Wall clock time and date at job start Sun Mar 29 2020 23:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47151 * 2 1 4 4 H 1.09004 * 109.46822 * 177.50043 * 3 2 1 5 5 C 1.50695 * 109.47373 * 57.50274 * 3 2 1 6 6 H 1.07999 * 120.00087 * 244.18191 * 5 3 2 7 7 C 1.37885 * 120.00223 * 64.17695 * 5 3 2 8 8 N 1.31518 * 119.99452 * 9.67240 * 7 5 3 9 9 Si 1.86795 * 120.00348 * 189.66649 * 7 5 3 10 10 H 1.48495 * 109.47481 * 270.00499 * 9 7 5 11 11 H 1.48499 * 109.46927 * 30.00267 * 9 7 5 12 12 H 1.48501 * 109.46862 * 150.00005 * 9 7 5 13 13 N 1.46898 * 109.47077 * 297.50212 * 3 2 1 14 14 C 1.46903 * 110.99851 * 273.81804 * 13 3 2 15 15 C 1.52995 * 109.46962 * 185.19640 * 14 13 3 16 16 H 1.09002 * 109.47452 * 305.00081 * 15 14 13 17 17 C 1.52996 * 109.47323 * 65.00320 * 15 14 13 18 18 C 1.53000 * 109.47532 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47330 * 300.00145 * 18 17 15 20 20 C 1.52996 * 109.46931 * 59.99487 * 19 18 17 21 21 H 1.09004 * 109.47351 * 180.02562 * 20 19 18 22 22 O 1.42906 * 109.47272 * 60.00350 * 20 19 18 23 23 C 1.53000 * 109.47532 * 300.00389 * 20 19 18 24 24 H 1.09002 * 109.47362 * 305.23990 * 1 2 3 25 25 H 1.09003 * 109.46535 * 65.23590 * 1 2 3 26 26 H 1.08999 * 109.47225 * 185.23272 * 1 2 3 27 27 H 1.09003 * 109.47433 * 239.99551 * 2 1 3 28 28 H 1.08998 * 109.46945 * 119.99791 * 2 1 3 29 29 H 0.97000 * 119.99945 * 356.94298 * 8 7 5 30 30 H 1.00896 * 111.00027 * 37.77183 * 13 3 2 31 31 H 1.08995 * 109.47379 * 305.20003 * 14 13 3 32 32 H 1.09001 * 109.46824 * 65.19786 * 14 13 3 33 33 H 1.09004 * 109.47351 * 300.00050 * 17 15 14 34 34 H 1.09002 * 109.47052 * 59.99516 * 17 15 14 35 35 H 1.09002 * 109.47191 * 179.97438 * 18 17 15 36 36 H 1.09001 * 109.46950 * 60.00359 * 18 17 15 37 37 H 1.09002 * 109.46769 * 299.99905 * 19 18 17 38 38 H 1.09000 * 109.47094 * 179.97438 * 19 18 17 39 39 H 0.96704 * 113.99930 * 59.99197 * 22 20 19 40 40 H 1.09001 * 109.46950 * 299.99641 * 23 20 19 41 41 H 1.09002 * 109.47191 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4427 0.0448 5 6 1.4878 2.1706 1.1983 6 1 0.8173 3.0059 1.0608 7 6 1.8386 1.7702 2.4702 8 7 2.7954 0.8840 2.6402 9 14 0.9550 2.4866 3.9519 10 1 1.6650 3.7081 4.4089 11 1 -0.4386 2.8355 3.5762 12 1 0.9361 1.4855 5.0486 13 7 1.6002 2.1173 -1.2285 14 6 2.5451 1.8781 -2.3276 15 6 2.1249 2.6983 -3.5489 16 1 1.0916 2.4648 -3.8054 17 6 2.2464 4.1893 -3.2282 18 6 1.8269 5.0096 -4.4496 19 6 2.7361 4.6665 -5.6313 20 6 2.6147 3.1754 -5.9520 21 1 3.2628 2.9307 -6.7936 22 8 1.2600 2.8694 -6.2888 23 6 3.0342 2.3551 -4.7305 24 1 -0.3634 0.5930 0.8393 25 1 -0.3632 0.4305 -0.9332 26 1 -0.3633 -1.0234 0.0937 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.2239 0.4792 1.8699 30 1 0.6675 1.8304 -1.4846 31 1 3.5466 2.1756 -2.0171 32 1 2.5438 0.8185 -2.5836 33 1 1.5989 4.4338 -2.3860 34 1 3.2797 4.4228 -2.9716 35 1 1.9130 6.0719 -4.2210 36 1 0.7936 4.7763 -4.7065 37 1 3.7694 4.8998 -5.3743 38 1 2.4369 5.2505 -6.5016 39 1 0.9263 3.3544 -7.0560 40 1 4.0675 2.5884 -4.4736 41 1 2.9481 1.2928 -4.9592 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300371838.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:50 Heat of formation + Delta-G solvation = -84.637030 kcal Electronic energy + Delta-G solvation = -18296.341732 eV Core-core repulsion = 15595.564769 eV Total energy + Delta-G solvation = -2700.776963 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.25125 -36.82691 -35.14970 -32.84658 -31.27102 -30.10960 -29.23505 -26.04716 -23.92867 -23.43182 -22.31074 -20.86529 -19.69507 -19.37876 -16.92310 -16.56358 -15.62149 -14.89548 -14.70867 -14.21894 -13.85924 -13.62503 -13.49629 -13.09892 -12.71756 -12.39858 -12.28980 -12.09674 -11.72782 -11.44460 -11.32662 -11.01489 -10.80685 -10.72200 -10.64659 -10.30642 -10.11163 -10.06327 -9.93265 -9.82940 -9.74993 -9.57856 -8.61583 -8.12578 -7.18087 -6.24707 -3.91533 3.48802 3.52319 3.68010 4.21766 4.58215 4.73373 4.76498 4.89447 5.19031 5.28209 5.45324 5.51110 5.51687 5.60096 5.64702 5.76788 5.88828 6.00268 6.07919 6.12220 6.15607 6.18045 6.20817 6.34633 6.38531 6.43827 6.52052 6.73950 6.80820 6.84495 7.06327 7.11993 7.31177 7.35426 7.59795 8.04037 8.37102 8.56084 8.74418 9.00801 9.76463 11.11822 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035590 B = 0.005324 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.550669 B = 5258.007220 C = 5571.171318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.151 4.151 3 C 0.204 3.796 4 H 0.022 0.978 5 C -0.569 4.569 6 H 0.055 0.945 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 1.068 2.932 10 H -0.290 1.290 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.674 5.674 14 C 0.062 3.938 15 C -0.075 4.075 16 H 0.072 0.928 17 C -0.104 4.104 18 C -0.116 4.116 19 C -0.151 4.151 20 C 0.107 3.893 21 H 0.048 0.952 22 O -0.561 6.561 23 C -0.108 4.108 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.027 0.973 27 H 0.019 0.981 28 H 0.066 0.934 29 H 0.268 0.732 30 H 0.326 0.674 31 H 0.060 0.940 32 H 0.013 0.987 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.371 0.629 40 H 0.073 0.927 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.918 4.622 -16.303 16.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.190 4.190 3 C 0.095 3.905 4 H 0.040 0.960 5 C -0.607 4.607 6 H 0.073 0.927 7 C -0.187 4.187 8 N -0.555 5.555 9 Si 0.897 3.103 10 H -0.217 1.217 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.305 5.305 14 C -0.068 4.068 15 C -0.094 4.094 16 H 0.090 0.910 17 C -0.141 4.141 18 C -0.153 4.153 19 C -0.189 4.189 20 C 0.048 3.952 21 H 0.066 0.934 22 O -0.366 6.366 23 C -0.146 4.146 24 H 0.090 0.910 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.038 0.962 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.145 0.855 31 H 0.079 0.921 32 H 0.031 0.969 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.217 0.783 40 H 0.091 0.909 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.608 4.823 -13.933 14.757 hybrid contribution -0.034 -0.626 -2.451 2.530 sum -0.641 4.197 -16.384 16.925 Atomic orbital electron populations 1.21592 0.96831 0.99107 1.01364 1.22211 0.96078 1.01443 0.99315 1.19317 0.95008 0.88186 0.87958 0.96017 1.21848 1.31108 1.16917 0.90876 0.92683 1.25706 0.95887 0.96577 1.00534 1.70781 1.21677 1.28626 1.34424 0.83558 0.75544 0.75776 0.75400 1.21691 1.21498 1.21257 1.60705 1.04057 1.62446 1.03254 1.21974 0.97440 0.95750 0.91621 1.21012 0.99630 0.95634 0.93127 0.90959 1.21450 1.01600 0.93803 0.97297 1.21478 0.99574 0.99217 0.95053 1.22247 1.01088 0.96478 0.99054 1.21775 0.83048 0.93884 0.96480 0.93405 1.86579 1.28460 1.69145 1.52397 1.21586 0.99569 0.99521 0.93908 0.90955 0.94758 0.95360 0.96226 0.91577 0.92072 0.85531 0.92118 0.96899 0.90166 0.92833 0.92608 0.91718 0.91277 0.92416 0.78319 0.90891 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.38 37.16 0.35 -2.45 16 2 C -0.15 -3.52 5.47 -26.73 -0.15 -3.67 16 3 C 0.20 5.09 1.96 -68.87 -0.13 4.96 16 4 H 0.02 0.60 7.10 -51.93 -0.37 0.24 16 5 C -0.57 -15.76 7.31 -34.44 -0.25 -16.01 16 6 H 0.05 1.57 7.83 -52.49 -0.41 1.16 16 7 C 0.02 0.46 5.21 -17.82 -0.09 0.37 16 8 N -0.92 -27.45 13.07 55.43 0.72 -26.72 16 9 Si 1.07 25.43 29.91 -169.99 -5.09 20.34 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.67 -14.48 5.66 -107.96 -0.61 -15.09 16 14 C 0.06 1.15 4.90 -3.82 -0.02 1.13 16 15 C -0.08 -1.15 2.23 -90.62 -0.20 -1.35 16 16 H 0.07 1.20 7.68 -51.93 -0.40 0.80 16 17 C -0.10 -1.55 5.09 -26.73 -0.14 -1.69 16 18 C -0.12 -1.40 5.78 -26.73 -0.15 -1.56 16 19 C -0.15 -1.53 5.64 -26.73 -0.15 -1.68 16 20 C 0.11 1.16 3.77 -26.73 -0.10 1.06 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 22 O -0.56 -6.40 11.97 -35.23 -0.42 -6.82 16 23 C -0.11 -1.39 4.94 -26.73 -0.13 -1.53 16 24 H 0.07 1.68 6.95 -51.93 -0.36 1.32 16 25 H 0.03 0.66 6.55 -51.93 -0.34 0.32 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.02 0.42 7.58 -51.93 -0.39 0.03 16 28 H 0.07 1.70 6.32 -51.93 -0.33 1.37 16 29 H 0.27 8.00 5.93 -40.82 -0.24 7.75 16 30 H 0.33 6.81 6.54 -39.29 -0.26 6.56 16 31 H 0.06 1.17 7.92 -51.93 -0.41 0.76 16 32 H 0.01 0.24 7.60 -51.93 -0.39 -0.15 16 33 H 0.08 1.39 7.75 -51.93 -0.40 0.98 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.82 7.68 -51.93 -0.40 0.42 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.37 2.62 9.08 45.56 0.41 3.04 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 311.28 15.07 4.69 4.69 Total: -1.00 -30.08 311.28 -8.35 -38.43 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -6.47 Total: 7.60 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -1.17 Total: -22.43 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.11 Total: -41.81 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.42 Total: -6.82 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.09 Total: 20.34 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.08 -8.35 -38.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300371838.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.210 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds