Wall clock time and date at job start Sun Mar 29 2020 22:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47361 * 2 1 4 4 H 1.09006 * 109.46786 * 55.00503 * 3 2 1 5 5 O 1.42896 * 109.47609 * 295.00476 * 3 2 1 6 6 C 1.53000 * 109.47408 * 174.99665 * 3 2 1 7 7 H 1.08993 * 109.45685 * 300.50125 * 6 3 2 8 8 C 1.53037 * 109.45611 * 60.46833 * 6 3 2 9 9 C 1.53124 * 109.27803 * 179.19790 * 8 6 3 10 10 C 1.53121 * 109.15610 * 302.34446 * 9 8 6 11 11 C 1.53034 * 109.28037 * 57.65456 * 10 9 8 12 12 N 1.46842 * 109.46317 * 180.51665 * 6 3 2 13 13 C 1.46904 * 110.99809 * 54.15386 * 12 6 3 14 14 C 1.52996 * 109.46823 * 190.64363 * 13 12 6 15 15 C 1.50707 * 109.47132 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99487 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00117 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00213 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99634 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47409 * 60.00135 * 19 17 15 21 21 H 1.48504 * 109.46855 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47187 * 299.99436 * 19 17 15 23 23 H 1.08996 * 109.47364 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47202 * 300.00352 * 1 2 3 25 25 H 1.09007 * 109.46908 * 59.99330 * 1 2 3 26 26 H 1.09000 * 109.46843 * 240.00527 * 2 1 3 27 27 H 1.08996 * 109.47260 * 120.00371 * 2 1 3 28 28 H 0.96706 * 113.99643 * 299.99862 * 5 3 2 29 29 H 1.08997 * 109.50540 * 59.25511 * 8 6 3 30 30 H 1.09004 * 109.50928 * 299.13688 * 8 6 3 31 31 H 1.08999 * 109.52715 * 182.44279 * 9 8 6 32 32 H 1.08990 * 109.52354 * 62.24902 * 9 8 6 33 33 H 1.08999 * 109.50161 * 177.59699 * 10 9 8 34 34 H 1.09000 * 109.50411 * 297.70802 * 10 9 8 35 35 H 1.09002 * 109.46322 * 60.83597 * 11 10 9 36 36 H 1.08998 * 109.46344 * 180.80141 * 11 10 9 37 37 H 1.08997 * 109.46598 * 310.64594 * 13 12 6 38 38 H 1.08995 * 109.47156 * 70.64315 * 13 12 6 39 39 H 1.08997 * 109.47877 * 300.00075 * 14 13 12 40 40 H 1.09004 * 109.47268 * 59.99835 * 14 13 12 41 41 H 0.96996 * 120.00413 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6620 2.0815 -1.2209 6 6 3.5648 1.4443 0.1258 7 1 3.8532 0.9491 1.0529 8 6 4.1752 0.6975 -1.0623 9 6 5.7017 0.7191 -0.9429 10 6 6.1805 2.1723 -0.8831 11 6 5.5119 2.8764 0.2997 12 7 4.0531 2.8291 0.1382 13 6 3.3821 3.6145 1.1828 14 6 3.7126 5.0968 0.9976 15 6 3.0238 5.9027 2.0688 16 1 2.4119 5.4070 2.8079 17 6 3.1747 7.2727 2.1051 18 7 3.9194 7.8763 1.2048 19 14 2.3215 8.2713 3.4333 20 1 2.7916 7.8230 4.7687 21 1 2.6421 9.7102 3.2536 22 1 0.8529 8.0748 3.3338 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.0142 1.6543 -2.0138 29 1 3.8760 1.1840 -1.9907 30 1 3.8249 -0.3347 -1.0624 31 1 6.1419 0.2259 -1.8095 32 1 6.0033 0.1985 -0.0341 33 1 7.2627 2.1938 -0.7551 34 1 5.9128 2.6820 -1.8087 35 1 5.7912 2.3745 1.2262 36 1 5.8398 3.9152 0.3366 37 1 2.3042 3.4706 1.1094 38 1 3.7268 3.2851 2.1629 39 1 4.7905 5.2408 1.0708 40 1 3.3679 5.4263 0.0174 41 1 4.0260 8.8401 1.2306 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304126250.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:36 Heat of formation + Delta-G solvation = -93.307189 kcal Electronic energy + Delta-G solvation = -18518.158267 eV Core-core repulsion = 15817.005338 eV Total energy + Delta-G solvation = -2701.152929 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.82635 -37.81819 -35.88491 -34.32880 -33.73147 -31.79698 -30.93248 -27.34454 -26.57492 -24.88194 -23.34492 -21.89171 -21.77639 -20.47103 -18.63280 -17.43853 -16.69215 -16.59275 -16.35183 -16.24794 -15.47193 -15.30653 -14.73786 -14.45401 -14.23514 -13.93625 -13.88477 -13.50812 -13.12054 -13.01723 -12.82342 -12.74495 -12.48178 -12.21616 -12.08596 -11.97522 -11.82829 -11.64169 -11.49574 -11.34753 -11.12906 -10.86699 -10.55600 -10.47885 -9.08845 -8.20801 -6.32636 1.37525 1.41692 1.49506 2.38986 2.97407 3.11876 3.61484 3.75044 3.88727 4.00073 4.09257 4.16145 4.27984 4.28876 4.41893 4.49239 4.61891 4.64037 4.64905 4.77415 4.89740 4.92334 5.00731 5.05494 5.07463 5.11021 5.13408 5.19432 5.30640 5.36952 5.42823 5.44036 5.50554 5.67968 5.79616 6.13088 6.35390 6.41156 6.84096 7.00238 7.36111 8.91363 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022577 B = 0.006568 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.928405 B = 4262.143089 C = 5185.290115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.145 4.145 3 C 0.110 3.890 4 H 0.071 0.929 5 O -0.564 6.564 6 C 0.051 3.949 7 H 0.039 0.961 8 C -0.110 4.110 9 C -0.113 4.113 10 C -0.111 4.111 11 C 0.052 3.948 12 N -0.534 5.534 13 C 0.079 3.921 14 C 0.042 3.958 15 C -0.547 4.547 16 H 0.057 0.943 17 C 0.001 3.999 18 N -0.931 5.931 19 Si 0.967 3.033 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.267 1.267 23 H 0.070 0.930 24 H 0.041 0.959 25 H 0.052 0.948 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.379 0.621 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.024 0.976 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.010 0.990 39 H -0.009 1.009 40 H -0.013 1.013 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.195 -19.193 -4.275 19.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.183 4.183 3 C 0.050 3.950 4 H 0.089 0.911 5 O -0.371 6.371 6 C -0.057 4.057 7 H 0.057 0.943 8 C -0.147 4.147 9 C -0.150 4.150 10 C -0.149 4.149 11 C -0.076 4.076 12 N -0.258 5.258 13 C -0.049 4.049 14 C 0.005 3.995 15 C -0.586 4.586 16 H 0.075 0.925 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.791 3.209 20 H -0.190 1.190 21 H -0.205 1.205 22 H -0.192 1.192 23 H 0.089 0.911 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.107 0.893 27 H 0.096 0.904 28 H 0.227 0.773 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.029 0.971 39 H 0.010 0.990 40 H 0.006 0.994 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.549 -18.428 -4.374 18.948 hybrid contribution 0.262 0.540 1.201 1.342 sum -0.287 -17.889 -3.174 18.170 Atomic orbital electron populations 1.21694 0.95213 1.02014 1.01594 1.22198 0.96932 0.95190 1.03934 1.22030 0.91840 0.93645 0.87460 0.91070 1.86630 1.76309 1.58242 1.15888 1.22433 0.95919 0.88494 0.98892 0.94322 1.21683 0.95716 1.00171 0.97153 1.21543 0.95450 0.95357 1.02673 1.21567 0.99567 0.96422 0.97319 1.22116 0.87916 0.99913 0.97609 1.61877 1.04643 1.11431 1.47875 1.21981 0.98101 0.94277 0.90515 1.18851 0.94740 0.90947 0.95002 1.21597 1.30399 0.92915 1.13646 0.92465 1.25981 0.95980 0.99189 0.98496 1.70108 1.40375 1.09976 1.36673 0.85480 0.79089 0.77238 0.79106 1.19044 1.20528 1.19202 0.91060 0.93953 0.92920 0.89303 0.90427 0.77253 0.91124 0.88691 0.89568 0.91973 0.90514 0.92126 0.95816 0.93321 0.91783 0.97138 0.99027 0.99440 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.81 71.98 0.71 -2.18 16 2 C -0.14 -2.77 5.12 30.59 0.16 -2.61 16 3 C 0.11 3.04 2.28 30.59 0.07 3.11 16 4 H 0.07 2.40 6.07 -2.38 -0.01 2.39 16 5 O -0.56 -17.38 12.70 -148.98 -1.89 -19.27 16 6 C 0.05 1.44 1.75 44.94 0.08 1.52 16 7 H 0.04 1.09 8.14 -2.39 -0.02 1.08 16 8 C -0.11 -2.26 4.71 30.65 0.14 -2.11 16 9 C -0.11 -2.27 6.00 30.68 0.18 -2.09 16 10 C -0.11 -2.95 6.09 30.65 0.19 -2.76 16 11 C 0.05 1.87 5.30 86.32 0.46 2.32 16 12 N -0.53 -20.19 4.36 -871.14 -3.80 -23.99 16 13 C 0.08 3.61 4.63 86.30 0.40 4.01 16 14 C 0.04 2.40 4.92 29.85 0.15 2.55 16 15 C -0.55 -32.97 9.11 25.60 0.23 -32.74 16 16 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 17 C 0.00 0.09 5.46 84.65 0.46 0.55 16 18 N -0.93 -59.04 13.29 21.45 0.28 -58.76 16 19 Si 0.97 45.86 29.54 68.60 2.03 47.89 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.05 1.12 7.82 -2.38 -0.02 1.10 16 26 H 0.09 1.31 6.74 -2.39 -0.02 1.30 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.38 8.69 7.30 -74.05 -0.54 8.15 16 29 H 0.07 1.49 6.73 -2.39 -0.02 1.48 16 30 H 0.09 1.40 6.60 -2.38 -0.02 1.38 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.05 2.06 6.24 -2.39 -0.01 2.05 16 37 H 0.06 2.97 5.61 -2.39 -0.01 2.96 16 38 H 0.01 0.48 8.12 -2.39 -0.02 0.46 16 39 H -0.01 -0.52 6.45 -2.39 -0.02 -0.53 16 40 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 41 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -70.61 311.54 0.29 -70.32 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.45 Total: 14.23 kcal Atomic # 6 Polarization: -33.64 SS G_CDS: 3.23 Total: -30.42 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -3.52 Total: -82.75 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -1.89 Total: -19.27 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -70.61 0.29 -70.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304126250.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.991 kcal (2) G-P(sol) polarization free energy of solvation -70.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds