Wall clock time and date at job start Sun Mar 29 2020 23:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47099 * 2 1 4 4 H 1.08996 * 109.47353 * 56.33478 * 3 2 1 5 5 C 1.50697 * 109.47135 * 176.33773 * 3 2 1 6 6 H 1.07999 * 120.00360 * 119.51900 * 5 3 2 7 7 C 1.37877 * 119.99824 * 299.51007 * 5 3 2 8 8 N 1.31519 * 120.00087 * 166.97553 * 7 5 3 9 9 Si 1.86799 * 120.00203 * 346.98418 * 7 5 3 10 10 H 1.48500 * 109.46901 * 264.47400 * 9 7 5 11 11 H 1.48499 * 109.46936 * 24.47538 * 9 7 5 12 12 H 1.48500 * 109.47069 * 144.47636 * 9 7 5 13 13 N 1.46909 * 109.47122 * 296.33579 * 3 2 1 14 14 C 1.46847 * 111.00005 * 301.37919 * 13 3 2 15 15 C 1.53031 * 109.52291 * 174.16355 * 14 13 3 16 16 C 1.53119 * 109.28275 * 59.17698 * 15 14 13 17 17 C 1.53125 * 109.15997 * 302.34685 * 16 15 14 18 18 C 1.46843 * 110.99710 * 177.16965 * 13 3 2 19 19 H 1.08998 * 109.46344 * 65.82467 * 18 13 3 20 20 C 1.53005 * 109.46254 * 305.85245 * 18 13 3 21 21 O 1.42900 * 109.46973 * 296.84822 * 20 18 13 22 22 C 1.42908 * 113.99701 * 180.02562 * 21 20 18 23 23 H 1.09002 * 109.46985 * 185.03072 * 1 2 3 24 24 H 1.09000 * 109.46981 * 305.02716 * 1 2 3 25 25 H 1.08995 * 109.47515 * 65.03446 * 1 2 3 26 26 H 1.09009 * 109.46967 * 240.00325 * 2 1 3 27 27 H 1.08996 * 109.47683 * 120.00416 * 2 1 3 28 28 H 0.96996 * 120.00369 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.45744 * 294.17608 * 14 13 3 30 30 H 1.09000 * 109.46545 * 54.14916 * 14 13 3 31 31 H 1.08999 * 109.50298 * 179.12414 * 15 14 13 32 32 H 1.09005 * 109.49969 * 299.23139 * 15 14 13 33 33 H 1.09003 * 109.52100 * 62.24957 * 16 15 14 34 34 H 1.08998 * 109.52684 * 182.44495 * 16 15 14 35 35 H 1.08991 * 109.50007 * 177.59064 * 17 16 15 36 36 H 1.09002 * 109.49865 * 297.71458 * 17 16 15 37 37 H 1.08999 * 109.46931 * 56.85123 * 20 18 13 38 38 H 1.09006 * 109.47069 * 176.84654 * 20 18 13 39 39 H 1.09003 * 109.47105 * 59.99545 * 22 21 20 40 40 H 1.08995 * 109.46899 * 179.97438 * 22 21 20 41 41 H 1.09003 * 109.46726 * 300.00237 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6240 1.9750 0.8553 5 6 3.5442 1.4435 0.0908 6 1 4.1326 1.8872 -0.6987 7 6 4.1694 0.8780 1.1818 8 7 5.4635 0.6458 1.1510 9 14 3.1782 0.4414 2.7038 10 1 3.2675 1.5502 3.6875 11 1 1.7581 0.2285 2.3254 12 1 3.7211 -0.8016 3.3083 13 7 1.6239 2.1090 -1.2413 14 6 2.1399 1.3988 -2.4185 15 6 1.5694 2.0328 -3.6890 16 6 1.9731 3.5088 -3.7428 17 6 1.4653 4.2149 -2.4825 18 6 2.0389 3.5176 -1.2468 19 1 3.1271 3.5755 -1.2695 20 6 1.5179 4.2075 0.0156 21 8 0.0890 4.1958 0.0096 22 6 -0.5021 4.8197 1.1514 23 1 -0.3633 -1.0237 0.0901 24 1 -0.3633 0.5898 0.8415 25 1 -0.3634 0.4337 -0.9316 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 5.9034 0.2484 1.9187 29 1 3.2277 1.4667 -2.4355 30 1 1.8422 0.3513 -2.3701 31 1 1.9648 1.5153 -4.5631 32 1 0.4824 1.9529 -3.6791 33 1 3.0592 3.5879 -3.7920 34 1 1.5326 3.9752 -4.6240 35 1 1.7864 5.2564 -2.4945 36 1 0.3766 4.1693 -2.4536 37 1 1.8820 3.6775 0.8958 38 1 1.8728 5.2379 0.0393 39 1 -0.1891 5.8627 1.1982 40 1 -1.5880 4.7698 1.0712 41 1 -0.1799 4.3027 2.0553 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307778911.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:06 Heat of formation + Delta-G solvation = -63.446624 kcal Electronic energy + Delta-G solvation = -19431.401122 eV Core-core repulsion = 16731.543044 eV Total energy + Delta-G solvation = -2699.858078 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.60242 -38.17005 -36.41326 -34.09733 -32.97930 -31.89339 -28.98221 -27.97741 -26.37262 -25.08805 -24.16078 -22.29732 -21.24584 -20.45291 -18.52218 -17.58217 -17.06506 -16.70444 -16.21043 -15.68111 -15.59848 -15.02921 -14.81108 -14.58843 -14.43452 -14.19777 -13.73648 -13.31600 -13.18188 -12.85357 -12.75425 -12.68068 -12.52511 -12.18365 -12.13233 -11.82200 -11.72913 -11.52139 -11.34339 -11.06335 -10.86729 -10.78065 -10.60502 -10.34598 -8.75011 -8.31343 -6.30481 1.29563 1.35637 1.45468 2.33564 3.01023 3.05775 3.33844 4.00718 4.00998 4.15274 4.37244 4.42470 4.47243 4.50119 4.56547 4.61048 4.65867 4.68806 4.74367 4.84788 4.88069 4.91165 5.02482 5.08441 5.11653 5.17318 5.18913 5.25508 5.34881 5.40118 5.41717 5.53338 5.58103 5.67717 5.72235 6.23529 6.36615 6.50152 6.65964 6.79098 7.37073 8.85231 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019233 B = 0.010860 C = 0.009272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.467004 B = 2577.691787 C = 3018.964438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.189 3.811 4 H 0.032 0.968 5 C -0.536 4.536 6 H 0.031 0.969 7 C 0.022 3.978 8 N -0.944 5.944 9 Si 0.913 3.087 10 H -0.283 1.283 11 H -0.214 1.214 12 H -0.289 1.289 13 N -0.503 5.503 14 C 0.059 3.941 15 C -0.108 4.108 16 C -0.117 4.117 17 C -0.097 4.097 18 C 0.092 3.908 19 H 0.024 0.976 20 C 0.075 3.925 21 O -0.384 6.384 22 C 0.024 3.976 23 H 0.052 0.948 24 H 0.040 0.960 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.262 0.738 29 H 0.002 0.998 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.033 0.967 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.101 0.899 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.266 6.001 -4.391 14.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.161 4.161 3 C 0.081 3.919 4 H 0.049 0.951 5 C -0.575 4.575 6 H 0.049 0.951 7 C -0.176 4.176 8 N -0.584 5.584 9 Si 0.738 3.262 10 H -0.209 1.209 11 H -0.137 1.137 12 H -0.215 1.215 13 N -0.226 5.226 14 C -0.070 4.070 15 C -0.145 4.145 16 C -0.154 4.154 17 C -0.135 4.135 18 C -0.017 4.017 19 H 0.042 0.958 20 C -0.002 4.002 21 O -0.303 6.303 22 C -0.072 4.072 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.020 0.980 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.119 0.881 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -12.759 5.838 -4.478 14.729 hybrid contribution 1.832 -0.249 1.406 2.322 sum -10.928 5.590 -3.072 12.653 Atomic orbital electron populations 1.21555 0.94712 1.00280 1.01834 1.22025 0.96314 0.97661 1.00149 1.19532 0.90819 0.91730 0.89857 0.95052 1.21846 0.92858 1.37353 1.05442 0.95056 1.25728 0.95439 0.94780 1.01647 1.70126 1.11818 1.45065 1.31401 0.86481 0.82640 0.77497 0.79575 1.20937 1.13685 1.21528 1.62347 1.57555 1.00795 1.01946 1.21990 0.95740 0.98165 0.91056 1.21564 1.01386 0.95738 0.95843 1.21565 0.99888 0.95766 0.98188 1.21478 1.01502 0.98019 0.92498 1.21513 0.95648 0.89569 0.94985 0.95825 1.22489 0.81543 0.98502 0.97691 1.87927 1.18830 1.80103 1.43443 1.22879 0.99621 0.96611 0.88090 0.92910 0.94039 0.91908 0.93238 0.93854 0.92887 0.97986 0.91531 0.90937 0.90841 0.93784 0.89747 0.91241 0.90606 0.94852 0.92471 0.93228 0.88098 0.95119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 9.73 71.98 0.70 -3.75 16 2 C -0.12 -5.28 4.31 30.59 0.13 -5.15 16 3 C 0.19 8.71 0.89 44.17 0.04 8.75 16 4 H 0.03 1.51 4.97 -2.39 -0.01 1.50 16 5 C -0.54 -29.82 7.68 25.60 0.20 -29.63 16 6 H 0.03 1.97 6.08 -2.91 -0.02 1.95 16 7 C 0.02 1.27 5.36 84.65 0.45 1.73 16 8 N -0.94 -58.85 13.96 21.45 0.30 -58.55 16 9 Si 0.91 43.36 25.71 68.60 1.76 45.12 16 10 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 11 H -0.21 -9.22 5.14 99.48 0.51 -8.71 16 12 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 13 N -0.50 -20.43 3.90 -850.39 -3.32 -23.75 16 14 C 0.06 2.29 4.80 86.32 0.41 2.71 16 15 C -0.11 -3.21 6.09 30.64 0.19 -3.02 16 16 C -0.12 -3.27 6.00 30.68 0.18 -3.09 16 17 C -0.10 -2.96 5.21 30.65 0.16 -2.80 16 18 C 0.09 3.52 1.85 44.94 0.08 3.61 16 19 H 0.02 1.08 6.84 -2.39 -0.02 1.06 16 20 C 0.07 2.70 5.12 71.98 0.37 3.07 16 21 O -0.38 -12.79 9.81 -148.98 -1.46 -14.25 16 22 C 0.02 0.61 11.01 113.37 1.25 1.86 16 23 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.06 2.16 7.86 -2.39 -0.02 2.14 16 26 H 0.05 2.14 6.06 -2.38 -0.01 2.13 16 27 H 0.04 1.93 4.12 -2.39 -0.01 1.92 16 28 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 29 H 0.00 0.08 6.74 -2.39 -0.02 0.07 16 30 H 0.07 2.60 5.89 -2.39 -0.01 2.58 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.08 2.32 7.58 -2.39 -0.02 2.30 16 37 H 0.03 1.39 6.08 -2.39 -0.01 1.37 16 38 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 39 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -64.34 300.87 2.24 -62.10 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.79 Total: 15.04 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 4.17 Total: -25.71 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -3.02 Total: -82.30 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -1.46 Total: -14.25 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.76 Total: 45.12 kcal Total: -64.34 2.24 -62.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307778911.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.345 kcal (2) G-P(sol) polarization free energy of solvation -64.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds