Wall clock time and date at job start Sun Mar 29 2020 22:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46941 * 2 1 4 4 O 1.42904 * 109.46855 * 240.00535 * 2 1 3 5 5 C 1.52990 * 109.47409 * 120.00146 * 2 1 3 6 6 H 1.09000 * 110.33766 * 304.20427 * 5 2 1 7 7 C 1.54913 * 110.37223 * 66.45415 * 5 2 1 8 8 C 1.55143 * 101.65019 * 155.90161 * 7 5 2 9 9 C 1.54315 * 103.01901 * 324.34318 * 8 7 5 10 10 N 1.47445 * 107.23619 * 22.29083 * 9 8 7 11 11 C 1.46891 * 111.00493 * 123.25089 * 10 9 8 12 12 C 1.52998 * 109.47018 * 54.53005 * 11 10 9 13 13 C 1.53004 * 109.47551 * 177.09893 * 12 11 10 14 14 C 1.50693 * 109.47667 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99819 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00301 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99542 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00083 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47062 * 59.99352 * 18 16 14 20 20 H 1.48497 * 109.47072 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47036 * 299.99809 * 18 16 14 22 22 H 1.08998 * 109.47530 * 299.99615 * 1 2 3 23 23 H 1.09007 * 109.47269 * 59.99897 * 1 2 3 24 24 H 1.08997 * 109.46746 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47073 * 179.97438 * 3 2 1 26 26 H 1.09003 * 109.47296 * 300.00615 * 3 2 1 27 27 H 1.08998 * 109.46694 * 59.99873 * 3 2 1 28 28 H 0.96690 * 114.00348 * 299.99308 * 4 2 1 29 29 H 1.08997 * 110.99320 * 273.98935 * 7 5 2 30 30 H 1.09000 * 110.98994 * 37.80789 * 7 5 2 31 31 H 1.08995 * 110.70370 * 82.73126 * 8 7 5 32 32 H 1.09001 * 110.70002 * 205.96451 * 8 7 5 33 33 H 1.09000 * 109.89189 * 262.88001 * 9 8 7 34 34 H 1.09006 * 109.88348 * 141.69180 * 9 8 7 35 35 H 1.09003 * 109.47375 * 174.53253 * 11 10 9 36 36 H 1.08999 * 109.47623 * 294.53587 * 11 10 9 37 37 H 1.08996 * 109.47777 * 297.09943 * 12 11 10 38 38 H 1.09004 * 109.46907 * 57.10523 * 12 11 10 39 39 H 1.09004 * 109.46908 * 300.00681 * 13 12 11 40 40 H 1.09003 * 109.46966 * 60.00131 * 13 12 11 41 41 H 0.97000 * 119.99684 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0401 -0.7212 1.2491 6 1 1.6247 -0.2636 2.1470 7 6 1.6729 -2.2251 1.1912 8 6 2.7502 -2.8465 2.1187 9 6 3.9948 -1.9794 1.8355 10 7 3.5177 -0.6946 1.2916 11 6 4.0008 0.4318 2.1011 12 6 5.5247 0.3599 2.2171 13 6 6.0346 1.5722 2.9989 14 6 7.5356 1.5017 3.1126 15 1 8.0723 0.6746 2.6717 16 6 8.2238 2.4924 3.7804 17 7 7.5702 3.4992 4.3177 18 14 10.0843 2.4046 3.9219 19 1 10.6846 2.4038 2.5636 20 1 10.5792 3.5813 4.6806 21 1 10.4684 1.1589 4.6335 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4426 0.0005 26 1 1.6765 1.9564 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.7211 -1.5951 -1.2331 29 1 0.6715 -2.3980 1.5855 30 1 1.7628 -2.6101 0.1755 31 1 2.4527 -2.7642 3.1640 32 1 2.9360 -3.8866 1.8505 33 1 4.6348 -2.4761 1.1062 34 1 4.5460 -1.8087 2.7603 35 1 3.7166 1.3700 1.6246 36 1 3.5581 0.3808 3.0958 37 1 5.8067 -0.5542 2.7396 38 1 5.9653 0.3591 1.2200 39 1 5.7527 2.4863 2.4763 40 1 5.5941 1.5730 3.9959 41 1 8.0543 4.1960 4.7878 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305187526.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:25 Heat of formation + Delta-G solvation = -63.713599 kcal Electronic energy + Delta-G solvation = -18284.457194 eV Core-core repulsion = 15584.587539 eV Total energy + Delta-G solvation = -2699.869655 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.89660 -36.80236 -34.23207 -32.50202 -32.26604 -30.05137 -28.12411 -27.20500 -26.07933 -23.29111 -21.67353 -21.24195 -19.70158 -19.25785 -16.94165 -16.49613 -15.99925 -15.22201 -14.66119 -14.40445 -14.26675 -13.84164 -13.42666 -12.76476 -12.64234 -12.35575 -12.21705 -12.06934 -12.04271 -11.91692 -11.53647 -11.38466 -11.17183 -10.93392 -10.75420 -10.64700 -10.53960 -10.45744 -10.27270 -9.76516 -9.57479 -9.27189 -9.01014 -8.30272 -7.91316 -5.95969 -3.97815 3.36330 3.40228 3.43241 4.03249 4.42491 4.49244 4.60118 4.61708 4.94426 5.02552 5.11813 5.18169 5.35273 5.39812 5.45729 5.59213 5.68737 5.76960 5.77299 5.84603 5.86720 5.90753 5.97667 6.00715 6.13982 6.19658 6.29704 6.34198 6.54418 6.77264 6.86275 7.15385 7.37002 7.48329 7.72417 7.82621 7.87889 8.04593 8.48287 9.09071 9.65897 11.15507 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035233 B = 0.004948 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.517691 B = 5658.064914 C = 6067.360173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.146 3.854 3 C -0.144 4.144 4 O -0.545 6.545 5 C 0.045 3.955 6 H 0.058 0.942 7 C -0.127 4.127 8 C -0.141 4.141 9 C 0.039 3.961 10 N -0.512 5.512 11 C 0.043 3.957 12 C -0.108 4.108 13 C 0.023 3.977 14 C -0.518 4.518 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.364 0.636 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.024 0.976 37 H 0.047 0.953 38 H 0.056 0.944 39 H 0.016 0.984 40 H 0.012 0.988 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.125 -10.429 -6.489 19.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.104 3.896 3 C -0.201 4.201 4 O -0.351 6.351 5 C -0.064 4.064 6 H 0.076 0.924 7 C -0.165 4.165 8 C -0.180 4.180 9 C -0.089 4.089 10 N -0.236 5.236 11 C -0.084 4.084 12 C -0.146 4.146 13 C -0.015 4.015 14 C -0.556 4.556 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.102 0.898 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.212 0.788 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.031 0.969 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.611 -9.596 -6.989 18.826 hybrid contribution 0.432 -0.586 1.227 1.427 sum -14.179 -10.182 -5.762 18.383 Atomic orbital electron populations 1.22524 0.96353 1.02099 1.02680 1.21021 0.90956 0.93148 0.84458 1.21880 1.03873 0.92907 1.01413 1.86622 1.77445 1.27924 1.43082 1.23262 0.89861 0.95513 0.97799 0.92399 1.22733 0.98618 0.94904 1.00259 1.22779 0.95958 0.99825 0.99389 1.22866 0.96517 0.89853 0.99626 1.63499 1.06360 1.02644 1.51097 1.22662 0.97918 0.93745 0.94047 1.21736 0.91375 1.00583 1.00918 1.19059 0.95599 0.92094 0.94715 1.21218 0.92338 1.07630 1.34461 0.92778 1.25020 0.98342 0.95462 0.95633 1.69957 1.35568 1.11429 1.36703 0.86665 0.85838 0.77357 0.78181 1.20211 1.21319 1.20303 0.91782 0.91773 0.92517 0.89845 0.92526 0.91777 0.78804 0.91177 0.90840 0.91717 0.91021 0.90784 0.91774 0.90339 0.95770 0.93458 0.92526 0.96597 0.96945 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 8.66 37.16 0.32 -1.36 16 2 C 0.15 1.76 0.95 -90.62 -0.09 1.68 16 3 C -0.14 -1.94 7.54 37.16 0.28 -1.66 16 4 O -0.54 -7.13 12.83 -35.23 -0.45 -7.58 16 5 C 0.04 0.56 1.91 -66.19 -0.13 0.44 16 6 H 0.06 0.76 7.71 -51.93 -0.40 0.36 16 7 C -0.13 -1.28 5.56 -24.59 -0.14 -1.42 16 8 C -0.14 -1.55 6.94 -24.91 -0.17 -1.72 16 9 C 0.04 0.56 6.17 -2.84 -0.02 0.54 16 10 N -0.51 -7.93 4.49 -223.39 -1.00 -8.93 16 11 C 0.04 0.78 4.36 -3.83 -0.02 0.77 16 12 C -0.11 -2.33 4.86 -26.73 -0.13 -2.46 16 13 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 14 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 15 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 18 Si 0.89 22.06 29.54 -169.99 -5.02 17.03 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 24 H 0.06 0.45 7.41 -51.93 -0.38 0.07 16 25 H 0.08 1.34 5.93 -51.93 -0.31 1.03 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 28 H 0.36 3.55 6.86 45.56 0.31 3.86 16 29 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 30 H 0.07 0.67 5.98 -51.93 -0.31 0.36 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.00 5.97 -51.93 -0.31 0.69 16 35 H 0.08 1.43 5.30 -51.93 -0.28 1.15 16 36 H 0.02 0.44 7.98 -51.93 -0.41 0.02 16 37 H 0.05 1.00 6.29 -51.93 -0.33 0.67 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 312.85 15.07 4.71 4.71 Total: -1.00 -31.35 312.85 -8.26 -39.61 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.60 Total: 0.34 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -0.63 Total: -18.53 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: -0.27 Total: -35.59 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -0.45 Total: -7.58 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.35 -8.26 -39.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305187526.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.107 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds