Wall clock time and date at job start Sun Mar 29 2020 23:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46972 * 2 1 4 4 H 1.08991 * 109.47502 * 54.36186 * 3 2 1 5 5 C 1.50700 * 109.46891 * 174.36164 * 3 2 1 6 6 H 1.08005 * 120.00024 * 114.81791 * 5 3 2 7 7 C 1.37877 * 120.00160 * 294.81649 * 5 3 2 8 8 N 1.31520 * 120.00054 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00097 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47086 * 60.00124 * 9 7 5 11 11 H 1.48503 * 109.46825 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47310 * 299.99629 * 9 7 5 13 13 N 1.46904 * 109.46817 * 294.35484 * 3 2 1 14 14 C 1.46846 * 110.99692 * 147.44810 * 13 3 2 15 15 C 1.53033 * 109.52719 * 185.84069 * 14 13 3 16 16 C 1.53114 * 109.27909 * 300.82578 * 15 14 13 17 17 C 1.53121 * 109.16434 * 57.64544 * 16 15 14 18 18 C 1.46842 * 111.00166 * 271.65683 * 13 3 2 19 19 H 1.08994 * 109.45787 * 294.17013 * 18 13 3 20 20 C 1.52993 * 109.46291 * 54.14745 * 18 13 3 21 21 O 1.42909 * 109.47334 * 62.99567 * 20 18 13 22 22 C 1.42901 * 114.00267 * 179.97438 * 21 20 18 23 23 H 1.09005 * 109.46828 * 65.01476 * 1 2 3 24 24 H 1.08997 * 109.47332 * 185.01285 * 1 2 3 25 25 H 1.08997 * 109.46989 * 305.01563 * 1 2 3 26 26 H 1.08997 * 109.47683 * 239.99814 * 2 1 3 27 27 H 1.09000 * 109.47067 * 119.99381 * 2 1 3 28 28 H 0.96999 * 120.00029 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.46579 * 305.86192 * 14 13 3 30 30 H 1.09003 * 109.46268 * 65.83475 * 14 13 3 31 31 H 1.08996 * 109.50808 * 180.87747 * 15 14 13 32 32 H 1.09006 * 109.49780 * 60.76215 * 15 14 13 33 33 H 1.09007 * 109.52216 * 297.74713 * 16 15 14 34 34 H 1.08999 * 109.52694 * 177.55512 * 16 15 14 35 35 H 1.08996 * 109.49812 * 62.29191 * 17 16 15 36 36 H 1.08996 * 109.50651 * 182.40648 * 17 16 15 37 37 H 1.09003 * 109.47409 * 182.99335 * 20 18 13 38 38 H 1.09000 * 109.47354 * 302.99882 * 20 18 13 39 39 H 1.09002 * 109.46972 * 179.97438 * 22 21 20 40 40 H 1.08991 * 109.47008 * 300.00410 * 22 21 20 41 41 H 1.09004 * 109.46831 * 60.00141 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9847 0.8351 5 6 3.5405 1.4448 0.1396 6 1 4.1574 1.8102 -0.6681 7 6 4.1258 0.9805 1.2984 8 7 3.3745 0.5360 2.2822 9 14 5.9857 0.9839 1.4717 10 1 6.4920 2.3744 1.3464 11 1 6.3599 0.4394 2.8017 12 1 6.5838 0.1414 0.4053 13 7 1.6647 2.0945 -1.2618 14 6 1.4095 3.5263 -1.0587 15 6 0.8824 4.1412 -2.3571 16 6 1.9168 3.9406 -3.4679 17 6 2.2006 2.4442 -3.6263 18 6 2.6896 1.8786 -2.2909 19 1 3.6102 2.3833 -1.9981 20 6 2.9552 0.3792 -2.4391 21 8 1.7662 -0.2730 -2.8899 22 6 1.9073 -1.6846 -3.0623 23 1 -0.3633 0.4341 -0.9316 24 1 -0.3634 -1.0237 0.0898 25 1 -0.3633 0.5897 0.8416 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 3.7863 0.2097 3.0976 29 1 0.6691 3.6549 -0.2691 30 1 2.3363 4.0233 -0.7718 31 1 0.7078 5.2071 -2.2105 32 1 -0.0517 3.6541 -2.6374 33 1 2.8385 4.4602 -3.2056 34 1 1.5272 4.3385 -4.4049 35 1 1.2874 1.9305 -3.9265 36 1 2.9679 2.2977 -4.3864 37 1 3.7534 0.2215 -3.1646 38 1 3.2532 -0.0340 -1.4755 39 1 0.9619 -2.1049 -3.4053 40 1 2.6835 -1.8846 -3.8007 41 1 2.1838 -2.1408 -2.1117 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307778909.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:04 Heat of formation + Delta-G solvation = -38.172057 kcal Electronic energy + Delta-G solvation = -19635.517165 eV Core-core repulsion = 16936.755075 eV Total energy + Delta-G solvation = -2698.762090 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.10449 -36.51985 -34.59630 -31.84956 -31.08667 -30.45979 -26.74119 -26.38462 -25.04785 -23.38036 -22.10051 -20.83952 -19.48381 -18.89461 -16.44012 -15.70709 -15.45758 -14.74934 -14.49308 -14.04840 -13.83997 -13.38367 -13.12886 -12.85238 -12.74320 -12.26664 -11.82587 -11.40626 -11.39377 -11.22255 -11.11631 -10.86081 -10.75268 -10.64892 -10.43539 -10.31481 -9.82330 -9.68683 -9.65733 -9.40350 -9.15671 -8.90212 -8.68618 -8.26306 -6.93344 -6.00032 -4.11128 3.25364 3.31489 3.33494 4.37677 4.58184 5.04556 5.25259 5.42559 5.46361 5.52146 5.77358 5.87331 5.93305 6.07954 6.10591 6.15173 6.16509 6.24197 6.42978 6.47917 6.51228 6.54112 6.57663 6.64583 6.76583 6.80965 6.86616 6.96931 7.06237 7.25050 7.35338 7.56629 7.73493 7.82443 7.93723 8.08084 8.18374 8.40774 8.62477 9.01554 9.55228 11.00837 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018855 B = 0.010683 C = 0.009443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.662819 B = 2620.293829 C = 2964.366032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.116 4.116 3 C 0.213 3.787 4 H 0.033 0.967 5 C -0.551 4.551 6 H 0.064 0.936 7 C 0.070 3.930 8 N -0.881 5.881 9 Si 0.882 3.118 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.519 5.519 14 C 0.062 3.938 15 C -0.114 4.114 16 C -0.117 4.117 17 C -0.111 4.111 18 C 0.103 3.897 19 H 0.057 0.943 20 C 0.054 3.946 21 O -0.369 6.369 22 C 0.032 3.968 23 H 0.051 0.949 24 H 0.019 0.981 25 H 0.030 0.970 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.261 0.739 29 H 0.061 0.939 30 H 0.026 0.974 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.049 0.951 37 H 0.024 0.976 38 H 0.100 0.900 39 H 0.074 0.926 40 H 0.027 0.973 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.310 1.019 -8.851 9.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.155 4.155 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.589 4.589 6 H 0.082 0.918 7 C -0.133 4.133 8 N -0.519 5.519 9 Si 0.710 3.290 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.244 5.244 14 C -0.067 4.067 15 C -0.152 4.152 16 C -0.155 4.155 17 C -0.149 4.149 18 C -0.006 4.006 19 H 0.075 0.925 20 C -0.022 4.022 21 O -0.288 6.288 22 C -0.066 4.066 23 H 0.070 0.930 24 H 0.039 0.961 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.042 0.958 38 H 0.117 0.883 39 H 0.092 0.908 40 H 0.045 0.955 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.913 0.828 -8.843 9.347 hybrid contribution 2.145 0.175 0.614 2.238 sum -0.768 1.003 -8.229 8.326 Atomic orbital electron populations 1.21614 0.99067 0.97882 1.00261 1.21875 0.92570 0.99212 1.01801 1.19277 0.93083 0.91657 0.85313 0.94941 1.21883 0.92999 1.42740 1.01319 0.91799 1.24935 0.97478 0.95148 0.95772 1.69933 1.34755 1.41652 1.05536 0.86822 0.86511 0.78362 0.77323 1.20380 1.21266 1.20266 1.62312 1.42666 1.09547 1.09893 1.21916 0.98892 0.90090 0.95796 1.21583 0.98945 0.98934 0.95748 1.21544 0.98863 0.97053 0.98019 1.21610 1.01425 0.94857 0.97001 1.21395 0.94611 0.93194 0.91388 0.92547 1.23079 0.85586 0.93474 1.00013 1.87962 1.35287 1.18048 1.87481 1.22592 1.00735 0.83900 0.99329 0.93003 0.96142 0.95078 0.92036 0.91086 0.92896 0.92005 0.95549 0.92976 0.91739 0.92922 0.93043 0.90896 0.93256 0.95812 0.88255 0.90756 0.95494 0.94309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.75 37.16 0.36 -2.42 16 2 C -0.12 -2.74 4.90 -26.73 -0.13 -2.87 16 3 C 0.21 5.18 1.56 -68.86 -0.11 5.07 16 4 H 0.03 0.89 7.60 -51.93 -0.39 0.50 16 5 C -0.55 -14.18 6.25 -34.44 -0.22 -14.40 16 6 H 0.06 1.63 4.90 -52.48 -0.26 1.37 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 8 N -0.88 -24.50 11.70 55.43 0.65 -23.85 16 9 Si 0.88 20.63 29.54 -169.99 -5.02 15.61 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 13 N -0.52 -10.99 3.87 -220.15 -0.85 -11.84 16 14 C 0.06 1.20 5.34 -3.84 -0.02 1.18 16 15 C -0.11 -1.82 6.09 -26.66 -0.16 -1.98 16 16 C -0.12 -1.79 6.00 -26.61 -0.16 -1.95 16 17 C -0.11 -1.88 5.21 -26.65 -0.14 -2.01 16 18 C 0.10 2.04 1.59 -67.73 -0.11 1.94 16 19 H 0.06 1.22 5.96 -51.93 -0.31 0.91 16 20 C 0.05 1.07 4.29 37.15 0.16 1.23 16 21 O -0.37 -7.00 8.58 -35.23 -0.30 -7.30 16 22 C 0.03 0.49 10.60 101.05 1.07 1.56 16 23 H 0.05 1.09 7.91 -51.93 -0.41 0.68 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.39 2.36 -51.93 -0.12 1.27 16 27 H 0.07 1.87 6.39 -51.93 -0.33 1.54 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.06 1.20 7.91 -51.93 -0.41 0.79 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.30 7.58 -51.93 -0.39 0.91 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 2.24 4.00 -51.93 -0.21 2.04 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.04 0.62 7.42 -51.93 -0.39 0.24 16 LS Contribution 301.78 15.07 4.55 4.55 Total: -1.00 -26.95 301.78 -7.53 -34.49 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.01 Total: 1.25 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 0.46 Total: -12.90 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.20 Total: -35.69 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.30 Total: -7.30 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -26.95 -7.53 -34.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307778909.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.685 kcal (2) G-P(sol) polarization free energy of solvation -26.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds