Wall clock time and date at job start Sun Mar 29 2020 22:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47247 * 2 1 4 4 H 1.09000 * 109.47258 * 305.00035 * 3 2 1 5 5 O 1.42904 * 109.47101 * 64.99907 * 3 2 1 6 6 C 1.53001 * 109.47440 * 184.99891 * 3 2 1 7 7 H 1.08995 * 109.45614 * 55.02444 * 6 3 2 8 8 C 1.53042 * 109.46209 * 295.05306 * 6 3 2 9 9 C 1.53115 * 109.27998 * 180.80394 * 8 6 3 10 10 C 1.53118 * 109.16005 * 57.65258 * 9 8 6 11 11 C 1.53038 * 109.28237 * 302.34659 * 10 9 8 12 12 N 1.46849 * 109.52195 * 59.17938 * 11 10 9 13 13 C 1.46896 * 111.00387 * 174.16276 * 12 11 10 14 14 C 1.53003 * 109.46953 * 66.04333 * 13 12 11 15 15 C 1.50703 * 109.47202 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99685 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00216 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00069 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99806 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46845 * 90.00621 * 19 17 15 21 21 H 1.48503 * 109.47399 * 210.00111 * 19 17 15 22 22 H 1.48498 * 109.47295 * 330.00717 * 19 17 15 23 23 H 1.09007 * 109.46770 * 60.00119 * 1 2 3 24 24 H 1.09002 * 109.47158 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47745 * 300.00315 * 1 2 3 26 26 H 1.09004 * 109.47482 * 239.99985 * 2 1 3 27 27 H 1.09006 * 109.47254 * 119.99672 * 2 1 3 28 28 H 0.96693 * 114.00069 * 60.00260 * 5 3 2 29 29 H 1.09000 * 109.49889 * 60.85692 * 8 6 3 30 30 H 1.09000 * 109.53402 * 300.76410 * 8 6 3 31 31 H 1.09002 * 109.52092 * 297.75001 * 9 8 6 32 32 H 1.08994 * 109.57476 * 177.58982 * 9 8 6 33 33 H 1.08998 * 109.50369 * 182.40381 * 10 9 8 34 34 H 1.08998 * 109.50349 * 62.28941 * 10 9 8 35 35 H 1.08999 * 109.46478 * 299.16727 * 11 10 9 36 36 H 1.08998 * 109.46526 * 179.19068 * 11 10 9 37 37 H 1.09008 * 109.47013 * 306.04954 * 13 12 11 38 38 H 1.08996 * 109.47783 * 186.04052 * 13 12 11 39 39 H 1.08999 * 109.47344 * 60.00500 * 14 13 12 40 40 H 1.09001 * 109.47340 * 300.00471 * 14 13 12 41 41 H 0.97000 * 119.99667 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6619 2.0814 1.2211 6 6 3.5648 1.4444 -0.1257 7 1 3.8568 0.8804 -1.0115 8 6 4.1797 0.7962 1.1169 9 6 5.7059 0.8184 0.9959 10 6 6.1754 2.2656 0.8231 11 6 5.5027 2.8711 -0.4109 12 7 4.0442 2.8272 -0.2460 13 6 3.3684 3.5245 -1.3483 14 6 3.6100 2.7667 -2.6554 15 6 2.9173 3.4824 -3.7863 16 1 2.3601 4.3870 -3.5922 17 6 2.9940 2.9818 -5.0687 18 7 2.3890 3.6061 -6.0556 19 14 3.9571 1.4168 -5.4044 20 1 3.0579 0.2430 -5.2661 21 1 4.5064 1.4597 -6.7834 22 1 5.0724 1.3034 -4.4305 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.0141 1.6543 2.0139 29 1 3.8358 -0.2350 1.1973 30 1 3.8769 1.3510 2.0050 31 1 6.0112 0.2306 0.1303 32 1 6.1498 0.3966 1.8976 33 1 7.2575 2.2841 0.6937 34 1 5.9040 2.8440 1.7062 35 1 5.7855 2.3005 -1.2955 36 1 5.8238 3.9061 -0.5285 37 1 3.7654 4.5359 -1.4360 38 1 2.2981 3.5704 -1.1475 39 1 3.2131 1.7554 -2.5677 40 1 4.6804 2.7208 -2.8563 41 1 2.4433 3.2540 -6.9578 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304126252.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:38 Heat of formation + Delta-G solvation = -92.147089 kcal Electronic energy + Delta-G solvation = -18947.282174 eV Core-core repulsion = 16246.179551 eV Total energy + Delta-G solvation = -2701.102623 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.99222 -37.84341 -35.92894 -34.40233 -33.72186 -31.71203 -31.25285 -27.47384 -26.58153 -24.43143 -23.67258 -22.29279 -21.78952 -19.99174 -19.07570 -17.43774 -16.81486 -16.49936 -16.43973 -16.18622 -15.59932 -15.11821 -14.96652 -14.63779 -14.23763 -14.05215 -13.96716 -13.51084 -13.21315 -13.06067 -12.84965 -12.78034 -12.36978 -12.28088 -12.05759 -11.93677 -11.82858 -11.70604 -11.57384 -11.45751 -11.33624 -10.92048 -10.81331 -10.51475 -9.06814 -8.35547 -6.39719 1.25871 1.28019 1.39241 2.27857 2.97182 2.98619 3.61350 3.72384 3.88352 4.02315 4.10660 4.17708 4.25022 4.28402 4.46091 4.47963 4.53813 4.62982 4.65206 4.78422 4.82234 4.89385 4.92515 5.00467 5.05435 5.06174 5.10757 5.19769 5.25688 5.34394 5.37011 5.40171 5.43046 5.48613 5.56091 6.08714 6.30658 6.31531 6.68775 6.99639 7.24515 8.81212 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018985 B = 0.008875 C = 0.007312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.512485 B = 3154.153978 C = 3828.218973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.150 4.150 3 C 0.113 3.887 4 H 0.069 0.931 5 O -0.558 6.558 6 C 0.050 3.950 7 H 0.029 0.971 8 C -0.110 4.110 9 C -0.118 4.118 10 C -0.108 4.108 11 C 0.046 3.954 12 N -0.522 5.522 13 C 0.075 3.925 14 C -0.030 4.030 15 C -0.529 4.529 16 H 0.032 0.968 17 C 0.009 3.991 18 N -0.947 5.947 19 Si 0.947 3.053 20 H -0.264 1.264 21 H -0.280 1.280 22 H -0.255 1.255 23 H 0.034 0.966 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.380 0.620 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.015 0.985 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.015 0.985 40 H 0.012 0.988 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.167 -10.635 17.368 21.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.188 4.188 3 C 0.053 3.947 4 H 0.087 0.913 5 O -0.365 6.365 6 C -0.059 4.059 7 H 0.047 0.953 8 C -0.147 4.147 9 C -0.156 4.156 10 C -0.146 4.146 11 C -0.082 4.082 12 N -0.245 5.245 13 C -0.053 4.053 14 C -0.069 4.069 15 C -0.568 4.568 16 H 0.051 0.949 17 C -0.189 4.189 18 N -0.588 5.588 19 Si 0.770 3.230 20 H -0.189 1.189 21 H -0.205 1.205 22 H -0.179 1.179 23 H 0.053 0.947 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.112 0.888 28 H 0.229 0.771 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.034 0.966 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.033 0.967 40 H 0.031 0.969 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.720 -9.985 17.233 20.469 hybrid contribution 0.537 -0.785 -1.654 1.908 sum 5.256 -10.770 15.579 19.656 Atomic orbital electron populations 1.21683 0.95073 1.02002 1.01625 1.22214 0.97195 0.95927 1.03429 1.21899 0.92040 0.93316 0.87421 0.91320 1.86585 1.76504 1.57852 1.15591 1.22382 0.95797 0.89182 0.98540 0.95325 1.21677 0.95754 1.00682 0.96625 1.21569 0.95424 0.96279 1.02302 1.21561 0.99565 0.96372 0.97087 1.22193 0.87820 1.00611 0.97591 1.62287 1.04895 1.14924 1.42409 1.21911 0.98565 0.96852 0.87953 1.19992 0.95787 0.96167 0.94905 1.21355 1.32113 1.10458 0.92866 0.94921 1.25966 0.96239 1.00771 0.95887 1.70062 1.45584 1.42104 1.01019 0.85708 0.79812 0.79654 0.77791 1.18896 1.20534 1.17896 0.94692 0.91227 0.91902 0.91963 0.88770 0.77092 0.89546 0.89919 0.93186 0.89305 0.90424 0.90730 0.96631 0.91532 0.92605 0.92114 0.96728 0.96938 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.81 71.98 0.71 -2.77 16 2 C -0.15 -3.56 5.24 30.59 0.16 -3.40 16 3 C 0.11 3.39 2.28 30.59 0.07 3.46 16 4 H 0.07 2.67 5.90 -2.39 -0.01 2.65 16 5 O -0.56 -15.74 12.72 -148.98 -1.90 -17.63 16 6 C 0.05 1.48 1.10 44.94 0.05 1.53 16 7 H 0.03 0.99 6.61 -2.39 -0.02 0.97 16 8 C -0.11 -2.25 4.70 30.65 0.14 -2.11 16 9 C -0.12 -2.32 6.00 30.67 0.18 -2.14 16 10 C -0.11 -2.42 6.09 30.65 0.19 -2.23 16 11 C 0.05 1.43 5.05 86.33 0.44 1.86 16 12 N -0.52 -17.85 4.64 -871.09 -4.04 -21.89 16 13 C 0.08 3.21 4.73 86.30 0.41 3.62 16 14 C -0.03 -1.45 3.25 29.85 0.10 -1.35 16 15 C -0.53 -31.51 9.66 25.60 0.25 -31.26 16 16 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 17 C 0.01 0.52 5.47 84.65 0.46 0.98 16 18 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 19 Si 0.95 45.40 27.47 68.60 1.88 47.28 16 20 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 22 H -0.25 -11.57 6.54 99.48 0.65 -10.92 16 23 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 24 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.06 1.44 7.82 -2.39 -0.02 1.42 16 26 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.09 1.66 6.83 -2.38 -0.02 1.64 16 28 H 0.38 7.44 7.18 -74.06 -0.53 6.91 16 29 H 0.09 1.41 6.72 -2.39 -0.02 1.39 16 30 H 0.08 1.53 6.68 -2.39 -0.02 1.51 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.02 0.54 6.75 -2.39 -0.02 0.52 16 36 H 0.07 2.09 8.06 -2.39 -0.02 2.08 16 37 H 0.06 2.46 8.06 -2.38 -0.02 2.44 16 38 H 0.06 2.74 6.21 -2.39 -0.01 2.72 16 39 H 0.01 0.70 5.75 -2.39 -0.01 0.68 16 40 H 0.01 0.61 5.74 -2.39 -0.01 0.60 16 41 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -68.70 304.54 -0.19 -68.89 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.41 Total: 17.33 kcal Atomic # 6 Polarization: -36.97 SS G_CDS: 3.15 Total: -33.82 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -3.74 Total: -82.06 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -1.90 Total: -17.63 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.28 kcal Total: -68.70 -0.19 -68.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304126252.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.252 kcal (2) G-P(sol) polarization free energy of solvation -68.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds