Wall clock time and date at job start Sun Mar 29 2020 22:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47141 * 2 1 4 4 H 1.09002 * 109.46884 * 54.64556 * 3 2 1 5 5 O 1.42897 * 109.47138 * 294.64442 * 3 2 1 6 6 C 1.53004 * 109.46985 * 174.64668 * 3 2 1 7 7 H 1.09002 * 109.46160 * 183.03528 * 6 3 2 8 8 C 1.53033 * 109.46461 * 63.06405 * 6 3 2 9 9 C 1.53118 * 109.28062 * 180.80294 * 8 6 3 10 10 C 1.53115 * 109.15750 * 57.65648 * 9 8 6 11 11 C 1.53038 * 109.28110 * 302.34259 * 10 9 8 12 12 N 1.46851 * 109.52055 * 59.18487 * 11 10 9 13 13 C 1.46896 * 111.00014 * 174.16346 * 12 11 10 14 14 C 1.52998 * 109.47398 * 66.28905 * 13 12 11 15 15 C 1.50708 * 109.47244 * 185.09058 * 14 13 12 16 16 H 1.08003 * 119.99702 * 359.97438 * 15 14 13 17 17 C 1.37866 * 119.99991 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99876 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 120.00244 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46856 * 90.00301 * 19 17 15 21 21 H 1.48497 * 109.47375 * 209.99739 * 19 17 15 22 22 H 1.48498 * 109.47207 * 330.00210 * 19 17 15 23 23 H 1.09008 * 109.47136 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47293 * 300.00054 * 1 2 3 25 25 H 1.09002 * 109.47309 * 59.99980 * 1 2 3 26 26 H 1.08996 * 109.47293 * 239.99946 * 2 1 3 27 27 H 1.09002 * 109.47309 * 120.00020 * 2 1 3 28 28 H 0.96704 * 114.00139 * 300.00233 * 5 3 2 29 29 H 1.09000 * 109.50472 * 300.74844 * 8 6 3 30 30 H 1.09004 * 109.49769 * 60.82380 * 8 6 3 31 31 H 1.09005 * 109.52160 * 297.75603 * 9 8 6 32 32 H 1.08999 * 109.52374 * 177.56001 * 9 8 6 33 33 H 1.09003 * 109.50329 * 182.40631 * 10 9 8 34 34 H 1.09001 * 109.50993 * 62.28702 * 10 9 8 35 35 H 1.08996 * 109.46579 * 179.19145 * 11 10 9 36 36 H 1.08997 * 109.46522 * 299.17112 * 11 10 9 37 37 H 1.09001 * 109.46856 * 186.28965 * 13 12 11 38 38 H 1.08997 * 109.47106 * 306.28649 * 13 12 11 39 39 H 1.08994 * 109.47262 * 305.09098 * 14 13 12 40 40 H 1.09007 * 109.47307 * 65.09219 * 14 13 12 41 41 H 0.97005 * 119.99797 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6004 1.9832 0.8382 5 8 1.6691 2.0788 -1.2245 6 6 3.5640 1.4446 0.1346 7 1 3.9224 2.4725 0.1888 8 6 4.1842 0.7519 -1.0810 9 6 5.7081 0.7386 -0.9323 10 6 6.0795 0.0285 0.3724 11 6 5.4045 0.7421 1.5459 12 7 3.9482 0.7273 1.3571 13 6 3.2596 1.2809 2.5307 14 6 3.5894 2.7693 2.6605 15 6 2.9857 3.3085 3.9318 16 1 2.4228 2.6551 4.5818 17 6 3.1521 4.6359 4.2649 18 7 2.6258 5.1064 5.3746 19 14 4.1264 5.7660 3.1410 20 1 3.2116 6.3866 2.1494 21 1 4.7748 6.8295 3.9495 22 1 5.1672 4.9804 2.4305 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0258 1.6500 -2.0145 29 1 3.8157 -0.2719 -1.1438 30 1 3.9111 1.2932 -1.9868 31 1 6.0808 1.7627 -0.9086 32 1 6.1517 0.2079 -1.7748 33 1 7.1612 0.0533 0.5051 34 1 5.7409 -1.0068 0.3326 35 1 5.6553 0.2304 2.4750 36 1 5.7540 1.7734 1.5935 37 1 2.1832 1.1562 2.4126 38 1 3.5900 0.7560 3.4269 39 1 4.6710 2.9007 2.6877 40 1 3.1792 3.3082 1.8064 41 1 2.7425 6.0405 5.6088 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304126253.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:40 Heat of formation + Delta-G solvation = -91.991987 kcal Electronic energy + Delta-G solvation = -18971.160797 eV Core-core repulsion = 16270.064899 eV Total energy + Delta-G solvation = -2701.095898 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.06320 -37.95003 -35.93984 -34.48090 -33.59180 -31.71548 -31.25961 -27.39641 -26.57897 -24.32810 -23.85677 -22.18137 -22.07684 -19.78721 -19.08948 -17.51581 -17.12113 -16.55630 -16.36953 -15.74742 -15.48591 -15.10145 -15.05919 -14.70737 -14.45797 -14.06935 -13.90278 -13.63249 -13.29467 -12.93416 -12.83875 -12.77429 -12.42130 -12.34162 -12.02189 -11.93810 -11.82405 -11.69011 -11.55464 -11.41517 -11.23223 -10.99838 -10.82065 -10.59444 -9.14583 -8.36858 -6.40062 1.25323 1.25682 1.36715 2.26346 2.94982 2.97880 3.59476 3.70698 3.85717 3.95331 4.09697 4.20563 4.26635 4.37793 4.47536 4.48904 4.53651 4.67614 4.71203 4.80039 4.85647 4.90330 4.94573 5.01041 5.04746 5.09073 5.18100 5.25104 5.26669 5.35109 5.37954 5.44002 5.48692 5.52586 5.56122 6.05468 6.23735 6.27929 6.68329 6.88536 7.24399 8.79628 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019938 B = 0.008549 C = 0.007284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.026173 B = 3274.339648 C = 3843.379309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C 0.111 3.889 4 H 0.067 0.933 5 O -0.572 6.572 6 C 0.052 3.948 7 H 0.017 0.983 8 C -0.111 4.111 9 C -0.119 4.119 10 C -0.107 4.107 11 C 0.046 3.954 12 N -0.515 5.515 13 C 0.072 3.928 14 C -0.032 4.032 15 C -0.527 4.527 16 H 0.038 0.962 17 C 0.010 3.990 18 N -0.945 5.945 19 Si 0.943 3.057 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.257 1.257 23 H 0.067 0.933 24 H 0.034 0.966 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.384 0.616 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.013 0.987 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.012 0.988 40 H 0.007 0.993 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.608 -12.162 -16.647 21.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C 0.052 3.948 4 H 0.085 0.915 5 O -0.379 6.379 6 C -0.057 4.057 7 H 0.035 0.965 8 C -0.148 4.148 9 C -0.157 4.157 10 C -0.145 4.145 11 C -0.082 4.082 12 N -0.239 5.239 13 C -0.056 4.056 14 C -0.071 4.071 15 C -0.565 4.565 16 H 0.057 0.943 17 C -0.187 4.187 18 N -0.586 5.586 19 Si 0.768 3.232 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.181 1.181 23 H 0.086 0.914 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.234 0.766 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.031 0.969 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.031 0.969 40 H 0.025 0.975 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.131 -12.114 -16.207 20.652 hybrid contribution 0.658 1.695 0.293 1.841 sum 4.789 -10.419 -15.915 19.616 Atomic orbital electron populations 1.21728 0.95772 1.01813 1.01285 1.22051 0.95950 0.95351 1.03987 1.21885 0.92287 0.94292 0.86335 0.91528 1.86595 1.76902 1.58221 1.16231 1.22291 0.96075 0.95262 0.92062 0.96514 1.21697 0.95801 1.01811 0.95515 1.21569 0.95556 1.00223 0.98302 1.21560 0.99814 1.00037 0.93087 1.22199 0.87506 0.98413 1.00100 1.62377 1.07012 1.52791 1.01757 1.21986 0.98607 0.92649 0.92382 1.20009 0.95884 0.96275 0.94950 1.21369 1.33356 0.95281 1.06537 0.94323 1.25905 0.96437 0.99913 0.96461 1.70049 1.47079 1.15708 1.25758 0.85761 0.79697 0.78689 0.79102 1.19612 1.20292 1.18146 0.91381 0.94644 0.92488 0.89636 0.90506 0.76615 0.89373 0.90042 0.93680 0.89286 0.90479 0.90223 0.90903 0.96904 0.91419 0.91820 0.96941 0.97482 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.81 71.98 0.71 -2.84 16 2 C -0.14 -3.30 4.88 30.59 0.15 -3.15 16 3 C 0.11 3.35 2.24 30.60 0.07 3.42 16 4 H 0.07 2.57 6.11 -2.39 -0.01 2.55 16 5 O -0.57 -16.05 12.82 -148.98 -1.91 -17.96 16 6 C 0.05 1.56 1.29 44.94 0.06 1.62 16 7 H 0.02 0.62 6.72 -2.39 -0.02 0.61 16 8 C -0.11 -2.29 4.71 30.64 0.14 -2.14 16 9 C -0.12 -2.36 6.00 30.67 0.18 -2.17 16 10 C -0.11 -2.29 6.09 30.65 0.19 -2.11 16 11 C 0.05 1.37 5.06 86.33 0.44 1.80 16 12 N -0.51 -16.42 3.77 -871.10 -3.29 -19.71 16 13 C 0.07 2.87 4.50 86.30 0.39 3.26 16 14 C -0.03 -1.58 3.20 29.85 0.10 -1.48 16 15 C -0.53 -31.18 9.66 25.60 0.25 -30.93 16 16 H 0.04 2.48 7.99 -2.91 -0.02 2.46 16 17 C 0.01 0.62 5.47 84.65 0.46 1.08 16 18 N -0.95 -60.44 13.96 21.44 0.30 -60.14 16 19 Si 0.94 46.60 27.47 68.60 1.88 48.48 16 20 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 22 H -0.26 -12.11 6.54 99.48 0.65 -11.46 16 23 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 1.32 7.83 -2.39 -0.02 1.31 16 26 H 0.09 1.63 6.77 -2.39 -0.02 1.61 16 27 H 0.08 2.05 6.87 -2.39 -0.02 2.04 16 28 H 0.38 7.13 7.26 -74.05 -0.54 6.59 16 29 H 0.09 1.59 6.59 -2.39 -0.02 1.57 16 30 H 0.08 1.38 6.78 -2.38 -0.02 1.37 16 31 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 2.15 8.06 -2.39 -0.02 2.13 16 36 H 0.01 0.44 6.65 -2.39 -0.02 0.43 16 37 H 0.07 2.75 5.96 -2.39 -0.01 2.73 16 38 H 0.06 2.61 8.06 -2.39 -0.02 2.59 16 39 H 0.01 0.61 5.52 -2.39 -0.01 0.60 16 40 H 0.01 0.35 5.79 -2.38 -0.01 0.33 16 41 H 0.27 15.91 8.31 -92.70 -0.77 15.14 16 Total: -1.00 -68.27 301.81 0.52 -67.75 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.41 Total: 15.22 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 3.13 Total: -33.64 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -2.99 Total: -79.85 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -1.91 Total: -17.96 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.88 Total: 48.48 kcal Total: -68.27 0.52 -67.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304126253.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.243 kcal (2) G-P(sol) polarization free energy of solvation -68.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds