Wall clock time and date at job start Sun Mar 29 2020 22:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47561 * 2 1 4 4 H 1.09005 * 109.46955 * 305.50661 * 3 2 1 5 5 O 1.42902 * 109.47386 * 65.50344 * 3 2 1 6 6 C 1.52999 * 109.47540 * 185.50495 * 3 2 1 7 7 H 1.09000 * 109.46681 * 174.93759 * 6 3 2 8 8 C 1.53030 * 109.45476 * 294.91876 * 6 3 2 9 9 C 1.53118 * 109.27953 * 179.18597 * 8 6 3 10 10 C 1.53124 * 109.16035 * 302.34567 * 9 8 6 11 11 C 1.53037 * 109.27673 * 57.65515 * 10 9 8 12 12 N 1.46845 * 109.52369 * 300.81859 * 11 10 9 13 13 C 1.46896 * 111.00348 * 185.84450 * 12 11 10 14 14 C 1.53004 * 109.47368 * 67.59691 * 13 12 11 15 15 C 1.50700 * 109.47169 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99828 * 0.02562 * 15 14 13 17 17 C 1.37870 * 119.99643 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00565 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99897 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47039 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47232 * 119.99894 * 19 17 15 22 22 H 1.48506 * 109.46777 * 239.99817 * 19 17 15 23 23 H 1.08991 * 109.47214 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47022 * 300.00578 * 1 2 3 25 25 H 1.09004 * 109.46665 * 60.00044 * 1 2 3 26 26 H 1.08999 * 109.47460 * 239.99712 * 2 1 3 27 27 H 1.09004 * 109.47155 * 119.99761 * 2 1 3 28 28 H 0.96700 * 113.99758 * 60.00360 * 5 3 2 29 29 H 1.08995 * 109.50179 * 299.12392 * 8 6 3 30 30 H 1.09004 * 109.50512 * 59.24688 * 8 6 3 31 31 H 1.08999 * 109.52952 * 182.43883 * 9 8 6 32 32 H 1.09003 * 109.52055 * 62.25051 * 9 8 6 33 33 H 1.08991 * 109.50090 * 297.71112 * 10 9 8 34 34 H 1.09006 * 109.49993 * 177.59217 * 10 9 8 35 35 H 1.08997 * 109.46700 * 60.83864 * 11 10 9 36 36 H 1.08997 * 109.46019 * 180.81562 * 11 10 9 37 37 H 1.08996 * 109.47427 * 187.60523 * 13 12 11 38 38 H 1.09001 * 109.47017 * 307.60047 * 13 12 11 39 39 H 1.08991 * 109.47059 * 300.00736 * 14 13 12 40 40 H 1.09006 * 109.46167 * 60.00586 * 14 13 12 41 41 H 0.96998 * 120.00052 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5985 1.9840 -0.8366 5 8 1.6723 2.0778 1.2260 6 6 3.5638 1.4446 -0.1384 7 1 3.9189 2.4712 -0.2288 8 6 4.1889 0.7959 1.0986 9 6 5.7124 0.7819 0.9468 10 6 6.0830 0.0286 -0.3338 11 6 5.4030 0.6997 -1.5293 12 7 3.9473 0.6872 -1.3366 13 6 3.2542 1.1982 -2.5267 14 6 3.4424 0.2182 -3.6866 15 6 2.7319 0.7428 -4.9077 16 1 2.1997 1.6814 -4.8612 17 6 2.7613 0.0244 -6.0841 18 7 3.4097 -1.1184 -6.1408 19 14 1.8811 0.6749 -7.5980 20 1 1.2321 1.9708 -7.2746 21 1 2.8627 0.8724 -8.6946 22 1 0.8483 -0.3018 -8.0280 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0310 1.6484 2.0146 29 1 3.9169 1.3674 1.9860 30 1 3.8236 -0.2264 1.1973 31 1 6.1596 0.2817 1.8059 32 1 6.0820 1.8056 0.8872 33 1 5.7475 -1.0056 -0.2576 34 1 7.1643 0.0521 -0.4698 35 1 5.7494 1.7298 -1.6132 36 1 5.6532 0.1572 -2.4410 37 1 2.1914 1.3053 -2.3103 38 1 3.6688 2.1685 -2.8000 39 1 4.5052 0.1112 -3.9030 40 1 3.0277 -0.7521 -3.4132 41 1 3.4307 -1.6236 -6.9686 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304126255.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:42 Heat of formation + Delta-G solvation = -92.654391 kcal Electronic energy + Delta-G solvation = -18652.339736 eV Core-core repulsion = 15951.215114 eV Total energy + Delta-G solvation = -2701.124622 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.91562 -37.92130 -35.89871 -34.44786 -33.54576 -31.81013 -30.93560 -27.26791 -26.59161 -24.71407 -23.54575 -22.19628 -21.84623 -20.13912 -18.61930 -17.54723 -17.05455 -16.54438 -16.38148 -15.70827 -15.43936 -15.42064 -14.61070 -14.59165 -14.36960 -13.95277 -13.88272 -13.64235 -13.12833 -12.91414 -12.87838 -12.76283 -12.45653 -12.33554 -12.04287 -11.99218 -11.78829 -11.65652 -11.46941 -11.29125 -11.07111 -10.97011 -10.61449 -10.52176 -9.15920 -8.20819 -6.31673 1.38490 1.38867 1.51981 2.38886 2.94462 3.12563 3.55773 3.69141 3.82514 3.94691 4.07068 4.20686 4.26555 4.37391 4.43474 4.49431 4.60722 4.68601 4.69709 4.79004 4.88847 4.93387 4.97975 5.04184 5.07283 5.11338 5.19102 5.25632 5.30862 5.41594 5.43641 5.50906 5.53450 5.68278 5.79634 6.11160 6.31171 6.34857 6.85329 6.86191 7.37309 8.91236 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023148 B = 0.006805 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.292370 B = 4113.675367 C = 4906.489945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.118 3.882 4 H 0.076 0.924 5 O -0.566 6.566 6 C 0.055 3.945 7 H 0.029 0.971 8 C -0.112 4.112 9 C -0.113 4.113 10 C -0.111 4.111 11 C 0.053 3.947 12 N -0.528 5.528 13 C 0.073 3.927 14 C 0.042 3.958 15 C -0.544 4.544 16 H 0.056 0.944 17 C 0.004 3.996 18 N -0.929 5.929 19 Si 0.962 3.038 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.277 1.277 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.037 0.963 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.385 0.615 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.022 0.978 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.010 0.990 39 H -0.008 1.008 40 H -0.005 1.005 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.231 3.197 16.618 16.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C 0.059 3.941 4 H 0.093 0.907 5 O -0.374 6.374 6 C -0.054 4.054 7 H 0.047 0.953 8 C -0.149 4.149 9 C -0.150 4.150 10 C -0.148 4.148 11 C -0.075 4.075 12 N -0.254 5.254 13 C -0.054 4.054 14 C 0.005 3.995 15 C -0.583 4.583 16 H 0.074 0.926 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.787 3.213 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.202 1.202 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.235 0.765 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.028 0.972 39 H 0.011 0.989 40 H 0.013 0.987 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.812 2.987 16.197 16.490 hybrid contribution 0.272 0.551 -1.274 1.415 sum 1.084 3.538 14.922 15.374 Atomic orbital electron populations 1.21700 0.95514 1.01573 1.01533 1.22060 0.96224 0.96382 1.03334 1.21808 0.92146 0.93589 0.86606 0.90658 1.86558 1.76965 1.57807 1.16039 1.22321 0.96097 0.94981 0.92008 0.95324 1.21689 0.95811 1.01738 0.95693 1.21534 0.95546 1.00361 0.97604 1.21567 0.99741 0.99799 0.93723 1.22115 0.87456 0.98481 0.99465 1.61983 1.06786 1.54128 1.02544 1.22062 0.97845 0.95507 0.89979 1.18859 0.94989 0.94043 0.91612 1.21640 1.33114 1.06698 0.96801 0.92588 1.25904 0.96208 0.95053 1.02228 1.70107 1.43595 1.15224 1.27997 0.85443 0.78386 0.78675 0.78814 1.18799 1.20300 1.20216 0.92372 0.91632 0.94369 0.91939 0.90087 0.76462 0.89086 0.90607 0.89524 0.92345 0.91734 0.90475 0.95927 0.92760 0.91402 0.97216 0.98932 0.98690 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.81 71.98 0.71 -3.11 16 2 C -0.14 -3.94 4.92 30.59 0.15 -3.79 16 3 C 0.12 3.32 2.31 30.59 0.07 3.39 16 4 H 0.08 2.52 6.38 -2.38 -0.02 2.50 16 5 O -0.57 -13.68 12.79 -148.98 -1.91 -15.59 16 6 C 0.05 1.56 1.91 44.93 0.09 1.64 16 7 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 8 C -0.11 -2.32 4.69 30.64 0.14 -2.17 16 9 C -0.11 -2.27 6.00 30.68 0.18 -2.09 16 10 C -0.11 -2.81 6.09 30.65 0.19 -2.62 16 11 C 0.05 1.79 5.30 86.33 0.46 2.25 16 12 N -0.53 -18.81 3.52 -871.13 -3.07 -21.88 16 13 C 0.07 3.19 4.23 86.31 0.37 3.55 16 14 C 0.04 2.29 4.94 29.85 0.15 2.44 16 15 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 16 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 17 C 0.00 0.24 5.46 84.65 0.46 0.71 16 18 N -0.93 -57.06 13.29 21.44 0.28 -56.78 16 19 Si 0.96 44.88 29.54 68.60 2.03 46.90 16 20 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.06 1.52 7.84 -2.39 -0.02 1.50 16 25 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.06 2.17 6.83 -2.39 -0.02 2.16 16 27 H 0.08 1.86 6.82 -2.39 -0.02 1.84 16 28 H 0.39 6.14 7.21 -74.06 -0.53 5.60 16 29 H 0.09 1.38 6.76 -2.39 -0.02 1.37 16 30 H 0.08 1.59 6.66 -2.39 -0.02 1.57 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.05 2.17 6.29 -2.39 -0.02 2.16 16 37 H 0.07 2.90 5.43 -2.39 -0.01 2.88 16 38 H 0.01 0.43 8.11 -2.39 -0.02 0.41 16 39 H -0.01 -0.44 6.49 -2.39 -0.02 -0.46 16 40 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 41 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -65.61 309.40 0.99 -64.62 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.46 Total: 13.86 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 3.19 Total: -31.13 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -2.78 Total: -78.66 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -1.91 Total: -15.59 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -65.61 0.99 -64.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304126255.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.037 kcal (2) G-P(sol) polarization free energy of solvation -65.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds