Wall clock time and date at job start Sun Mar 29 2020 22:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46959 * 2 1 4 4 O 1.42897 * 109.47301 * 240.00169 * 2 1 3 5 5 C 1.53000 * 109.47312 * 119.99785 * 2 1 3 6 6 H 1.08994 * 110.46502 * 303.85895 * 5 2 1 7 7 C 1.54378 * 110.41088 * 181.44096 * 5 2 1 8 8 C 1.54267 * 105.14962 * 217.42250 * 7 5 2 9 9 C 1.54377 * 105.05902 * 359.95016 * 8 7 5 10 10 N 1.48563 * 104.59662 * 23.85397 * 9 8 7 11 11 C 1.46905 * 110.99963 * 200.96184 * 10 9 8 12 12 C 1.52999 * 109.47346 * 69.56957 * 11 10 9 13 13 C 1.52997 * 109.46879 * 185.64531 * 12 11 10 14 14 C 1.50706 * 109.46823 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00046 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99661 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99655 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00493 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47186 * 90.00152 * 18 16 14 20 20 H 1.48491 * 109.47497 * 210.00638 * 18 16 14 21 21 H 1.48504 * 109.46979 * 330.00846 * 18 16 14 22 22 H 1.09000 * 109.47129 * 284.61688 * 1 2 3 23 23 H 1.09001 * 109.47196 * 44.62067 * 1 2 3 24 24 H 1.09000 * 109.46821 * 164.62035 * 1 2 3 25 25 H 1.09002 * 109.46807 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.46855 * 299.99771 * 3 2 1 27 27 H 1.08997 * 109.47285 * 60.00434 * 3 2 1 28 28 H 0.96695 * 114.00422 * 180.02562 * 4 2 1 29 29 H 1.08997 * 110.32335 * 98.47722 * 7 5 2 30 30 H 1.08997 * 110.32934 * 336.36863 * 7 5 2 31 31 H 1.08991 * 110.32224 * 118.84819 * 8 7 5 32 32 H 1.09005 * 110.32093 * 241.05977 * 8 7 5 33 33 H 1.08995 * 110.41384 * 142.63582 * 9 8 7 34 34 H 1.09006 * 110.41228 * 265.07454 * 9 8 7 35 35 H 1.09000 * 109.46911 * 189.57109 * 11 10 9 36 36 H 1.09000 * 109.46603 * 309.56944 * 11 10 9 37 37 H 1.08995 * 109.46850 * 305.64900 * 12 11 10 38 38 H 1.08997 * 109.46980 * 65.64651 * 12 11 10 39 39 H 1.08988 * 109.47426 * 300.00140 * 13 12 11 40 40 H 1.09001 * 109.46752 * 60.00372 * 13 12 11 41 41 H 0.97002 * 119.99845 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2493 6 1 1.6307 -0.2613 2.1486 7 6 3.5832 -0.7024 1.2895 8 6 3.9884 -2.0772 1.8599 9 6 2.6559 -2.8127 2.1185 10 7 1.6860 -2.1648 1.1984 11 6 0.3052 -2.3847 1.6492 12 6 0.0558 -1.5924 2.9340 13 6 -1.3329 -1.9304 3.4801 14 6 -1.5783 -1.1504 4.7460 15 1 -0.8199 -0.4804 5.1231 16 6 -2.7712 -1.2923 5.4228 17 7 -2.9855 -0.6113 6.5272 18 14 -4.0833 -2.4507 4.7703 19 1 -3.8808 -3.8037 5.3479 20 1 -5.4256 -1.9446 5.1537 21 1 -3.9865 -2.5249 3.2903 22 1 -0.3633 0.2593 0.9944 23 1 -0.3634 0.7315 -0.7218 24 1 -0.3633 -0.9909 -0.2726 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 2.9703 -0.7121 -1.2327 29 1 3.9352 0.0968 1.9418 30 1 3.9866 -0.5756 0.2849 31 1 4.5891 -2.6258 1.1346 32 1 4.5392 -1.9528 2.7923 33 1 2.7545 -3.8722 1.8823 34 1 2.3437 -2.6808 3.1545 35 1 -0.3869 -2.0507 0.8761 36 1 0.1505 -3.4465 1.8412 37 1 0.8112 -1.8543 3.6748 38 1 0.1120 -0.5252 2.7195 39 1 -2.0882 -1.6685 2.7393 40 1 -1.3890 -2.9976 3.6946 41 1 -3.8249 -0.7108 7.0032 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305187527.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:27 Heat of formation + Delta-G solvation = -54.021489 kcal Electronic energy + Delta-G solvation = -18732.653060 eV Core-core repulsion = 16033.203686 eV Total energy + Delta-G solvation = -2699.449373 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.05726 -36.71942 -34.40158 -32.55477 -32.14849 -30.36365 -28.03159 -27.14582 -26.35621 -23.52844 -21.42563 -20.87228 -20.41521 -19.07879 -16.91905 -16.59225 -16.12005 -15.25498 -14.56081 -14.26095 -14.17136 -13.89630 -13.53249 -13.03157 -12.51230 -12.41731 -12.33843 -12.27449 -11.98844 -11.86806 -11.57090 -11.37404 -11.19697 -11.07699 -11.01272 -10.66165 -10.54839 -10.22763 -9.89942 -9.85155 -9.58918 -9.55992 -9.23901 -8.54925 -7.93626 -6.05793 -4.03872 3.29978 3.37551 3.41652 4.09110 4.44309 4.54768 4.61378 4.71751 4.97859 5.10843 5.19094 5.22083 5.28286 5.45160 5.55643 5.61048 5.69563 5.75188 5.80311 5.88438 5.89257 5.95247 5.96493 6.07508 6.14052 6.15652 6.19347 6.27347 6.42998 6.51535 6.71053 6.89204 7.12095 7.26878 7.35697 7.41602 7.78252 7.87391 8.52406 8.98480 9.57077 11.07709 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028592 B = 0.006226 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.066841 B = 4495.980812 C = 4771.597016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.146 3.854 3 C -0.179 4.179 4 O -0.546 6.546 5 C 0.023 3.977 6 H 0.078 0.922 7 C -0.121 4.121 8 C -0.122 4.122 9 C 0.024 3.976 10 N -0.493 5.493 11 C 0.026 3.974 12 C -0.138 4.138 13 C -0.010 4.010 14 C -0.520 4.520 15 H 0.069 0.931 16 C 0.066 3.934 17 N -0.905 5.905 18 Si 0.880 3.120 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.265 1.265 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.365 0.635 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.016 0.984 40 H 0.010 0.990 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.663 -0.047 -12.756 17.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.105 3.895 3 C -0.237 4.237 4 O -0.352 6.352 5 C -0.085 4.085 6 H 0.096 0.904 7 C -0.159 4.159 8 C -0.160 4.160 9 C -0.104 4.104 10 N -0.215 5.215 11 C -0.101 4.101 12 C -0.176 4.176 13 C -0.048 4.048 14 C -0.558 4.558 15 H 0.087 0.913 16 C -0.135 4.135 17 N -0.544 5.544 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.189 1.189 22 H 0.095 0.905 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.212 0.788 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.034 0.966 40 H 0.028 0.972 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.911 -0.309 -13.278 17.841 hybrid contribution -0.276 -0.175 0.961 1.015 sum 11.635 -0.485 -12.317 16.951 Atomic orbital electron populations 1.22059 0.92648 1.03121 1.02691 1.20991 0.94885 0.89373 0.84277 1.22528 1.01252 0.97045 1.02846 1.86579 1.25695 1.79738 1.43161 1.23561 0.94867 0.91268 0.98840 0.90432 1.22322 0.95157 0.97544 1.00834 1.22250 0.97281 0.95779 1.00680 1.23151 0.91973 0.99075 0.96173 1.65571 1.02832 1.07022 1.46078 1.22726 0.89615 1.00602 0.97178 1.22118 1.00053 0.99579 0.95889 1.19498 0.92334 0.96375 0.96591 1.21150 1.02296 1.25472 1.06925 0.91289 1.25040 0.98253 0.95589 0.94636 1.69920 1.25326 1.41970 1.17142 0.86774 0.81136 0.81325 0.80052 1.20337 1.21389 1.18917 0.90523 0.92675 0.90601 0.92428 0.91859 0.91454 0.78775 0.91458 0.91717 0.91399 0.91654 0.90573 0.92983 0.89763 0.91413 0.92884 0.92248 0.96574 0.97177 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 7.49 37.16 0.28 -1.84 16 2 C 0.15 1.88 0.91 -90.62 -0.08 1.80 16 3 C -0.18 -1.93 8.50 37.16 0.32 -1.61 16 4 O -0.55 -7.21 12.74 -35.23 -0.45 -7.66 16 5 C 0.02 0.32 1.52 -65.98 -0.10 0.22 16 6 H 0.08 1.20 5.27 -51.93 -0.27 0.92 16 7 C -0.12 -1.31 5.34 -25.35 -0.14 -1.45 16 8 C -0.12 -1.34 7.00 -25.35 -0.18 -1.52 16 9 C 0.02 0.33 6.33 -2.18 -0.01 0.31 16 10 N -0.49 -7.28 5.10 -222.00 -1.13 -8.41 16 11 C 0.03 0.44 4.82 -3.82 -0.02 0.43 16 12 C -0.14 -2.70 3.92 -26.73 -0.10 -2.80 16 13 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 14 C -0.52 -14.90 9.66 -34.44 -0.33 -15.24 16 15 H 0.07 2.12 7.99 -52.49 -0.42 1.71 16 16 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 17 N -0.90 -28.07 13.96 55.43 0.77 -27.29 16 18 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 22 H 0.08 1.17 6.29 -51.93 -0.33 0.84 16 23 H 0.05 0.72 8.05 -51.93 -0.42 0.30 16 24 H 0.08 1.16 5.82 -51.93 -0.30 0.86 16 25 H 0.06 0.53 7.00 -51.93 -0.36 0.16 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.37 3.70 7.18 45.56 0.33 4.03 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.60 5.84 -51.93 -0.30 0.30 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.78 6.15 -51.93 -0.32 0.46 16 35 H 0.08 1.42 4.89 -51.93 -0.25 1.16 16 36 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 37 H 0.05 1.06 6.29 -51.93 -0.33 0.74 16 38 H 0.06 1.16 4.73 -51.93 -0.25 0.91 16 39 H 0.02 0.38 7.20 -51.94 -0.37 0.01 16 40 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 300.56 15.07 4.53 4.53 Total: -1.00 -31.10 300.56 -7.64 -38.74 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.12 Total: 3.05 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -0.58 Total: -20.22 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: -0.36 Total: -35.71 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.45 Total: -7.66 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.10 -7.64 -38.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305187527.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.279 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds