Wall clock time and date at job start Sun Mar 29 2020 22:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47141 * 2 1 4 4 H 1.09002 * 109.46884 * 54.64556 * 3 2 1 5 5 O 1.42897 * 109.47138 * 294.64442 * 3 2 1 6 6 C 1.53004 * 109.46985 * 174.64668 * 3 2 1 7 7 H 1.09002 * 109.46160 * 183.03528 * 6 3 2 8 8 C 1.53033 * 109.46461 * 63.06405 * 6 3 2 9 9 C 1.53118 * 109.28062 * 180.80294 * 8 6 3 10 10 C 1.53115 * 109.15750 * 57.65648 * 9 8 6 11 11 C 1.53038 * 109.28110 * 302.34259 * 10 9 8 12 12 N 1.46851 * 109.52055 * 59.18487 * 11 10 9 13 13 C 1.46896 * 111.00014 * 174.16346 * 12 11 10 14 14 C 1.52998 * 109.47398 * 66.28905 * 13 12 11 15 15 C 1.50708 * 109.47244 * 185.09058 * 14 13 12 16 16 H 1.08003 * 119.99702 * 359.97438 * 15 14 13 17 17 C 1.37866 * 119.99991 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99876 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 120.00244 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46856 * 90.00301 * 19 17 15 21 21 H 1.48497 * 109.47375 * 209.99739 * 19 17 15 22 22 H 1.48498 * 109.47207 * 330.00210 * 19 17 15 23 23 H 1.09008 * 109.47136 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47293 * 300.00054 * 1 2 3 25 25 H 1.09002 * 109.47309 * 59.99980 * 1 2 3 26 26 H 1.08996 * 109.47293 * 239.99946 * 2 1 3 27 27 H 1.09002 * 109.47309 * 120.00020 * 2 1 3 28 28 H 0.96704 * 114.00139 * 300.00233 * 5 3 2 29 29 H 1.09000 * 109.50472 * 300.74844 * 8 6 3 30 30 H 1.09004 * 109.49769 * 60.82380 * 8 6 3 31 31 H 1.09005 * 109.52160 * 297.75603 * 9 8 6 32 32 H 1.08999 * 109.52374 * 177.56001 * 9 8 6 33 33 H 1.09003 * 109.50329 * 182.40631 * 10 9 8 34 34 H 1.09001 * 109.50993 * 62.28702 * 10 9 8 35 35 H 1.08996 * 109.46579 * 179.19145 * 11 10 9 36 36 H 1.08997 * 109.46522 * 299.17112 * 11 10 9 37 37 H 1.09001 * 109.46856 * 186.28965 * 13 12 11 38 38 H 1.08997 * 109.47106 * 306.28649 * 13 12 11 39 39 H 1.08994 * 109.47262 * 305.09098 * 14 13 12 40 40 H 1.09007 * 109.47307 * 65.09219 * 14 13 12 41 41 H 0.97005 * 119.99797 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6004 1.9832 0.8382 5 8 1.6691 2.0788 -1.2245 6 6 3.5640 1.4446 0.1346 7 1 3.9224 2.4725 0.1888 8 6 4.1842 0.7519 -1.0810 9 6 5.7081 0.7386 -0.9323 10 6 6.0795 0.0285 0.3724 11 6 5.4045 0.7421 1.5459 12 7 3.9482 0.7273 1.3571 13 6 3.2596 1.2809 2.5307 14 6 3.5894 2.7693 2.6605 15 6 2.9857 3.3085 3.9318 16 1 2.4228 2.6551 4.5818 17 6 3.1521 4.6359 4.2649 18 7 2.6258 5.1064 5.3746 19 14 4.1264 5.7660 3.1410 20 1 3.2116 6.3866 2.1494 21 1 4.7748 6.8295 3.9495 22 1 5.1672 4.9804 2.4305 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0258 1.6500 -2.0145 29 1 3.8157 -0.2719 -1.1438 30 1 3.9111 1.2932 -1.9868 31 1 6.0808 1.7627 -0.9086 32 1 6.1517 0.2079 -1.7748 33 1 7.1612 0.0533 0.5051 34 1 5.7409 -1.0068 0.3326 35 1 5.6553 0.2304 2.4750 36 1 5.7540 1.7734 1.5935 37 1 2.1832 1.1562 2.4126 38 1 3.5900 0.7560 3.4269 39 1 4.6710 2.9007 2.6877 40 1 3.1792 3.3082 1.8064 41 1 2.7425 6.0405 5.6088 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304126253.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:41 Heat of formation + Delta-G solvation = -70.348575 kcal Electronic energy + Delta-G solvation = -18970.222268 eV Core-core repulsion = 16270.064899 eV Total energy + Delta-G solvation = -2700.157369 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.81571 -36.73859 -34.41082 -32.69751 -32.27831 -30.61348 -29.44774 -26.09787 -25.07595 -22.83847 -22.60155 -20.98077 -20.61478 -18.52682 -16.93309 -16.30284 -15.85086 -15.17955 -14.63714 -14.45141 -14.31178 -13.71458 -13.59477 -13.29703 -12.93177 -12.69092 -12.49129 -12.25165 -11.83788 -11.68377 -11.58087 -11.21108 -11.00034 -10.93903 -10.85443 -10.50328 -10.46787 -10.24099 -10.05151 -9.86673 -9.66168 -9.45631 -9.21231 -8.55617 -7.68193 -6.07077 -4.05244 3.28790 3.35923 3.38528 4.25537 4.42685 4.69091 4.83292 4.93777 5.02375 5.14882 5.26576 5.32882 5.34422 5.45340 5.63924 5.73153 5.78116 5.88479 5.91999 5.96988 6.00583 6.02899 6.08581 6.17709 6.23249 6.28420 6.32896 6.38135 6.50106 6.52490 6.58568 6.71338 7.17253 7.20632 7.47178 7.59749 7.82398 7.87739 8.50029 8.97590 9.55804 11.06195 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019938 B = 0.008549 C = 0.007284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.026173 B = 3274.339648 C = 3843.379309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.146 4.146 3 C 0.107 3.893 4 H 0.109 0.891 5 O -0.561 6.561 6 C 0.053 3.947 7 H 0.052 0.948 8 C -0.117 4.117 9 C -0.119 4.119 10 C -0.115 4.115 11 C 0.052 3.948 12 N -0.530 5.530 13 C 0.060 3.940 14 C -0.046 4.046 15 C -0.518 4.518 16 H 0.073 0.927 17 C 0.069 3.931 18 N -0.902 5.902 19 Si 0.878 3.122 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.269 1.269 23 H 0.047 0.953 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.364 0.636 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.016 0.984 40 H 0.013 0.987 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.324 -10.840 -13.758 17.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.183 4.183 3 C 0.048 3.952 4 H 0.127 0.873 5 O -0.365 6.365 6 C -0.056 4.056 7 H 0.069 0.931 8 C -0.155 4.155 9 C -0.156 4.156 10 C -0.153 4.153 11 C -0.076 4.076 12 N -0.255 5.255 13 C -0.067 4.067 14 C -0.084 4.084 15 C -0.556 4.556 16 H 0.091 0.909 17 C -0.133 4.133 18 N -0.540 5.540 19 Si 0.705 3.295 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.194 1.194 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.211 0.789 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.034 0.966 40 H 0.031 0.969 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.836 -10.770 -13.295 17.343 hybrid contribution 1.112 1.306 -0.642 1.831 sum 3.948 -9.464 -13.937 17.303 Atomic orbital electron populations 1.21742 0.96040 1.00811 1.02164 1.22142 0.95766 0.97157 1.03268 1.22116 0.92570 0.93419 0.87085 0.87311 1.86637 1.76609 1.57587 1.15671 1.22220 0.95750 0.96673 0.90971 0.93054 1.21687 0.95643 1.01212 0.96940 1.21534 0.95890 1.00577 0.97635 1.21585 0.99207 0.99987 0.94497 1.22057 0.88158 0.99316 0.98057 1.62321 1.06510 1.53862 1.02783 1.22241 0.98252 0.95389 0.90812 1.20156 0.96851 0.93637 0.97775 1.21027 1.33867 0.95410 1.05314 0.90890 1.25012 0.95220 0.98112 0.94926 1.69914 1.45325 1.15016 1.23792 0.86809 0.80922 0.80696 0.81037 1.20204 1.21342 1.19380 0.93350 0.92622 0.92724 0.92354 0.89464 0.78894 0.90988 0.92075 0.92408 0.92259 0.92094 0.91453 0.90827 0.94400 0.91121 0.91192 0.96598 0.96902 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.81 37.15 0.36 -1.53 16 2 C -0.15 -1.91 4.88 -26.73 -0.13 -2.04 16 3 C 0.11 1.65 2.24 -26.73 -0.06 1.59 16 4 H 0.11 2.02 6.11 -51.93 -0.32 1.70 16 5 O -0.56 -8.32 12.82 -35.23 -0.45 -8.77 16 6 C 0.05 0.82 1.29 -67.72 -0.09 0.74 16 7 H 0.05 0.95 6.72 -51.93 -0.35 0.61 16 8 C -0.12 -1.42 4.71 -26.65 -0.13 -1.54 16 9 C -0.12 -1.40 6.00 -26.61 -0.16 -1.56 16 10 C -0.11 -1.41 6.09 -26.65 -0.16 -1.57 16 11 C 0.05 0.81 5.06 -3.83 -0.02 0.79 16 12 N -0.53 -8.63 3.77 -226.69 -0.86 -9.49 16 13 C 0.06 1.17 4.50 -3.83 -0.02 1.15 16 14 C -0.05 -1.08 3.20 -27.88 -0.09 -1.17 16 15 C -0.52 -14.72 9.66 -34.44 -0.33 -15.06 16 16 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 17 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 18 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 19 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.27 -6.61 6.54 56.52 0.37 -6.24 16 23 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.68 7.83 -51.93 -0.41 0.28 16 26 H 0.06 0.67 6.77 -51.93 -0.35 0.32 16 27 H 0.09 1.24 6.87 -51.93 -0.36 0.88 16 28 H 0.36 3.96 7.26 45.56 0.33 4.29 16 29 H 0.07 0.83 6.59 -51.93 -0.34 0.48 16 30 H 0.06 0.65 6.78 -51.93 -0.35 0.30 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.12 8.06 -51.93 -0.42 0.70 16 36 H 0.04 0.66 6.65 -51.93 -0.35 0.32 16 37 H 0.07 1.37 5.96 -51.93 -0.31 1.06 16 38 H 0.07 1.39 8.06 -51.93 -0.42 0.97 16 39 H 0.02 0.39 5.52 -51.93 -0.29 0.10 16 40 H 0.01 0.31 5.79 -51.92 -0.30 0.01 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 301.81 15.07 4.55 4.55 Total: -1.00 -30.62 301.81 -7.92 -38.54 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.35 Total: 3.07 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -0.92 Total: -18.28 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: -0.08 Total: -36.71 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.45 Total: -8.77 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.62 -7.92 -38.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304126253.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.809 kcal (2) G-P(sol) polarization free energy of solvation -30.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds