Wall clock time and date at job start Sun Mar 29 2020 23:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47099 * 2 1 4 4 H 1.08996 * 109.47353 * 56.33478 * 3 2 1 5 5 C 1.50697 * 109.47135 * 176.33773 * 3 2 1 6 6 H 1.07999 * 120.00360 * 119.51900 * 5 3 2 7 7 C 1.37877 * 119.99824 * 299.51007 * 5 3 2 8 8 N 1.31519 * 120.00087 * 166.97553 * 7 5 3 9 9 Si 1.86799 * 120.00203 * 346.98418 * 7 5 3 10 10 H 1.48500 * 109.46901 * 264.47400 * 9 7 5 11 11 H 1.48499 * 109.46936 * 24.47538 * 9 7 5 12 12 H 1.48500 * 109.47069 * 144.47636 * 9 7 5 13 13 N 1.46909 * 109.47122 * 296.33579 * 3 2 1 14 14 C 1.46847 * 111.00005 * 301.37919 * 13 3 2 15 15 C 1.53031 * 109.52291 * 174.16355 * 14 13 3 16 16 C 1.53119 * 109.28275 * 59.17698 * 15 14 13 17 17 C 1.53125 * 109.15997 * 302.34685 * 16 15 14 18 18 C 1.46843 * 110.99710 * 177.16965 * 13 3 2 19 19 H 1.08998 * 109.46344 * 65.82467 * 18 13 3 20 20 C 1.53005 * 109.46254 * 305.85245 * 18 13 3 21 21 O 1.42900 * 109.46973 * 296.84822 * 20 18 13 22 22 C 1.42908 * 113.99701 * 180.02562 * 21 20 18 23 23 H 1.09002 * 109.46985 * 185.03072 * 1 2 3 24 24 H 1.09000 * 109.46981 * 305.02716 * 1 2 3 25 25 H 1.08995 * 109.47515 * 65.03446 * 1 2 3 26 26 H 1.09009 * 109.46967 * 240.00325 * 2 1 3 27 27 H 1.08996 * 109.47683 * 120.00416 * 2 1 3 28 28 H 0.96996 * 120.00369 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.45744 * 294.17608 * 14 13 3 30 30 H 1.09000 * 109.46545 * 54.14916 * 14 13 3 31 31 H 1.08999 * 109.50298 * 179.12414 * 15 14 13 32 32 H 1.09005 * 109.49969 * 299.23139 * 15 14 13 33 33 H 1.09003 * 109.52100 * 62.24957 * 16 15 14 34 34 H 1.08998 * 109.52684 * 182.44495 * 16 15 14 35 35 H 1.08991 * 109.50007 * 177.59064 * 17 16 15 36 36 H 1.09002 * 109.49865 * 297.71458 * 17 16 15 37 37 H 1.08999 * 109.46931 * 56.85123 * 20 18 13 38 38 H 1.09006 * 109.47069 * 176.84654 * 20 18 13 39 39 H 1.09003 * 109.47105 * 59.99545 * 22 21 20 40 40 H 1.08995 * 109.46899 * 179.97438 * 22 21 20 41 41 H 1.09003 * 109.46726 * 300.00237 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6240 1.9750 0.8553 5 6 3.5442 1.4435 0.0908 6 1 4.1326 1.8872 -0.6987 7 6 4.1694 0.8780 1.1818 8 7 5.4635 0.6458 1.1510 9 14 3.1782 0.4414 2.7038 10 1 3.2675 1.5502 3.6875 11 1 1.7581 0.2285 2.3254 12 1 3.7211 -0.8016 3.3083 13 7 1.6239 2.1090 -1.2413 14 6 2.1399 1.3988 -2.4185 15 6 1.5694 2.0328 -3.6890 16 6 1.9731 3.5088 -3.7428 17 6 1.4653 4.2149 -2.4825 18 6 2.0389 3.5176 -1.2468 19 1 3.1271 3.5755 -1.2695 20 6 1.5179 4.2075 0.0156 21 8 0.0890 4.1958 0.0096 22 6 -0.5021 4.8197 1.1514 23 1 -0.3633 -1.0237 0.0901 24 1 -0.3633 0.5898 0.8415 25 1 -0.3634 0.4337 -0.9316 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 5.9034 0.2484 1.9187 29 1 3.2277 1.4667 -2.4355 30 1 1.8422 0.3513 -2.3701 31 1 1.9648 1.5153 -4.5631 32 1 0.4824 1.9529 -3.6791 33 1 3.0592 3.5879 -3.7920 34 1 1.5326 3.9752 -4.6240 35 1 1.7864 5.2564 -2.4945 36 1 0.3766 4.1693 -2.4536 37 1 1.8820 3.6775 0.8958 38 1 1.8728 5.2379 0.0393 39 1 -0.1891 5.8627 1.1982 40 1 -1.5880 4.7698 1.0712 41 1 -0.1799 4.3027 2.0553 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307778911.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:06 Heat of formation + Delta-G solvation = -44.243009 kcal Electronic energy + Delta-G solvation = -19430.568390 eV Core-core repulsion = 16731.543044 eV Total energy + Delta-G solvation = -2699.025347 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.04843 -36.79326 -34.77571 -32.01471 -31.52869 -30.37125 -27.19440 -26.61112 -25.04401 -23.40257 -22.48313 -20.82682 -19.66327 -18.72312 -16.57812 -16.00225 -15.62023 -15.25944 -14.53112 -14.19752 -14.01741 -13.49197 -13.20454 -13.12794 -12.83042 -12.60012 -12.10085 -11.66090 -11.56945 -11.47213 -11.33363 -10.96933 -10.90240 -10.70334 -10.42334 -10.37389 -10.16462 -9.94820 -9.60641 -9.41809 -9.28495 -9.10036 -8.91229 -8.47917 -6.97915 -6.13054 -4.09403 3.24978 3.36115 3.40393 4.33434 4.40102 4.91240 5.19282 5.35825 5.38791 5.48704 5.59306 5.65620 5.84848 5.90622 5.92440 5.95996 6.08935 6.14048 6.18872 6.22063 6.35090 6.37392 6.44913 6.47090 6.52438 6.57914 6.72841 6.84463 6.86353 6.91922 7.01845 7.08814 7.30310 7.36338 7.62658 7.70800 8.24176 8.31021 8.47630 8.93067 9.54306 10.99862 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019233 B = 0.010860 C = 0.009272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.467004 B = 2577.691787 C = 3018.964438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 C 0.183 3.817 4 H 0.037 0.963 5 C -0.548 4.548 6 H 0.073 0.927 7 C 0.079 3.921 8 N -0.894 5.894 9 Si 0.854 3.146 10 H -0.284 1.284 11 H -0.239 1.239 12 H -0.288 1.288 13 N -0.511 5.511 14 C 0.058 3.942 15 C -0.116 4.116 16 C -0.118 4.118 17 C -0.107 4.107 18 C 0.098 3.902 19 H 0.059 0.941 20 C 0.068 3.932 21 O -0.371 6.371 22 C 0.031 3.969 23 H 0.028 0.972 24 H 0.040 0.960 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.262 0.738 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.038 0.962 39 H 0.031 0.969 40 H 0.077 0.923 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.336 5.408 -3.992 11.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.076 3.924 4 H 0.055 0.945 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.124 4.124 8 N -0.531 5.531 9 Si 0.681 3.319 10 H -0.211 1.211 11 H -0.163 1.163 12 H -0.214 1.214 13 N -0.235 5.235 14 C -0.070 4.070 15 C -0.154 4.154 16 C -0.156 4.156 17 C -0.145 4.145 18 C -0.011 4.011 19 H 0.077 0.923 20 C -0.009 4.009 21 O -0.290 6.290 22 C -0.066 4.066 23 H 0.047 0.953 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.096 0.904 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.800 5.232 -4.065 11.829 hybrid contribution 0.880 -0.125 1.344 1.611 sum -8.920 5.107 -2.721 10.633 Atomic orbital electron populations 1.21674 0.97574 0.98642 1.01632 1.22084 0.93830 0.99133 1.00916 1.19662 0.93758 0.90498 0.88530 0.94540 1.21632 0.90757 1.39148 1.07076 0.90891 1.24928 0.94580 0.94387 0.98527 1.69985 1.09815 1.42920 1.30384 0.87437 0.82797 0.78018 0.83629 1.21107 1.16336 1.21398 1.62282 1.58318 1.00184 1.02717 1.21956 0.97844 0.97789 0.89413 1.21610 1.01003 0.95267 0.97475 1.21550 1.00333 0.96244 0.97431 1.21539 1.01741 0.97356 0.93820 1.21433 0.97372 0.89827 0.92495 0.92295 1.22678 0.80612 0.97990 0.99578 1.87973 1.19846 1.79349 1.41789 1.22646 0.98492 0.95933 0.89547 0.95313 0.94044 0.92304 0.92719 0.92734 0.92823 0.94230 0.91200 0.92826 0.91931 0.92688 0.92954 0.93002 0.90841 0.91949 0.94423 0.95039 0.90412 0.94615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.73 37.16 0.36 -2.26 16 2 C -0.12 -2.66 4.31 -26.73 -0.12 -2.78 16 3 C 0.18 4.20 0.89 -68.86 -0.06 4.14 16 4 H 0.04 0.88 4.97 -51.93 -0.26 0.63 16 5 C -0.55 -14.61 7.68 -34.44 -0.26 -14.88 16 6 H 0.07 2.14 6.08 -52.49 -0.32 1.82 16 7 C 0.08 2.20 5.36 -17.82 -0.10 2.10 16 8 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16 9 Si 0.85 20.74 25.71 -169.99 -4.37 16.37 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.24 -5.48 5.14 56.52 0.29 -5.19 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 13 N -0.51 -10.42 3.90 -220.14 -0.86 -11.28 16 14 C 0.06 1.13 4.80 -3.84 -0.02 1.11 16 15 C -0.12 -1.84 6.09 -26.65 -0.16 -2.00 16 16 C -0.12 -1.78 6.00 -26.61 -0.16 -1.94 16 17 C -0.11 -1.73 5.21 -26.64 -0.14 -1.87 16 18 C 0.10 1.87 1.85 -67.72 -0.13 1.75 16 19 H 0.06 1.27 6.84 -51.93 -0.36 0.91 16 20 C 0.07 1.25 5.12 37.16 0.19 1.44 16 21 O -0.37 -6.58 9.81 -35.23 -0.35 -6.92 16 22 C 0.03 0.43 11.01 101.05 1.11 1.54 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 1.10 7.86 -51.93 -0.41 0.69 16 26 H 0.05 1.19 6.06 -51.92 -0.31 0.88 16 27 H 0.05 1.25 4.12 -51.93 -0.21 1.04 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.04 0.87 6.74 -51.93 -0.35 0.52 16 30 H 0.07 1.36 5.89 -51.93 -0.31 1.06 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.24 7.58 -51.93 -0.39 0.85 16 37 H 0.06 1.28 6.08 -51.93 -0.32 0.97 16 38 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 300.87 15.07 4.53 4.53 Total: -1.00 -28.84 300.87 -6.88 -35.72 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.13 Total: 1.17 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 0.52 Total: -13.65 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: -0.09 Total: -37.22 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.35 Total: -6.92 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.37 Total: 16.37 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.84 -6.88 -35.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307778911.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.526 kcal (2) G-P(sol) polarization free energy of solvation -28.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds