Wall clock time and date at job start Sun Mar 29 2020 23:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47275 * 2 1 4 4 H 1.09003 * 109.46555 * 301.72464 * 3 2 1 5 5 C 1.50701 * 109.47091 * 181.73152 * 3 2 1 6 6 H 1.08004 * 119.99402 * 245.31765 * 5 3 2 7 7 C 1.37874 * 120.00603 * 65.31230 * 5 3 2 8 8 N 1.31520 * 119.99568 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00407 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47079 * 90.00310 * 9 7 5 11 11 H 1.48500 * 109.47404 * 210.00534 * 9 7 5 12 12 H 1.48505 * 109.46849 * 330.00140 * 9 7 5 13 13 N 1.46892 * 109.47380 * 61.72872 * 3 2 1 14 14 C 1.46851 * 110.99938 * 212.41897 * 13 3 2 15 15 C 1.53037 * 109.52121 * 174.15850 * 14 13 3 16 16 C 1.53116 * 109.28068 * 59.18214 * 15 14 13 17 17 C 1.53121 * 109.15753 * 302.34402 * 16 15 14 18 18 C 1.46838 * 111.00479 * 88.20720 * 13 3 2 19 19 H 1.09001 * 109.45547 * 65.82512 * 18 13 3 20 20 C 1.52999 * 109.46265 * 305.85792 * 18 13 3 21 21 O 1.42901 * 109.47088 * 297.48610 * 20 18 13 22 22 C 1.42900 * 114.00020 * 179.97438 * 21 20 18 23 23 H 1.08998 * 109.47134 * 304.96552 * 1 2 3 24 24 H 1.09001 * 109.46601 * 64.95817 * 1 2 3 25 25 H 1.08998 * 109.46879 * 184.96074 * 1 2 3 26 26 H 1.08998 * 109.47585 * 239.99513 * 2 1 3 27 27 H 1.09004 * 109.46989 * 119.99471 * 2 1 3 28 28 H 0.97004 * 119.99664 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.46166 * 294.17405 * 14 13 3 30 30 H 1.09001 * 109.46232 * 54.15416 * 14 13 3 31 31 H 1.09004 * 109.50263 * 179.12056 * 15 14 13 32 32 H 1.09007 * 109.50448 * 299.23661 * 15 14 13 33 33 H 1.09005 * 109.52485 * 182.44191 * 16 15 14 34 34 H 1.08995 * 109.52637 * 62.24733 * 16 15 14 35 35 H 1.09006 * 109.50249 * 297.71109 * 17 16 15 36 36 H 1.08996 * 109.50449 * 177.59935 * 17 16 15 37 37 H 1.08999 * 109.47340 * 57.48621 * 20 18 13 38 38 H 1.09005 * 109.47318 * 177.48627 * 20 18 13 39 39 H 1.09001 * 109.47326 * 179.97438 * 22 21 20 40 40 H 1.08993 * 109.47241 * 300.00064 * 22 21 20 41 41 H 1.09002 * 109.46920 * 59.99877 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6517 1.9651 -0.8742 5 6 3.5465 1.4427 -0.0429 6 1 4.1104 1.8248 0.7952 7 6 4.2047 0.9550 -1.1519 8 7 3.5178 0.4901 -2.1726 9 14 6.0719 0.9559 -1.2054 10 1 6.5837 -0.3217 -0.6476 11 1 6.5268 1.0996 -2.6116 12 1 6.5896 2.0906 -0.3993 13 7 1.5849 2.1229 1.2197 14 6 1.3475 3.5502 0.9687 15 6 0.7383 4.1943 2.2161 16 6 1.6975 4.0171 3.3964 17 6 1.9660 2.5243 3.6059 18 6 2.5396 1.9285 2.3183 19 1 3.4788 2.4253 2.0752 20 6 2.7909 0.4324 2.5166 21 8 1.5707 -0.2099 2.8918 22 6 1.6958 -1.6178 3.1022 23 1 -0.3633 0.5889 0.8422 24 1 -0.3632 0.4350 -0.9311 25 1 -0.3633 -1.0238 0.0889 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.9809 0.1474 -2.9530 29 1 2.2924 4.0393 0.7321 30 1 0.6605 3.6621 0.1299 31 1 0.5767 5.2570 2.0349 32 1 -0.2134 3.7148 2.4454 33 1 1.2484 4.4363 4.2968 34 1 2.6356 4.5296 3.1835 35 1 1.0336 2.0185 3.8571 36 1 2.6816 2.3937 4.4177 37 1 3.1584 -0.0008 1.5864 38 1 3.5331 0.2896 3.3020 39 1 0.7272 -2.0306 3.3841 40 1 2.0403 -2.0932 2.1839 41 1 2.4155 -1.8035 3.8995 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307778908.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:03 Heat of formation + Delta-G solvation = -37.643373 kcal Electronic energy + Delta-G solvation = -19651.381205 eV Core-core repulsion = 16952.642040 eV Total energy + Delta-G solvation = -2698.739165 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.10609 -36.51074 -34.59141 -31.85475 -31.08371 -30.44224 -26.73676 -26.39233 -25.04940 -23.36678 -22.11719 -20.83508 -19.47177 -18.88929 -16.44845 -15.70329 -15.45246 -14.74932 -14.48650 -14.04176 -13.83398 -13.39149 -13.14075 -12.84492 -12.73985 -12.27897 -11.78986 -11.40110 -11.39690 -11.23476 -11.11900 -10.86328 -10.75336 -10.64090 -10.42196 -10.30964 -9.82880 -9.66941 -9.65419 -9.40833 -9.17663 -8.90201 -8.65909 -8.25706 -6.93604 -6.00330 -4.11113 3.23945 3.32279 3.34244 4.37633 4.58854 5.04549 5.25290 5.42476 5.46322 5.52069 5.77539 5.87823 5.93177 6.08069 6.10821 6.15266 6.16442 6.24070 6.42791 6.47959 6.51358 6.54269 6.57639 6.66584 6.76709 6.80956 6.87981 6.96828 7.06174 7.23921 7.37355 7.57693 7.73922 7.83248 7.94185 8.08145 8.18588 8.40584 8.62098 9.01634 9.55302 11.00745 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018946 B = 0.010718 C = 0.009430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.520785 B = 2611.891897 C = 2968.500017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.114 4.114 3 C 0.212 3.788 4 H 0.033 0.967 5 C -0.550 4.550 6 H 0.065 0.935 7 C 0.070 3.930 8 N -0.881 5.881 9 Si 0.882 3.118 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.519 5.519 14 C 0.062 3.938 15 C -0.114 4.114 16 C -0.117 4.117 17 C -0.111 4.111 18 C 0.103 3.897 19 H 0.057 0.943 20 C 0.054 3.946 21 O -0.369 6.369 22 C 0.032 3.968 23 H 0.057 0.943 24 H 0.027 0.973 25 H 0.019 0.981 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.260 0.740 29 H 0.026 0.974 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.049 0.951 37 H 0.100 0.900 38 H 0.023 0.977 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.899 1.260 8.695 9.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.152 4.152 3 C 0.106 3.894 4 H 0.051 0.949 5 C -0.589 4.589 6 H 0.083 0.917 7 C -0.134 4.134 8 N -0.519 5.519 9 Si 0.710 3.290 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.244 5.244 14 C -0.067 4.067 15 C -0.152 4.152 16 C -0.155 4.155 17 C -0.149 4.149 18 C -0.006 4.006 19 H 0.075 0.925 20 C -0.022 4.022 21 O -0.287 6.287 22 C -0.065 4.065 23 H 0.076 0.924 24 H 0.046 0.954 25 H 0.038 0.962 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.117 0.883 38 H 0.042 0.958 39 H 0.092 0.908 40 H 0.057 0.943 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -3.501 1.077 8.653 9.397 hybrid contribution 2.184 0.132 -0.480 2.240 sum -1.317 1.209 8.174 8.367 Atomic orbital electron populations 1.21626 0.99004 0.98258 1.00077 1.21844 0.92570 0.99095 1.01665 1.19262 0.92473 0.91460 0.86208 0.94925 1.21912 0.92753 1.41760 1.02431 0.91738 1.24936 0.97704 0.95182 0.95533 1.69945 1.35000 1.40973 1.05987 0.86762 0.86562 0.78386 0.77327 1.20673 1.21215 1.20024 1.62297 1.44998 1.09209 1.07865 1.21917 0.98624 0.90074 0.96086 1.21585 0.99176 0.98887 0.95561 1.21543 0.99117 0.97062 0.97758 1.21612 1.01477 0.94809 0.96995 1.21396 0.94940 0.93176 0.91084 0.92535 1.23082 0.85340 0.93707 1.00040 1.87965 1.32783 1.18546 1.89407 1.22589 1.00912 0.84042 0.98992 0.92441 0.95365 0.96161 0.91218 0.92271 0.92964 0.95531 0.91998 0.92977 0.91740 0.93047 0.92920 0.90904 0.93259 0.88272 0.95838 0.90776 0.94325 0.95533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.84 37.16 0.37 -2.44 16 2 C -0.11 -2.67 4.83 -26.73 -0.13 -2.80 16 3 C 0.21 5.15 1.60 -68.87 -0.11 5.04 16 4 H 0.03 0.90 7.60 -51.93 -0.39 0.50 16 5 C -0.55 -14.15 6.26 -34.44 -0.22 -14.37 16 6 H 0.06 1.65 4.90 -52.48 -0.26 1.39 16 7 C 0.07 1.85 5.32 -17.82 -0.09 1.75 16 8 N -0.88 -24.52 11.71 55.43 0.65 -23.87 16 9 Si 0.88 20.64 29.54 -169.99 -5.02 15.62 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.52 -10.94 3.52 -220.15 -0.77 -11.72 16 14 C 0.06 1.19 5.34 -3.83 -0.02 1.17 16 15 C -0.11 -1.82 6.09 -26.65 -0.16 -1.98 16 16 C -0.12 -1.79 6.00 -26.61 -0.16 -1.95 16 17 C -0.11 -1.87 5.21 -26.65 -0.14 -2.01 16 18 C 0.10 2.04 1.59 -67.73 -0.11 1.93 16 19 H 0.06 1.22 5.96 -51.93 -0.31 0.91 16 20 C 0.05 1.07 4.29 37.16 0.16 1.23 16 21 O -0.37 -6.97 8.61 -35.23 -0.30 -7.27 16 22 C 0.03 0.50 10.62 101.05 1.07 1.57 16 23 H 0.06 1.22 7.51 -51.93 -0.39 0.83 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 1.84 6.47 -51.93 -0.34 1.50 16 27 H 0.06 1.34 2.42 -51.93 -0.13 1.22 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.20 7.91 -51.93 -0.41 0.79 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.30 7.60 -51.93 -0.39 0.90 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 2.23 3.96 -51.93 -0.21 2.03 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.04 0.62 7.37 -51.93 -0.38 0.24 16 41 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 301.24 15.07 4.54 4.54 Total: -1.00 -26.95 301.24 -7.44 -34.39 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.99 Total: 1.16 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 0.46 Total: -12.85 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: -0.13 Total: -35.59 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.30 Total: -7.27 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -26.95 -7.44 -34.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307778908.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.255 kcal (2) G-P(sol) polarization free energy of solvation -26.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds