H 0.04 1.03 3.23 -51.93 -0.17 0.86 16 27 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 28 H 0.06 1.34 4.81 -51.93 -0.25 1.09 16 29 H 0.07 1.41 5.66 -51.93 -0.29 1.11 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.05 7.25 -51.93 -0.38 0.68 16 32 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 33 H 0.06 0.67 7.96 -51.93 -0.41 0.26 16 34 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 35 H 0.06 0.71 8.01 -51.93 -0.42 0.30 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.36 4.59 8.94 45.56 0.41 5.00 16 38 H 0.07 1.09 7.10 -51.93 -0.37 0.72 16 39 H 0.06 0.86 7.64 -51.93 -0.40 0.47 16 40 H 0.05 1.01 7.76 -51.93 -0.40 0.61 16 41 H 0.05 1.22 5.58 -51.93 -0.29 0.93 16 LS Contribution 291.62 15.07 4.39 4.39 Total: -1.00 -30.45 291.62 -6.59 -37.05 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.11 Total: 4.94 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -0.46 Total: -16.62 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.02 Total: -38.93 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.29 Total: -9.09 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.15 Total: 18.26 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.45 -6.59 -37.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300237977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.022 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds