Wall clock time and date at job start Sun Mar 29 2020 23:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47151 * 2 1 4 4 H 1.09004 * 109.46822 * 177.50043 * 3 2 1 5 5 C 1.50695 * 109.47373 * 57.50274 * 3 2 1 6 6 H 1.07999 * 120.00087 * 244.18191 * 5 3 2 7 7 C 1.37885 * 120.00223 * 64.17695 * 5 3 2 8 8 N 1.31518 * 119.99452 * 9.67240 * 7 5 3 9 9 Si 1.86795 * 120.00348 * 189.66649 * 7 5 3 10 10 H 1.48495 * 109.47481 * 270.00499 * 9 7 5 11 11 H 1.48499 * 109.46927 * 30.00267 * 9 7 5 12 12 H 1.48501 * 109.46862 * 150.00005 * 9 7 5 13 13 N 1.46898 * 109.47077 * 297.50212 * 3 2 1 14 14 C 1.46903 * 110.99851 * 273.81804 * 13 3 2 15 15 C 1.52995 * 109.46962 * 185.19640 * 14 13 3 16 16 H 1.09002 * 109.47452 * 305.00081 * 15 14 13 17 17 C 1.52996 * 109.47323 * 65.00320 * 15 14 13 18 18 C 1.53000 * 109.47532 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47330 * 300.00145 * 18 17 15 20 20 C 1.52996 * 109.46931 * 59.99487 * 19 18 17 21 21 H 1.09004 * 109.47351 * 180.02562 * 20 19 18 22 22 O 1.42906 * 109.47272 * 60.00350 * 20 19 18 23 23 C 1.53000 * 109.47532 * 300.00389 * 20 19 18 24 24 H 1.09002 * 109.47362 * 305.23990 * 1 2 3 25 25 H 1.09003 * 109.46535 * 65.23590 * 1 2 3 26 26 H 1.08999 * 109.47225 * 185.23272 * 1 2 3 27 27 H 1.09003 * 109.47433 * 239.99551 * 2 1 3 28 28 H 1.08998 * 109.46945 * 119.99791 * 2 1 3 29 29 H 0.97000 * 119.99945 * 356.94298 * 8 7 5 30 30 H 1.00896 * 111.00027 * 37.77183 * 13 3 2 31 31 H 1.08995 * 109.47379 * 305.20003 * 14 13 3 32 32 H 1.09001 * 109.46824 * 65.19786 * 14 13 3 33 33 H 1.09004 * 109.47351 * 300.00050 * 17 15 14 34 34 H 1.09002 * 109.47052 * 59.99516 * 17 15 14 35 35 H 1.09002 * 109.47191 * 179.97438 * 18 17 15 36 36 H 1.09001 * 109.46950 * 60.00359 * 18 17 15 37 37 H 1.09002 * 109.46769 * 299.99905 * 19 18 17 38 38 H 1.09000 * 109.47094 * 179.97438 * 19 18 17 39 39 H 0.96704 * 113.99930 * 59.99197 * 22 20 19 40 40 H 1.09001 * 109.46950 * 299.99641 * 23 20 19 41 41 H 1.09002 * 109.47191 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4427 0.0448 5 6 1.4878 2.1706 1.1983 6 1 0.8173 3.0059 1.0608 7 6 1.8386 1.7702 2.4702 8 7 2.7954 0.8840 2.6402 9 14 0.9550 2.4866 3.9519 10 1 1.6650 3.7081 4.4089 11 1 -0.4386 2.8355 3.5762 12 1 0.9361 1.4855 5.0486 13 7 1.6002 2.1173 -1.2285 14 6 2.5451 1.8781 -2.3276 15 6 2.1249 2.6983 -3.5489 16 1 1.0916 2.4648 -3.8054 17 6 2.2464 4.1893 -3.2282 18 6 1.8269 5.0096 -4.4496 19 6 2.7361 4.6665 -5.6313 20 6 2.6147 3.1754 -5.9520 21 1 3.2628 2.9307 -6.7936 22 8 1.2600 2.8694 -6.2888 23 6 3.0342 2.3551 -4.7305 24 1 -0.3634 0.5930 0.8393 25 1 -0.3632 0.4305 -0.9332 26 1 -0.3633 -1.0234 0.0937 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.2239 0.4792 1.8699 30 1 0.6675 1.8304 -1.4846 31 1 3.5466 2.1756 -2.0171 32 1 2.5438 0.8185 -2.5836 33 1 1.5989 4.4338 -2.3860 34 1 3.2797 4.4228 -2.9716 35 1 1.9130 6.0719 -4.2210 36 1 0.7936 4.7763 -4.7065 37 1 3.7694 4.8998 -5.3743 38 1 2.4369 5.2505 -6.5016 39 1 0.9263 3.3544 -7.0560 40 1 4.0675 2.5884 -4.4736 41 1 2.9481 1.2928 -4.9592 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300371838.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:49 Heat of formation + Delta-G solvation = -105.170762 kcal Electronic energy + Delta-G solvation = -18297.232141 eV Core-core repulsion = 15595.564769 eV Total energy + Delta-G solvation = -2701.667372 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.30283 -38.54078 -36.34440 -34.50618 -32.96597 -31.40438 -30.44787 -27.90473 -25.70462 -25.17977 -23.33117 -22.09374 -21.44703 -20.63828 -18.74865 -17.64845 -16.85167 -16.37043 -15.91925 -15.71501 -15.44712 -15.33371 -14.97829 -14.67866 -14.27152 -13.76413 -13.57235 -13.28628 -13.14641 -13.00817 -12.74130 -12.61985 -12.41936 -12.06793 -11.97377 -11.90054 -11.86296 -11.70924 -11.60727 -11.30858 -10.96534 -10.64561 -10.50929 -10.28495 -8.98686 -8.50896 -6.18965 1.55263 1.63465 1.81274 2.60632 3.26037 3.44542 3.48557 3.76671 3.91634 4.00471 4.19151 4.29896 4.33558 4.38103 4.43769 4.51926 4.55595 4.60780 4.68871 4.71956 4.81614 4.90041 4.93712 5.05792 5.10844 5.13030 5.19460 5.27822 5.30455 5.38208 5.41087 5.52551 5.57407 5.62330 6.01617 6.22603 6.57329 6.78166 6.82516 7.00271 7.56924 8.85182 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035590 B = 0.005324 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.550669 B = 5258.007220 C = 5571.171318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.143 4.143 3 C 0.207 3.793 4 H -0.012 1.012 5 C -0.574 4.574 6 H 0.044 0.956 7 C -0.030 4.030 8 N -0.941 5.941 9 Si 1.112 2.888 10 H -0.280 1.280 11 H -0.271 1.271 12 H -0.286 1.286 13 N -0.677 5.677 14 C 0.065 3.935 15 C -0.064 4.064 16 H 0.061 0.939 17 C -0.102 4.102 18 C -0.111 4.111 19 C -0.146 4.146 20 C 0.110 3.890 21 H 0.072 0.928 22 O -0.581 6.581 23 C -0.109 4.109 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.034 0.966 28 H 0.038 0.962 29 H 0.256 0.744 30 H 0.331 0.669 31 H 0.047 0.953 32 H 0.013 0.987 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.390 0.610 40 H 0.080 0.920 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.647 5.375 -18.076 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.183 4.183 3 C 0.098 3.902 4 H 0.005 0.995 5 C -0.613 4.613 6 H 0.063 0.937 7 C -0.227 4.227 8 N -0.579 5.579 9 Si 0.935 3.065 10 H -0.206 1.206 11 H -0.196 1.196 12 H -0.211 1.211 13 N -0.307 5.307 14 C -0.065 4.065 15 C -0.083 4.083 16 H 0.080 0.920 17 C -0.140 4.140 18 C -0.148 4.148 19 C -0.183 4.183 20 C 0.051 3.949 21 H 0.090 0.910 22 O -0.389 6.389 23 C -0.147 4.147 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.150 0.850 31 H 0.065 0.935 32 H 0.031 0.969 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.239 0.761 40 H 0.098 0.902 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.345 5.589 -15.750 16.766 hybrid contribution 0.209 -0.862 -1.954 2.146 sum -1.136 4.727 -17.704 18.359 Atomic orbital electron populations 1.21500 0.94860 1.00361 1.01401 1.22070 0.97738 0.99885 0.98604 1.19113 0.92803 0.89375 0.88900 0.99459 1.22080 1.30477 1.16590 0.92116 0.93745 1.27015 0.95773 0.96347 1.03599 1.70897 1.23080 1.30066 1.33888 0.82991 0.75499 0.75471 0.72539 1.20592 1.19634 1.21142 1.60603 1.04837 1.62092 1.03191 1.22022 0.96137 0.96405 0.91896 1.20882 0.99549 0.95260 0.92568 0.92012 1.21391 1.00619 0.94105 0.97880 1.21419 0.99840 0.99050 0.94516 1.22225 1.00813 0.96355 0.98922 1.21746 0.83395 0.93703 0.96027 0.91022 1.86531 1.28710 1.69915 1.53744 1.21602 0.99364 0.99906 0.93859 0.93132 0.92854 0.93057 0.94750 0.94363 0.93358 0.84991 0.93463 0.96925 0.93185 0.93335 0.91791 0.92116 0.90791 0.89758 0.76077 0.90182 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 9.38 71.98 0.68 -4.48 16 2 C -0.14 -6.76 5.47 30.59 0.17 -6.59 16 3 C 0.21 10.64 1.96 44.17 0.09 10.72 16 4 H -0.01 -0.72 7.10 -2.39 -0.02 -0.74 16 5 C -0.57 -32.42 7.31 25.60 0.19 -32.23 16 6 H 0.04 2.56 7.83 -2.91 -0.02 2.54 16 7 C -0.03 -1.70 5.21 84.66 0.44 -1.26 16 8 N -0.94 -57.59 13.07 21.45 0.28 -57.31 16 9 Si 1.11 51.25 29.91 68.60 2.05 53.30 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 13 N -0.68 -29.53 5.66 -495.46 -2.81 -32.33 16 14 C 0.07 2.43 4.90 86.30 0.42 2.85 16 15 C -0.06 -1.92 2.23 -10.80 -0.02 -1.95 16 16 H 0.06 2.01 7.68 -2.39 -0.02 1.99 16 17 C -0.10 -3.02 5.09 30.59 0.16 -2.87 16 18 C -0.11 -2.48 5.78 30.59 0.18 -2.30 16 19 C -0.15 -2.48 5.64 30.59 0.17 -2.30 16 20 C 0.11 2.06 3.77 30.59 0.12 2.17 16 21 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 22 O -0.58 -11.62 11.97 -148.98 -1.78 -13.41 16 23 C -0.11 -2.64 4.94 30.59 0.15 -2.49 16 24 H 0.05 2.32 6.95 -2.39 -0.02 2.30 16 25 H 0.05 1.99 6.55 -2.39 -0.02 1.97 16 26 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.03 1.49 7.58 -2.39 -0.02 1.47 16 28 H 0.04 2.01 6.32 -2.39 -0.02 1.99 16 29 H 0.26 15.89 5.93 -92.71 -0.55 15.34 16 30 H 0.33 13.80 6.54 -89.70 -0.59 13.21 16 31 H 0.05 1.87 7.92 -2.39 -0.02 1.85 16 32 H 0.01 0.47 7.60 -2.39 -0.02 0.45 16 33 H 0.05 1.76 7.75 -2.38 -0.02 1.74 16 34 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.42 7.68 -2.39 -0.02 1.40 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.39 4.24 9.08 -74.05 -0.67 3.57 16 40 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -65.64 311.28 0.43 -65.21 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -0.04 Total: 25.27 kcal Atomic # 6 Polarization: -43.45 SS G_CDS: 2.73 Total: -40.73 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -2.53 Total: -89.65 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -1.78 Total: -13.41 kcal Atomic # 14 Polarization: 51.25 SS G_CDS: 2.05 Total: 53.30 kcal Total: -65.64 0.43 -65.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300371838.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.958 kcal (2) G-P(sol) polarization free energy of solvation -65.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds