Wall clock time and date at job start Sun Mar 29 2020 23:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46972 * 2 1 4 4 H 1.08991 * 109.47502 * 54.36186 * 3 2 1 5 5 C 1.50700 * 109.46891 * 174.36164 * 3 2 1 6 6 H 1.08005 * 120.00024 * 114.81791 * 5 3 2 7 7 C 1.37877 * 120.00160 * 294.81649 * 5 3 2 8 8 N 1.31520 * 120.00054 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00097 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47086 * 60.00124 * 9 7 5 11 11 H 1.48503 * 109.46825 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47310 * 299.99629 * 9 7 5 13 13 N 1.46904 * 109.46817 * 294.35484 * 3 2 1 14 14 C 1.46846 * 110.99692 * 147.44810 * 13 3 2 15 15 C 1.53033 * 109.52719 * 185.84069 * 14 13 3 16 16 C 1.53114 * 109.27909 * 300.82578 * 15 14 13 17 17 C 1.53121 * 109.16434 * 57.64544 * 16 15 14 18 18 C 1.46842 * 111.00166 * 271.65683 * 13 3 2 19 19 H 1.08994 * 109.45787 * 294.17013 * 18 13 3 20 20 C 1.52993 * 109.46291 * 54.14745 * 18 13 3 21 21 O 1.42909 * 109.47334 * 62.99567 * 20 18 13 22 22 C 1.42901 * 114.00267 * 179.97438 * 21 20 18 23 23 H 1.09005 * 109.46828 * 65.01476 * 1 2 3 24 24 H 1.08997 * 109.47332 * 185.01285 * 1 2 3 25 25 H 1.08997 * 109.46989 * 305.01563 * 1 2 3 26 26 H 1.08997 * 109.47683 * 239.99814 * 2 1 3 27 27 H 1.09000 * 109.47067 * 119.99381 * 2 1 3 28 28 H 0.96999 * 120.00029 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.46579 * 305.86192 * 14 13 3 30 30 H 1.09003 * 109.46268 * 65.83475 * 14 13 3 31 31 H 1.08996 * 109.50808 * 180.87747 * 15 14 13 32 32 H 1.09006 * 109.49780 * 60.76215 * 15 14 13 33 33 H 1.09007 * 109.52216 * 297.74713 * 16 15 14 34 34 H 1.08999 * 109.52694 * 177.55512 * 16 15 14 35 35 H 1.08996 * 109.49812 * 62.29191 * 17 16 15 36 36 H 1.08996 * 109.50651 * 182.40648 * 17 16 15 37 37 H 1.09003 * 109.47409 * 182.99335 * 20 18 13 38 38 H 1.09000 * 109.47354 * 302.99882 * 20 18 13 39 39 H 1.09002 * 109.46972 * 179.97438 * 22 21 20 40 40 H 1.08991 * 109.47008 * 300.00410 * 22 21 20 41 41 H 1.09004 * 109.46831 * 60.00141 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9847 0.8351 5 6 3.5405 1.4448 0.1396 6 1 4.1574 1.8102 -0.6681 7 6 4.1258 0.9805 1.2984 8 7 3.3745 0.5360 2.2822 9 14 5.9857 0.9839 1.4717 10 1 6.4920 2.3744 1.3464 11 1 6.3599 0.4394 2.8017 12 1 6.5838 0.1414 0.4053 13 7 1.6647 2.0945 -1.2618 14 6 1.4095 3.5263 -1.0587 15 6 0.8824 4.1412 -2.3571 16 6 1.9168 3.9406 -3.4679 17 6 2.2006 2.4442 -3.6263 18 6 2.6896 1.8786 -2.2909 19 1 3.6102 2.3833 -1.9981 20 6 2.9552 0.3792 -2.4391 21 8 1.7662 -0.2730 -2.8899 22 6 1.9073 -1.6846 -3.0623 23 1 -0.3633 0.4341 -0.9316 24 1 -0.3634 -1.0237 0.0898 25 1 -0.3633 0.5897 0.8416 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 3.7863 0.2097 3.0976 29 1 0.6691 3.6549 -0.2691 30 1 2.3363 4.0233 -0.7718 31 1 0.7078 5.2071 -2.2105 32 1 -0.0517 3.6541 -2.6374 33 1 2.8385 4.4602 -3.2056 34 1 1.5272 4.3385 -4.4049 35 1 1.2874 1.9305 -3.9265 36 1 2.9679 2.2977 -4.3864 37 1 3.7534 0.2215 -3.1646 38 1 3.2532 -0.0340 -1.4755 39 1 0.9619 -2.1049 -3.4053 40 1 2.6835 -1.8846 -3.8007 41 1 2.1838 -2.1408 -2.1117 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307778909.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:04 Heat of formation + Delta-G solvation = -54.090926 kcal Electronic energy + Delta-G solvation = -19636.207459 eV Core-core repulsion = 16936.755075 eV Total energy + Delta-G solvation = -2699.452384 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.70472 -37.96629 -36.31423 -33.77545 -32.59561 -32.11555 -28.44916 -27.95590 -26.46992 -25.18067 -23.67997 -22.36914 -21.25574 -20.48642 -18.30672 -17.31100 -17.01555 -16.49444 -16.06688 -15.53062 -15.37889 -14.96637 -14.60766 -14.44453 -14.36378 -13.94426 -13.50069 -13.06222 -13.02559 -12.83420 -12.76390 -12.57098 -12.46177 -12.16947 -12.06376 -11.77380 -11.50441 -11.34804 -11.24318 -11.10654 -10.92168 -10.61537 -10.39097 -10.12633 -8.72737 -8.01076 -6.20360 1.37930 1.39219 1.45585 2.40904 3.13364 3.21363 3.45756 4.07200 4.10664 4.19544 4.49245 4.54180 4.55586 4.63952 4.68977 4.73884 4.77907 4.83047 4.86923 4.93931 5.00824 5.02996 5.08541 5.14038 5.18036 5.32307 5.32584 5.39693 5.43658 5.51219 5.64975 5.66824 5.78945 5.94297 6.15138 6.21491 6.47319 6.55253 6.85424 7.04471 7.49389 8.95929 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018855 B = 0.010683 C = 0.009443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.662819 B = 2620.293829 C = 2964.366032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.111 4.111 3 C 0.221 3.779 4 H -0.010 1.010 5 C -0.550 4.550 6 H 0.066 0.934 7 C 0.022 3.978 8 N -0.913 5.913 9 Si 0.940 3.060 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.268 1.268 13 N -0.518 5.518 14 C 0.058 3.942 15 C -0.105 4.105 16 C -0.114 4.114 17 C -0.102 4.102 18 C 0.099 3.901 19 H 0.037 0.963 20 C 0.060 3.940 21 O -0.381 6.381 22 C 0.026 3.974 23 H 0.055 0.945 24 H 0.038 0.962 25 H 0.020 0.980 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.259 0.741 29 H 0.051 0.949 30 H 0.008 0.992 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.042 0.958 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.047 0.953 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.224 1.320 -11.199 11.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.149 4.149 3 C 0.114 3.886 4 H 0.008 0.992 5 C -0.589 4.589 6 H 0.083 0.917 7 C -0.178 4.178 8 N -0.552 5.552 9 Si 0.766 3.234 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.193 1.193 13 N -0.243 5.243 14 C -0.070 4.070 15 C -0.143 4.143 16 C -0.152 4.152 17 C -0.140 4.140 18 C -0.009 4.009 19 H 0.054 0.946 20 C -0.016 4.016 21 O -0.300 6.300 22 C -0.070 4.070 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.039 0.961 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.026 0.974 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.065 0.935 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.828 1.132 -11.212 11.619 hybrid contribution 2.091 0.064 1.324 2.475 sum -0.737 1.196 -9.889 9.988 Atomic orbital electron populations 1.21472 0.97307 0.98859 0.99925 1.21754 0.94065 0.98439 1.00665 1.19038 0.92150 0.91860 0.85598 0.99167 1.22139 0.93943 1.41695 1.01143 0.91659 1.25627 1.01350 0.95183 0.95685 1.70072 1.36262 1.42890 1.05943 0.85896 0.81896 0.78339 0.77266 1.20175 1.21369 1.19320 1.62310 1.42903 1.10452 1.08585 1.22006 0.97928 0.89186 0.97930 1.21529 0.98970 1.00023 0.93768 1.21549 0.98701 0.95908 0.99005 1.21539 1.01562 0.95753 0.95179 1.21468 0.93423 0.93545 0.92511 0.94589 1.22860 0.86511 0.93346 0.98883 1.87926 1.34933 1.19852 1.87302 1.22792 1.02775 0.82044 0.99415 0.92611 0.94325 0.96116 0.90867 0.94436 0.93192 0.93049 0.97385 0.90572 0.91560 0.92966 0.90008 0.91398 0.91395 0.93969 0.91591 0.88498 0.93480 0.95473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.75 71.98 0.70 -4.34 16 2 C -0.11 -5.35 4.90 30.60 0.15 -5.20 16 3 C 0.22 11.07 1.56 44.17 0.07 11.14 16 4 H -0.01 -0.56 7.60 -2.39 -0.02 -0.58 16 5 C -0.55 -29.04 6.25 25.60 0.16 -28.88 16 6 H 0.07 3.38 4.90 -2.91 -0.01 3.37 16 7 C 0.02 1.17 5.30 84.65 0.45 1.62 16 8 N -0.91 -52.52 11.70 21.45 0.25 -52.27 16 9 Si 0.94 42.93 29.54 68.60 2.03 44.96 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 13 N -0.52 -21.98 3.87 -850.42 -3.29 -25.27 16 14 C 0.06 2.26 5.34 86.32 0.46 2.72 16 15 C -0.11 -3.11 6.09 30.64 0.19 -2.92 16 16 C -0.11 -3.11 6.00 30.67 0.18 -2.93 16 17 C -0.10 -3.18 5.21 30.65 0.16 -3.02 16 18 C 0.10 3.85 1.59 44.94 0.07 3.92 16 19 H 0.04 1.55 5.96 -2.39 -0.01 1.54 16 20 C 0.06 2.32 4.29 71.98 0.31 2.63 16 21 O -0.38 -13.77 8.58 -148.98 -1.28 -15.05 16 22 C 0.03 0.76 10.60 113.37 1.20 1.96 16 23 H 0.05 2.31 7.91 -2.38 -0.02 2.29 16 24 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.07 3.34 2.36 -2.39 -0.01 3.34 16 27 H 0.04 2.05 6.39 -2.39 -0.02 2.03 16 28 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.05 2.05 7.91 -2.39 -0.02 2.03 16 30 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.07 2.21 7.58 -2.39 -0.02 2.19 16 36 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 3.00 4.00 -2.39 -0.01 2.99 16 39 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.03 0.84 7.42 -2.38 -0.02 0.82 16 Total: -1.00 -58.95 301.78 2.79 -56.16 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.99 Total: 14.81 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 4.10 Total: -23.32 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -3.04 Total: -77.55 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -1.28 Total: -15.05 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -58.95 2.79 -56.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307778909.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.065 kcal (2) G-P(sol) polarization free energy of solvation -58.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds