Wall clock time and date at job start Sun Mar 29 2020 22:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47361 * 2 1 4 4 H 1.09006 * 109.46786 * 55.00503 * 3 2 1 5 5 O 1.42896 * 109.47609 * 295.00476 * 3 2 1 6 6 C 1.53000 * 109.47408 * 174.99665 * 3 2 1 7 7 H 1.08993 * 109.45685 * 300.50125 * 6 3 2 8 8 C 1.53037 * 109.45611 * 60.46833 * 6 3 2 9 9 C 1.53124 * 109.27803 * 179.19790 * 8 6 3 10 10 C 1.53121 * 109.15610 * 302.34446 * 9 8 6 11 11 C 1.53034 * 109.28037 * 57.65456 * 10 9 8 12 12 N 1.46842 * 109.46317 * 180.51665 * 6 3 2 13 13 C 1.46904 * 110.99809 * 54.15386 * 12 6 3 14 14 C 1.52996 * 109.46823 * 190.64363 * 13 12 6 15 15 C 1.50707 * 109.47132 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99487 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00117 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00213 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99634 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47409 * 60.00135 * 19 17 15 21 21 H 1.48504 * 109.46855 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47187 * 299.99436 * 19 17 15 23 23 H 1.08996 * 109.47364 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47202 * 300.00352 * 1 2 3 25 25 H 1.09007 * 109.46908 * 59.99330 * 1 2 3 26 26 H 1.09000 * 109.46843 * 240.00527 * 2 1 3 27 27 H 1.08996 * 109.47260 * 120.00371 * 2 1 3 28 28 H 0.96706 * 113.99643 * 299.99862 * 5 3 2 29 29 H 1.08997 * 109.50540 * 59.25511 * 8 6 3 30 30 H 1.09004 * 109.50928 * 299.13688 * 8 6 3 31 31 H 1.08999 * 109.52715 * 182.44279 * 9 8 6 32 32 H 1.08990 * 109.52354 * 62.24902 * 9 8 6 33 33 H 1.08999 * 109.50161 * 177.59699 * 10 9 8 34 34 H 1.09000 * 109.50411 * 297.70802 * 10 9 8 35 35 H 1.09002 * 109.46322 * 60.83597 * 11 10 9 36 36 H 1.08998 * 109.46344 * 180.80141 * 11 10 9 37 37 H 1.08997 * 109.46598 * 310.64594 * 13 12 6 38 38 H 1.08995 * 109.47156 * 70.64315 * 13 12 6 39 39 H 1.08997 * 109.47877 * 300.00075 * 14 13 12 40 40 H 1.09004 * 109.47268 * 59.99835 * 14 13 12 41 41 H 0.96996 * 120.00413 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6620 2.0815 -1.2209 6 6 3.5648 1.4443 0.1258 7 1 3.8532 0.9491 1.0529 8 6 4.1752 0.6975 -1.0623 9 6 5.7017 0.7191 -0.9429 10 6 6.1805 2.1723 -0.8831 11 6 5.5119 2.8764 0.2997 12 7 4.0531 2.8291 0.1382 13 6 3.3821 3.6145 1.1828 14 6 3.7126 5.0968 0.9976 15 6 3.0238 5.9027 2.0688 16 1 2.4119 5.4070 2.8079 17 6 3.1747 7.2727 2.1051 18 7 3.9194 7.8763 1.2048 19 14 2.3215 8.2713 3.4333 20 1 2.7916 7.8230 4.7687 21 1 2.6421 9.7102 3.2536 22 1 0.8529 8.0748 3.3338 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.0142 1.6543 -2.0138 29 1 3.8760 1.1840 -1.9907 30 1 3.8249 -0.3347 -1.0624 31 1 6.1419 0.2259 -1.8095 32 1 6.0033 0.1985 -0.0341 33 1 7.2627 2.1938 -0.7551 34 1 5.9128 2.6820 -1.8087 35 1 5.7912 2.3745 1.2262 36 1 5.8398 3.9152 0.3366 37 1 2.3042 3.4706 1.1094 38 1 3.7268 3.2851 2.1629 39 1 4.7905 5.2408 1.0708 40 1 3.3679 5.4263 0.0174 41 1 4.0260 8.8401 1.2306 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304126250.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:37 Heat of formation + Delta-G solvation = -71.257715 kcal Electronic energy + Delta-G solvation = -18517.202131 eV Core-core repulsion = 15817.005338 eV Total energy + Delta-G solvation = -2700.196792 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.58432 -36.59183 -34.15035 -32.70810 -32.44194 -30.63524 -29.05929 -26.11332 -24.86447 -23.38449 -22.15464 -20.68784 -20.11921 -19.24408 -16.63869 -16.01368 -15.57701 -15.19539 -14.90623 -14.51339 -14.21433 -13.89997 -13.63272 -13.06030 -12.83392 -12.45713 -12.38976 -12.06118 -11.93230 -11.76275 -11.18193 -11.08235 -11.00432 -10.86795 -10.84315 -10.63936 -10.52914 -10.45202 -9.91105 -9.63942 -9.42324 -9.21014 -9.02204 -8.25798 -7.58687 -5.93255 -3.95180 3.37204 3.41260 3.43774 4.25327 4.51770 4.74311 4.79919 4.94785 5.05712 5.11580 5.18179 5.25641 5.40404 5.42432 5.58306 5.63560 5.70726 5.80749 5.86935 5.89597 5.94715 6.02879 6.07317 6.09011 6.21665 6.27466 6.32911 6.37218 6.49715 6.61723 6.63645 7.08843 7.60998 7.67918 7.86140 7.98786 8.02073 8.18314 8.51061 9.11921 9.67740 11.18190 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022577 B = 0.006568 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.928405 B = 4262.143089 C = 5185.290115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.156 4.156 3 C 0.110 3.890 4 H 0.103 0.897 5 O -0.540 6.540 6 C 0.053 3.947 7 H 0.037 0.963 8 C -0.115 4.115 9 C -0.117 4.117 10 C -0.116 4.116 11 C 0.054 3.946 12 N -0.522 5.522 13 C 0.060 3.940 14 C 0.031 3.969 15 C -0.520 4.520 16 H 0.052 0.948 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.891 3.109 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.364 0.636 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.021 0.979 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.014 0.986 39 H 0.014 0.986 40 H 0.026 0.974 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.102 -16.985 -4.411 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.194 4.194 3 C 0.050 3.950 4 H 0.120 0.880 5 O -0.344 6.344 6 C -0.057 4.057 7 H 0.055 0.945 8 C -0.153 4.153 9 C -0.155 4.155 10 C -0.154 4.154 11 C -0.074 4.074 12 N -0.246 5.246 13 C -0.067 4.067 14 C -0.006 4.006 15 C -0.559 4.559 16 H 0.070 0.930 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.719 3.281 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.211 0.789 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.040 0.960 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.032 0.968 39 H 0.033 0.967 40 H 0.044 0.956 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.257 -16.189 -4.499 16.805 hybrid contribution 0.145 -0.159 1.285 1.302 sum -0.113 -16.348 -3.215 16.662 Atomic orbital electron populations 1.21694 0.95234 1.00949 1.02636 1.22288 0.97004 0.97785 1.02312 1.22077 0.92291 0.91814 0.88800 0.87973 1.86669 1.75873 1.57047 1.14831 1.22264 0.95420 0.90821 0.97170 0.94541 1.21658 0.95670 0.98975 0.98966 1.21539 0.95635 0.97257 1.01053 1.21596 0.98900 0.95087 0.99849 1.22117 0.88239 1.01541 0.95502 1.61954 1.04165 1.08930 1.49570 1.22405 0.97972 0.96791 0.89484 1.19055 0.96583 0.87498 0.97490 1.21167 1.29895 0.91938 1.12940 0.92995 1.24978 0.95429 0.97905 0.95953 1.69962 1.39126 1.09464 1.34736 0.86680 0.80119 0.79075 0.82233 1.20380 1.21290 1.20234 0.93242 0.92716 0.91981 0.91642 0.91540 0.78934 0.91091 0.91982 0.92298 0.92695 0.92151 0.91121 0.96045 0.89520 0.91422 0.96813 0.96733 0.95585 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.81 37.16 0.36 -1.22 16 2 C -0.16 -1.70 5.12 -26.73 -0.14 -1.83 16 3 C 0.11 1.56 2.28 -26.73 -0.06 1.50 16 4 H 0.10 1.68 6.07 -51.93 -0.32 1.36 16 5 O -0.54 -8.42 12.70 -35.23 -0.45 -8.87 16 6 C 0.05 0.77 1.75 -67.73 -0.12 0.66 16 7 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 8 C -0.12 -1.37 4.71 -26.65 -0.13 -1.49 16 9 C -0.12 -1.38 6.00 -26.60 -0.16 -1.54 16 10 C -0.12 -1.61 6.09 -26.65 -0.16 -1.78 16 11 C 0.05 0.94 5.30 -3.83 -0.02 0.92 16 12 N -0.52 -9.65 4.36 -226.70 -0.99 -10.64 16 13 C 0.06 1.31 4.63 -3.82 -0.02 1.30 16 14 C 0.03 0.84 4.92 -27.88 -0.14 0.70 16 15 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -27.48 13.29 55.43 0.74 -26.75 16 19 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.70 7.82 -51.92 -0.41 0.30 16 26 H 0.06 0.62 6.74 -51.93 -0.35 0.27 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.36 4.43 7.30 45.56 0.33 4.76 16 29 H 0.07 0.85 6.73 -51.93 -0.35 0.50 16 30 H 0.06 0.61 6.60 -51.93 -0.34 0.27 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 1.71 6.24 -51.93 -0.32 1.39 16 37 H 0.07 1.50 5.61 -51.93 -0.29 1.21 16 38 H 0.01 0.30 8.12 -51.93 -0.42 -0.12 16 39 H 0.01 0.41 6.45 -51.93 -0.33 0.07 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 311.54 15.07 4.69 4.69 Total: -1.00 -31.36 311.54 -8.58 -39.95 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.57 Total: 1.13 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -0.99 Total: -16.64 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.25 Total: -37.38 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.45 Total: -8.87 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.36 -8.58 -39.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304126250.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.309 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds