Wall clock time and date at job start Sun Mar 29 2020 22:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47284 * 2 1 4 4 N 1.46895 * 109.47406 * 120.00432 * 2 1 3 5 5 C 1.46906 * 110.99789 * 299.99534 * 4 2 1 6 6 C 1.53002 * 109.47053 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.46999 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00290 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00355 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99521 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00556 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47278 * 89.99815 * 11 9 7 13 13 H 1.48498 * 109.47109 * 210.00244 * 11 9 7 14 14 H 1.48502 * 109.46821 * 329.99631 * 11 9 7 15 15 C 1.53004 * 109.46773 * 240.00285 * 2 1 3 16 16 C 1.53184 * 109.54323 * 174.82412 * 15 2 1 17 17 C 1.53100 * 109.15435 * 183.23744 * 16 15 2 18 18 O 1.42903 * 109.48847 * 57.47598 * 17 16 15 19 19 C 1.42900 * 114.09616 * 298.88414 * 18 17 16 20 20 C 1.53101 * 109.41553 * 61.16002 * 19 18 17 21 21 H 1.09007 * 109.46476 * 300.00168 * 1 2 3 22 22 H 1.08992 * 109.47092 * 59.99731 * 1 2 3 23 23 H 1.08993 * 109.47354 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46930 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.47133 * 300.00442 * 3 2 1 26 26 H 1.08997 * 109.46976 * 60.00444 * 3 2 1 27 27 H 1.00902 * 111.00273 * 63.95056 * 4 2 1 28 28 H 1.08992 * 109.47459 * 299.99826 * 5 4 2 29 29 H 1.09004 * 109.47040 * 59.99976 * 5 4 2 30 30 H 1.09001 * 109.47142 * 300.00160 * 6 5 4 31 31 H 1.09004 * 109.47006 * 60.00213 * 6 5 4 32 32 H 0.96999 * 120.00022 * 179.97438 * 10 9 7 33 33 H 1.09006 * 109.54324 * 294.99887 * 15 2 1 34 34 H 1.08998 * 109.52090 * 303.05806 * 16 15 2 35 35 H 1.09000 * 109.52162 * 63.24402 * 16 15 2 36 36 H 1.09000 * 109.41179 * 297.49088 * 17 16 15 37 37 H 1.09002 * 109.48330 * 177.50158 * 17 16 15 38 38 H 1.08992 * 109.48369 * 301.17258 * 19 18 17 39 39 H 1.09008 * 109.48984 * 181.14274 * 19 18 17 40 40 H 1.09000 * 109.52230 * 182.48667 * 20 19 18 41 41 H 1.08996 * 109.52151 * 62.29293 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.5488 -0.0264 2.4210 6 6 2.0774 -0.7751 3.6462 7 6 1.5948 -0.0913 4.8995 8 1 0.9730 0.7888 4.8292 9 6 1.9472 -0.5894 6.1359 10 7 2.7049 -1.6610 6.2215 11 14 1.3484 0.2576 7.6894 12 1 0.0466 -0.3262 8.1012 13 1 2.3436 0.0630 8.7743 14 1 1.1792 1.7096 7.4277 15 6 2.0400 -0.7212 -1.2493 16 6 3.5662 -0.6104 -1.3179 17 6 4.0598 -1.2642 -2.6113 18 8 3.4341 -0.6358 -3.7320 19 6 2.0098 -0.7502 -3.7449 20 6 1.4335 -0.0739 -2.4981 21 1 -0.3632 0.5139 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 3.1301 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6768 1.9563 0.8900 27 1 1.7503 -1.6649 1.1908 28 1 1.9123 1.0010 2.4379 29 1 0.4589 -0.0265 2.4379 30 1 1.7135 -1.8024 3.6292 31 1 3.1673 -0.7753 3.6296 32 1 2.9531 -2.0112 7.0913 33 1 1.7522 -1.7718 -1.2069 34 1 3.8559 0.4403 -1.3087 35 1 4.0072 -1.1183 -0.4602 36 1 3.8066 -2.3243 -2.6009 37 1 5.1411 -1.1493 -2.6871 38 1 1.7297 -1.8036 -3.7493 39 1 1.6140 -0.2651 -4.6373 40 1 0.3508 -0.1984 -2.4837 41 1 1.6788 0.9880 -2.5135 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308856151.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:13 Heat of formation + Delta-G solvation = -68.401358 kcal Electronic energy + Delta-G solvation = -18200.649766 eV Core-core repulsion = 15500.576835 eV Total energy + Delta-G solvation = -2700.072931 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.94464 -37.58293 -34.10475 -32.57362 -31.21491 -30.42776 -28.10262 -27.21913 -25.36601 -23.91056 -23.25650 -21.02096 -20.13846 -18.50723 -16.40354 -16.21228 -16.06377 -15.26013 -14.93857 -14.42175 -14.32478 -14.27671 -13.79943 -13.49475 -12.73890 -12.68817 -12.39692 -12.07926 -11.83710 -11.68349 -11.55960 -11.22670 -11.04412 -10.92098 -10.86172 -10.58973 -10.46243 -10.31874 -10.13828 -9.84108 -9.49609 -9.28415 -9.09975 -8.34368 -7.72364 -5.99100 -4.01457 3.31937 3.38247 3.41565 3.84898 4.40900 4.55435 4.69519 4.84687 4.99011 5.05674 5.22601 5.30222 5.33636 5.36938 5.37347 5.49596 5.65106 5.67544 5.76684 5.81815 5.89122 5.97796 6.03501 6.06815 6.16892 6.28587 6.33388 6.40080 6.47781 6.55378 6.65406 7.04576 7.16474 7.55078 7.75455 7.86011 8.00391 8.10974 8.45470 9.06039 9.62307 11.12342 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047644 B = 0.004492 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.553731 B = 6231.725074 C = 6520.411303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.115 3.885 3 C -0.141 4.141 4 N -0.679 5.679 5 C 0.062 3.938 6 C 0.026 3.974 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.058 3.942 10 N -0.894 5.894 11 Si 0.891 3.109 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C -0.072 4.072 16 C -0.145 4.145 17 C 0.058 3.942 18 O -0.388 6.388 19 C 0.062 3.938 20 C -0.154 4.154 21 H 0.062 0.938 22 H 0.056 0.944 23 H 0.050 0.950 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.333 0.667 28 H 0.061 0.939 29 H 0.018 0.982 30 H 0.012 0.988 31 H 0.024 0.976 32 H 0.260 0.740 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.090 0.910 38 H 0.046 0.954 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.852 1.788 -18.195 18.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.023 3.977 3 C -0.199 4.199 4 N -0.309 5.309 5 C -0.065 4.065 6 C -0.012 4.012 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.143 4.143 10 N -0.533 5.533 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.091 4.091 16 C -0.182 4.182 17 C -0.018 4.018 18 O -0.307 6.307 19 C -0.015 4.015 20 C -0.192 4.192 21 H 0.080 0.920 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.151 0.849 28 H 0.079 0.921 29 H 0.036 0.964 30 H 0.030 0.970 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.044 2.098 -18.196 18.346 hybrid contribution -1.527 -0.055 1.271 1.988 sum -2.571 2.043 -16.925 17.240 Atomic orbital electron populations 1.22614 0.97825 1.01652 1.02106 1.20844 0.91558 0.94687 0.90602 1.21971 1.01990 0.94793 1.01107 1.60754 1.63136 1.05705 1.01275 1.22222 0.96238 0.98758 0.89331 1.19059 0.97127 0.94991 0.89994 1.21179 1.31451 1.12235 0.91052 0.92866 1.24997 0.95166 0.95057 0.99112 1.69975 1.36517 1.22444 1.24361 0.86605 0.78463 0.79947 0.83044 1.20737 1.21192 1.19895 1.21126 0.95492 0.99152 0.93331 1.22224 0.95556 1.02515 0.97937 1.22664 0.97558 0.95672 0.85944 1.87894 1.19255 1.78021 1.45500 1.22548 0.81374 0.99468 0.98094 1.22374 1.00573 1.01315 0.94914 0.91953 0.92551 0.93057 0.91624 0.92988 0.92364 0.84909 0.92109 0.96407 0.97009 0.95783 0.93029 0.91593 0.90864 0.89382 0.93566 0.89147 0.93557 0.89351 0.90905 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 7.75 37.16 0.29 -2.13 16 2 C 0.11 1.59 0.44 -131.60 -0.06 1.53 16 3 C -0.14 -1.96 7.51 37.16 0.28 -1.68 16 4 N -0.68 -11.64 5.62 -99.96 -0.56 -12.20 16 5 C 0.06 1.29 4.84 -3.82 -0.02 1.28 16 6 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -27.04 13.29 55.43 0.74 -26.31 16 11 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 C -0.07 -0.86 1.78 -90.43 -0.16 -1.02 16 16 C -0.14 -1.77 4.88 -26.58 -0.13 -1.89 16 17 C 0.06 0.64 6.84 37.21 0.25 0.90 16 18 O -0.39 -4.71 10.77 -35.23 -0.38 -5.09 16 19 C 0.06 0.62 6.84 37.21 0.25 0.87 16 20 C -0.15 -1.58 4.64 -26.59 -0.12 -1.71 16 21 H 0.06 0.92 6.40 -51.92 -0.33 0.59 16 22 H 0.06 0.64 6.43 -51.93 -0.33 0.30 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.94 6.28 -51.93 -0.33 0.61 16 25 H 0.05 0.62 6.50 -51.93 -0.34 0.28 16 26 H 0.06 0.88 6.40 -51.93 -0.33 0.55 16 27 H 0.33 5.65 8.72 -39.29 -0.34 5.31 16 28 H 0.06 1.28 6.30 -51.93 -0.33 0.95 16 29 H 0.02 0.37 6.30 -51.93 -0.33 0.04 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.94 6.18 -51.93 -0.32 0.61 16 35 H 0.09 1.19 7.86 -51.93 -0.41 0.78 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 40 H 0.07 0.68 6.56 -51.93 -0.34 0.34 16 41 H 0.07 0.80 6.43 -51.93 -0.33 0.47 16 LS Contribution 307.42 15.07 4.63 4.63 Total: -1.00 -29.96 307.42 -7.55 -37.51 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.99 Total: 1.60 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: 0.03 Total: -16.89 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.17 Total: -38.51 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.38 Total: -5.09 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.96 -7.55 -37.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308856151.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.890 kcal (2) G-P(sol) polarization free energy of solvation -29.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds