Wall clock time and date at job start Sun Mar 29 2020 22:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46959 * 2 1 4 4 O 1.42897 * 109.47301 * 240.00169 * 2 1 3 5 5 C 1.53000 * 109.47312 * 119.99785 * 2 1 3 6 6 H 1.08994 * 110.46502 * 303.85895 * 5 2 1 7 7 C 1.54378 * 110.41088 * 181.44096 * 5 2 1 8 8 C 1.54267 * 105.14962 * 217.42250 * 7 5 2 9 9 C 1.54377 * 105.05902 * 359.95016 * 8 7 5 10 10 N 1.48563 * 104.59662 * 23.85397 * 9 8 7 11 11 C 1.46905 * 110.99963 * 200.96184 * 10 9 8 12 12 C 1.52999 * 109.47346 * 69.56957 * 11 10 9 13 13 C 1.52997 * 109.46879 * 185.64531 * 12 11 10 14 14 C 1.50706 * 109.46823 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00046 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99661 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99655 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00493 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47186 * 90.00152 * 18 16 14 20 20 H 1.48491 * 109.47497 * 210.00638 * 18 16 14 21 21 H 1.48504 * 109.46979 * 330.00846 * 18 16 14 22 22 H 1.09000 * 109.47129 * 284.61688 * 1 2 3 23 23 H 1.09001 * 109.47196 * 44.62067 * 1 2 3 24 24 H 1.09000 * 109.46821 * 164.62035 * 1 2 3 25 25 H 1.09002 * 109.46807 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.46855 * 299.99771 * 3 2 1 27 27 H 1.08997 * 109.47285 * 60.00434 * 3 2 1 28 28 H 0.96695 * 114.00422 * 180.02562 * 4 2 1 29 29 H 1.08997 * 110.32335 * 98.47722 * 7 5 2 30 30 H 1.08997 * 110.32934 * 336.36863 * 7 5 2 31 31 H 1.08991 * 110.32224 * 118.84819 * 8 7 5 32 32 H 1.09005 * 110.32093 * 241.05977 * 8 7 5 33 33 H 1.08995 * 110.41384 * 142.63582 * 9 8 7 34 34 H 1.09006 * 110.41228 * 265.07454 * 9 8 7 35 35 H 1.09000 * 109.46911 * 189.57109 * 11 10 9 36 36 H 1.09000 * 109.46603 * 309.56944 * 11 10 9 37 37 H 1.08995 * 109.46850 * 305.64900 * 12 11 10 38 38 H 1.08997 * 109.46980 * 65.64651 * 12 11 10 39 39 H 1.08988 * 109.47426 * 300.00140 * 13 12 11 40 40 H 1.09001 * 109.46752 * 60.00372 * 13 12 11 41 41 H 0.97002 * 119.99845 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2493 6 1 1.6307 -0.2613 2.1486 7 6 3.5832 -0.7024 1.2895 8 6 3.9884 -2.0772 1.8599 9 6 2.6559 -2.8127 2.1185 10 7 1.6860 -2.1648 1.1984 11 6 0.3052 -2.3847 1.6492 12 6 0.0558 -1.5924 2.9340 13 6 -1.3329 -1.9304 3.4801 14 6 -1.5783 -1.1504 4.7460 15 1 -0.8199 -0.4804 5.1231 16 6 -2.7712 -1.2923 5.4228 17 7 -2.9855 -0.6113 6.5272 18 14 -4.0833 -2.4507 4.7703 19 1 -3.8808 -3.8037 5.3479 20 1 -5.4256 -1.9446 5.1537 21 1 -3.9865 -2.5249 3.2903 22 1 -0.3633 0.2593 0.9944 23 1 -0.3634 0.7315 -0.7218 24 1 -0.3633 -0.9909 -0.2726 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 2.9703 -0.7121 -1.2327 29 1 3.9352 0.0968 1.9418 30 1 3.9866 -0.5756 0.2849 31 1 4.5891 -2.6258 1.1346 32 1 4.5392 -1.9528 2.7923 33 1 2.7545 -3.8722 1.8823 34 1 2.3437 -2.6808 3.1545 35 1 -0.3869 -2.0507 0.8761 36 1 0.1505 -3.4465 1.8412 37 1 0.8112 -1.8543 3.6748 38 1 0.1120 -0.5252 2.7195 39 1 -2.0882 -1.6685 2.7393 40 1 -1.3890 -2.9976 3.6946 41 1 -3.8249 -0.7108 7.0032 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305187527.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:26 Heat of formation + Delta-G solvation = -76.767914 kcal Electronic energy + Delta-G solvation = -18733.639419 eV Core-core repulsion = 16033.203686 eV Total energy + Delta-G solvation = -2700.435732 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.15001 -37.81493 -36.02945 -34.38153 -33.21098 -31.98392 -29.06213 -28.14753 -28.04122 -24.98907 -22.92698 -22.19137 -21.53091 -20.28205 -18.94322 -17.73727 -17.31350 -16.51467 -16.14153 -15.75109 -15.51128 -14.95805 -14.92751 -14.44749 -14.19348 -13.72909 -13.57733 -13.36800 -13.17563 -13.16957 -12.91807 -12.68492 -12.53326 -12.32054 -12.13156 -12.02297 -11.81863 -11.66204 -11.62934 -11.41460 -11.26394 -11.02742 -10.78304 -10.64474 -9.20570 -8.32825 -6.37146 1.33143 1.34982 1.47334 2.33268 3.00727 3.02577 3.55662 3.61927 3.72789 4.00350 4.13096 4.14035 4.21027 4.23745 4.29511 4.47451 4.58017 4.65026 4.71603 4.81598 4.82230 4.87839 4.93604 4.97963 5.00361 5.04423 5.09289 5.16466 5.23676 5.27385 5.31862 5.36367 5.52974 5.56609 5.62765 6.00999 6.09600 6.25658 6.70241 7.02813 7.27804 8.84005 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028592 B = 0.006226 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.066841 B = 4495.980812 C = 4771.597016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.149 3.851 3 C -0.174 4.174 4 O -0.557 6.557 5 C 0.020 3.980 6 H 0.052 0.948 7 C -0.117 4.117 8 C -0.116 4.116 9 C 0.018 3.982 10 N -0.491 5.491 11 C 0.037 3.963 12 C -0.123 4.123 13 C -0.007 4.007 14 C -0.533 4.533 15 H 0.028 0.972 16 C 0.004 3.996 17 N -0.951 5.951 18 Si 0.950 3.050 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.246 1.246 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.380 0.620 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.031 0.969 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.042 0.958 38 H 0.054 0.946 39 H 0.020 0.980 40 H 0.015 0.985 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.538 -0.923 -14.813 20.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.108 3.892 3 C -0.232 4.232 4 O -0.365 6.365 5 C -0.089 4.089 6 H 0.070 0.930 7 C -0.155 4.155 8 C -0.154 4.154 9 C -0.110 4.110 10 N -0.213 5.213 11 C -0.091 4.091 12 C -0.162 4.162 13 C -0.045 4.045 14 C -0.571 4.571 15 H 0.046 0.954 16 C -0.192 4.192 17 N -0.592 5.592 18 Si 0.773 3.227 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.169 1.169 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.229 0.771 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.049 0.951 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.033 0.967 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.820 -1.186 -15.350 20.034 hybrid contribution -0.484 0.154 1.647 1.724 sum 12.336 -1.031 -13.702 18.466 Atomic orbital electron populations 1.22034 0.94186 1.02597 1.01844 1.20911 0.93852 0.90528 0.83943 1.22476 1.02578 0.95363 1.02777 1.86548 1.27191 1.79851 1.42872 1.23599 0.96920 0.90207 0.98125 0.92990 1.22358 0.92858 0.97817 1.02480 1.22254 0.95952 0.95566 1.01667 1.23248 0.93093 0.99928 0.94734 1.65612 1.01762 1.08104 1.45872 1.22555 0.91297 0.99910 0.95373 1.21942 0.97272 0.99908 0.97054 1.19444 0.94866 0.95693 0.94469 1.21487 1.01508 1.25271 1.08810 0.95382 1.26029 1.00947 0.97483 0.94778 1.70071 1.26351 1.43971 1.18803 0.85656 0.77673 0.78967 0.80381 1.19184 1.20797 1.16947 0.92252 0.91720 0.91795 0.90329 0.91333 0.92120 0.77092 0.90650 0.89365 0.89606 0.90886 0.89806 0.95071 0.89668 0.91343 0.93974 0.92718 0.96157 0.96666 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.19 7.49 71.98 0.54 -3.65 16 2 C 0.15 3.59 0.91 -10.79 -0.01 3.58 16 3 C -0.17 -3.39 8.50 71.98 0.61 -2.78 16 4 O -0.56 -13.24 12.74 -148.98 -1.90 -15.14 16 5 C 0.02 0.52 1.52 45.03 0.07 0.59 16 6 H 0.05 1.62 5.27 -2.39 -0.01 1.61 16 7 C -0.12 -2.24 5.34 31.49 0.17 -2.07 16 8 C -0.12 -2.26 7.00 31.49 0.22 -2.04 16 9 C 0.02 0.46 6.33 86.45 0.55 1.01 16 10 N -0.49 -13.92 5.10 -856.28 -4.37 -18.29 16 11 C 0.04 1.22 4.82 86.30 0.42 1.63 16 12 C -0.12 -4.90 3.92 30.59 0.12 -4.78 16 13 C -0.01 -0.32 4.04 29.85 0.12 -0.20 16 14 C -0.53 -31.43 9.66 25.60 0.25 -31.18 16 15 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 16 C 0.00 0.26 5.47 84.65 0.46 0.72 16 17 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 18 Si 0.95 45.01 27.47 68.60 1.88 46.90 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 21 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 22 H 0.06 1.84 6.29 -2.39 -0.02 1.82 16 23 H 0.06 1.63 8.05 -2.39 -0.02 1.61 16 24 H 0.06 1.92 5.82 -2.39 -0.01 1.90 16 25 H 0.08 1.19 7.00 -2.39 -0.02 1.17 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.38 6.35 7.18 -74.06 -0.53 5.82 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.28 5.84 -2.39 -0.01 1.27 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.03 0.93 6.15 -2.38 -0.01 0.91 16 35 H 0.09 2.81 4.89 -2.39 -0.01 2.80 16 36 H 0.07 2.23 8.09 -2.39 -0.02 2.21 16 37 H 0.04 1.74 6.29 -2.39 -0.02 1.73 16 38 H 0.05 2.22 4.73 -2.39 -0.01 2.20 16 39 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 40 H 0.01 0.71 7.57 -2.39 -0.02 0.69 16 41 H 0.27 15.78 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -67.79 300.56 -0.15 -67.94 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.42 Total: 18.00 kcal Atomic # 6 Polarization: -42.67 SS G_CDS: 3.51 Total: -39.15 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -4.07 Total: -78.54 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -1.90 Total: -15.14 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.90 kcal Total: -67.79 -0.15 -67.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305187527.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.828 kcal (2) G-P(sol) polarization free energy of solvation -67.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds