Wall clock time and date at job start Sun Mar 29 2020 22:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47561 * 2 1 4 4 H 1.09005 * 109.46955 * 305.50661 * 3 2 1 5 5 O 1.42902 * 109.47386 * 65.50344 * 3 2 1 6 6 C 1.52999 * 109.47540 * 185.50495 * 3 2 1 7 7 H 1.09000 * 109.46681 * 174.93759 * 6 3 2 8 8 C 1.53030 * 109.45476 * 294.91876 * 6 3 2 9 9 C 1.53118 * 109.27953 * 179.18597 * 8 6 3 10 10 C 1.53124 * 109.16035 * 302.34567 * 9 8 6 11 11 C 1.53037 * 109.27673 * 57.65515 * 10 9 8 12 12 N 1.46845 * 109.52369 * 300.81859 * 11 10 9 13 13 C 1.46896 * 111.00348 * 185.84450 * 12 11 10 14 14 C 1.53004 * 109.47368 * 67.59691 * 13 12 11 15 15 C 1.50700 * 109.47169 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99828 * 0.02562 * 15 14 13 17 17 C 1.37870 * 119.99643 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00565 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99897 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47039 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47232 * 119.99894 * 19 17 15 22 22 H 1.48506 * 109.46777 * 239.99817 * 19 17 15 23 23 H 1.08991 * 109.47214 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47022 * 300.00578 * 1 2 3 25 25 H 1.09004 * 109.46665 * 60.00044 * 1 2 3 26 26 H 1.08999 * 109.47460 * 239.99712 * 2 1 3 27 27 H 1.09004 * 109.47155 * 119.99761 * 2 1 3 28 28 H 0.96700 * 113.99758 * 60.00360 * 5 3 2 29 29 H 1.08995 * 109.50179 * 299.12392 * 8 6 3 30 30 H 1.09004 * 109.50512 * 59.24688 * 8 6 3 31 31 H 1.08999 * 109.52952 * 182.43883 * 9 8 6 32 32 H 1.09003 * 109.52055 * 62.25051 * 9 8 6 33 33 H 1.08991 * 109.50090 * 297.71112 * 10 9 8 34 34 H 1.09006 * 109.49993 * 177.59217 * 10 9 8 35 35 H 1.08997 * 109.46700 * 60.83864 * 11 10 9 36 36 H 1.08997 * 109.46019 * 180.81562 * 11 10 9 37 37 H 1.08996 * 109.47427 * 187.60523 * 13 12 11 38 38 H 1.09001 * 109.47017 * 307.60047 * 13 12 11 39 39 H 1.08991 * 109.47059 * 300.00736 * 14 13 12 40 40 H 1.09006 * 109.46167 * 60.00586 * 14 13 12 41 41 H 0.96998 * 120.00052 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5985 1.9840 -0.8366 5 8 1.6723 2.0778 1.2260 6 6 3.5638 1.4446 -0.1384 7 1 3.9189 2.4712 -0.2288 8 6 4.1889 0.7959 1.0986 9 6 5.7124 0.7819 0.9468 10 6 6.0830 0.0286 -0.3338 11 6 5.4030 0.6997 -1.5293 12 7 3.9473 0.6872 -1.3366 13 6 3.2542 1.1982 -2.5267 14 6 3.4424 0.2182 -3.6866 15 6 2.7319 0.7428 -4.9077 16 1 2.1997 1.6814 -4.8612 17 6 2.7613 0.0244 -6.0841 18 7 3.4097 -1.1184 -6.1408 19 14 1.8811 0.6749 -7.5980 20 1 1.2321 1.9708 -7.2746 21 1 2.8627 0.8724 -8.6946 22 1 0.8483 -0.3018 -8.0280 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0310 1.6484 2.0146 29 1 3.9169 1.3674 1.9860 30 1 3.8236 -0.2264 1.1973 31 1 6.1596 0.2817 1.8059 32 1 6.0820 1.8056 0.8872 33 1 5.7475 -1.0056 -0.2576 34 1 7.1643 0.0521 -0.4698 35 1 5.7494 1.7298 -1.6132 36 1 5.6532 0.1572 -2.4410 37 1 2.1914 1.3053 -2.3103 38 1 3.6688 2.1685 -2.8000 39 1 4.5052 0.1112 -3.9030 40 1 3.0277 -0.7521 -3.4132 41 1 3.4307 -1.6236 -6.9686 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304126255.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:43 Heat of formation + Delta-G solvation = -73.033356 kcal Electronic energy + Delta-G solvation = -18651.488904 eV Core-core repulsion = 15951.215114 eV Total energy + Delta-G solvation = -2700.273790 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.67335 -36.72156 -34.25415 -32.77011 -32.23048 -30.60906 -29.13591 -25.96446 -24.93953 -23.16628 -22.32728 -20.97756 -20.18252 -18.94532 -16.69378 -16.24182 -15.68054 -15.12756 -14.57005 -14.42483 -14.33751 -14.01405 -13.36257 -13.16395 -12.86795 -12.66443 -12.42799 -12.03644 -11.79452 -11.62283 -11.24829 -11.14634 -11.00484 -10.90547 -10.69794 -10.57586 -10.42986 -10.40413 -10.00553 -9.68789 -9.50313 -9.30525 -9.07879 -8.32915 -7.70399 -5.99849 -4.02036 3.31018 3.38680 3.42667 4.23540 4.48174 4.65596 4.83033 4.92720 5.04922 5.18101 5.36122 5.37279 5.38346 5.50772 5.63386 5.77485 5.81361 5.89458 5.96099 5.98852 6.04558 6.07403 6.11069 6.25576 6.28357 6.36964 6.42223 6.52496 6.53886 6.60634 6.69720 6.97750 7.49113 7.56995 7.74329 7.84176 7.89901 8.08083 8.43641 9.05470 9.61854 11.11408 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023148 B = 0.006805 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.292370 B = 4113.675367 C = 4906.489945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.109 3.891 4 H 0.101 0.899 5 O -0.565 6.565 6 C 0.054 3.946 7 H 0.038 0.962 8 C -0.116 4.116 9 C -0.117 4.117 10 C -0.116 4.116 11 C 0.055 3.945 12 N -0.525 5.525 13 C 0.055 3.945 14 C 0.031 3.969 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.095 0.905 27 H 0.058 0.942 28 H 0.367 0.633 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.024 0.976 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.019 0.981 39 H 0.016 0.984 40 H 0.024 0.976 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.474 2.534 14.875 15.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C 0.050 3.950 4 H 0.119 0.881 5 O -0.370 6.370 6 C -0.055 4.055 7 H 0.056 0.944 8 C -0.154 4.154 9 C -0.155 4.155 10 C -0.154 4.154 11 C -0.073 4.073 12 N -0.252 5.252 13 C -0.071 4.071 14 C -0.007 4.007 15 C -0.560 4.560 16 H 0.072 0.928 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.114 0.886 27 H 0.077 0.923 28 H 0.214 0.786 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.037 0.963 39 H 0.035 0.965 40 H 0.043 0.957 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.048 2.321 14.423 14.646 hybrid contribution 0.175 0.769 -0.773 1.104 sum 1.222 3.090 13.650 14.049 Atomic orbital electron populations 1.21721 0.96086 1.01085 1.01688 1.22151 0.95736 0.96778 1.03923 1.22087 0.92549 0.93830 0.86508 0.88088 1.86580 1.76824 1.57695 1.15864 1.22221 0.95637 0.95523 0.92126 0.94410 1.21663 0.95748 1.01504 0.96496 1.21533 0.95737 1.00217 0.97982 1.21595 0.99203 1.00337 0.94279 1.22099 0.87646 0.98632 0.98910 1.62048 1.06499 1.53718 1.02894 1.22459 0.97242 0.97528 0.89891 1.19074 0.97127 0.94344 0.90134 1.21231 1.32772 1.06433 0.95559 0.92806 1.24977 0.95531 0.94913 0.98812 1.69979 1.42377 1.13940 1.26899 0.86572 0.79532 0.78985 0.83136 1.19778 1.21053 1.20981 0.93142 0.93019 0.92741 0.88629 0.92330 0.78579 0.92157 0.90794 0.92272 0.92646 0.91146 0.92079 0.95797 0.89468 0.91615 0.96307 0.96545 0.95739 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.81 37.16 0.36 -1.65 16 2 C -0.15 -2.11 4.92 -26.73 -0.13 -2.25 16 3 C 0.11 1.59 2.31 -26.73 -0.06 1.53 16 4 H 0.10 1.67 6.38 -51.93 -0.33 1.34 16 5 O -0.56 -7.56 12.79 -35.23 -0.45 -8.01 16 6 C 0.05 0.80 1.91 -67.72 -0.13 0.67 16 7 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 8 C -0.12 -1.39 4.69 -26.65 -0.13 -1.51 16 9 C -0.12 -1.36 6.00 -26.61 -0.16 -1.52 16 10 C -0.12 -1.55 6.09 -26.65 -0.16 -1.72 16 11 C 0.06 0.91 5.30 -3.83 -0.02 0.89 16 12 N -0.53 -9.16 3.52 -226.70 -0.80 -9.95 16 13 C 0.06 1.15 4.23 -3.82 -0.02 1.13 16 14 C 0.03 0.78 4.94 -27.88 -0.14 0.64 16 15 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 19 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.65 7.84 -51.93 -0.41 0.25 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.10 1.63 6.83 -51.93 -0.35 1.28 16 27 H 0.06 0.74 6.82 -51.93 -0.35 0.39 16 28 H 0.37 3.65 7.21 45.56 0.33 3.98 16 29 H 0.06 0.60 6.76 -51.93 -0.35 0.25 16 30 H 0.07 0.90 6.66 -51.93 -0.35 0.55 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 1.64 6.29 -51.93 -0.33 1.31 16 37 H 0.07 1.34 5.43 -51.93 -0.28 1.06 16 38 H 0.02 0.40 8.11 -51.93 -0.42 -0.02 16 39 H 0.02 0.44 6.49 -51.93 -0.34 0.11 16 40 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 309.40 15.07 4.66 4.66 Total: -1.00 -29.63 309.40 -8.39 -38.03 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.53 Total: 1.76 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -0.99 Total: -17.16 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: -0.06 Total: -35.91 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.45 Total: -8.01 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.63 -8.39 -38.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304126255.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.008 kcal (2) G-P(sol) polarization free energy of solvation -29.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds