Wall clock time and date at job start Sun Mar 29 2020 22:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47284 * 2 1 4 4 N 1.46895 * 109.47406 * 120.00432 * 2 1 3 5 5 C 1.46906 * 110.99789 * 299.99534 * 4 2 1 6 6 C 1.53002 * 109.47053 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.46999 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00290 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00355 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99521 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00556 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47278 * 89.99815 * 11 9 7 13 13 H 1.48498 * 109.47109 * 210.00244 * 11 9 7 14 14 H 1.48502 * 109.46821 * 329.99631 * 11 9 7 15 15 C 1.53004 * 109.46773 * 240.00285 * 2 1 3 16 16 C 1.53184 * 109.54323 * 174.82412 * 15 2 1 17 17 C 1.53100 * 109.15435 * 183.23744 * 16 15 2 18 18 O 1.42903 * 109.48847 * 57.47598 * 17 16 15 19 19 C 1.42900 * 114.09616 * 298.88414 * 18 17 16 20 20 C 1.53101 * 109.41553 * 61.16002 * 19 18 17 21 21 H 1.09007 * 109.46476 * 300.00168 * 1 2 3 22 22 H 1.08992 * 109.47092 * 59.99731 * 1 2 3 23 23 H 1.08993 * 109.47354 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46930 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.47133 * 300.00442 * 3 2 1 26 26 H 1.08997 * 109.46976 * 60.00444 * 3 2 1 27 27 H 1.00902 * 111.00273 * 63.95056 * 4 2 1 28 28 H 1.08992 * 109.47459 * 299.99826 * 5 4 2 29 29 H 1.09004 * 109.47040 * 59.99976 * 5 4 2 30 30 H 1.09001 * 109.47142 * 300.00160 * 6 5 4 31 31 H 1.09004 * 109.47006 * 60.00213 * 6 5 4 32 32 H 0.96999 * 120.00022 * 179.97438 * 10 9 7 33 33 H 1.09006 * 109.54324 * 294.99887 * 15 2 1 34 34 H 1.08998 * 109.52090 * 303.05806 * 16 15 2 35 35 H 1.09000 * 109.52162 * 63.24402 * 16 15 2 36 36 H 1.09000 * 109.41179 * 297.49088 * 17 16 15 37 37 H 1.09002 * 109.48330 * 177.50158 * 17 16 15 38 38 H 1.08992 * 109.48369 * 301.17258 * 19 18 17 39 39 H 1.09008 * 109.48984 * 181.14274 * 19 18 17 40 40 H 1.09000 * 109.52230 * 182.48667 * 20 19 18 41 41 H 1.08996 * 109.52151 * 62.29293 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.5488 -0.0264 2.4210 6 6 2.0774 -0.7751 3.6462 7 6 1.5948 -0.0913 4.8995 8 1 0.9730 0.7888 4.8292 9 6 1.9472 -0.5894 6.1359 10 7 2.7049 -1.6610 6.2215 11 14 1.3484 0.2576 7.6894 12 1 0.0466 -0.3262 8.1012 13 1 2.3436 0.0630 8.7743 14 1 1.1792 1.7096 7.4277 15 6 2.0400 -0.7212 -1.2493 16 6 3.5662 -0.6104 -1.3179 17 6 4.0598 -1.2642 -2.6113 18 8 3.4341 -0.6358 -3.7320 19 6 2.0098 -0.7502 -3.7449 20 6 1.4335 -0.0739 -2.4981 21 1 -0.3632 0.5139 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 3.1301 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6768 1.9563 0.8900 27 1 1.7503 -1.6649 1.1908 28 1 1.9123 1.0010 2.4379 29 1 0.4589 -0.0265 2.4379 30 1 1.7135 -1.8024 3.6292 31 1 3.1673 -0.7753 3.6296 32 1 2.9531 -2.0112 7.0913 33 1 1.7522 -1.7718 -1.2069 34 1 3.8559 0.4403 -1.3087 35 1 4.0072 -1.1183 -0.4602 36 1 3.8066 -2.3243 -2.6009 37 1 5.1411 -1.1493 -2.6871 38 1 1.7297 -1.8036 -3.7493 39 1 1.6140 -0.2651 -4.6373 40 1 0.3508 -0.1984 -2.4837 41 1 1.6788 0.9880 -2.5135 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308856151.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:12 Heat of formation + Delta-G solvation = -87.956090 kcal Electronic energy + Delta-G solvation = -18201.497723 eV Core-core repulsion = 15500.576835 eV Total energy + Delta-G solvation = -2700.920888 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.94259 -38.70906 -35.81968 -34.29018 -32.13599 -31.84023 -29.74260 -28.32582 -26.69558 -25.48336 -24.19719 -22.58668 -21.42812 -19.64075 -18.45972 -17.31819 -16.95113 -16.60980 -16.26219 -16.06928 -15.53517 -15.37717 -15.00884 -14.58720 -14.35623 -13.94828 -13.87486 -13.28151 -13.17774 -13.01531 -12.90414 -12.67179 -12.53673 -12.43309 -12.20395 -11.81961 -11.81704 -11.52650 -11.44953 -11.29980 -11.15900 -10.93919 -10.55982 -10.32907 -9.15528 -8.20593 -6.31915 1.39361 1.40899 1.52037 2.39956 3.03824 3.12857 3.30226 3.68568 3.87382 4.03363 4.17908 4.24477 4.31121 4.38034 4.44261 4.51961 4.62359 4.68154 4.72542 4.77934 4.83598 4.86960 4.89219 4.98755 5.05764 5.08588 5.14657 5.17274 5.30563 5.37870 5.39121 5.48561 5.59040 5.70460 5.82112 6.18184 6.33561 6.36486 6.61805 6.85903 7.37438 8.91529 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047644 B = 0.004492 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.553731 B = 6231.725074 C = 6520.411303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.113 3.887 3 C -0.139 4.139 4 N -0.683 5.683 5 C 0.085 3.915 6 C 0.033 3.967 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.001 3.999 10 N -0.932 5.932 11 Si 0.965 3.035 12 H -0.272 1.272 13 H -0.281 1.281 14 H -0.264 1.264 15 C -0.067 4.067 16 C -0.142 4.142 17 C 0.061 3.939 18 O -0.403 6.403 19 C 0.058 3.942 20 C -0.148 4.148 21 H 0.043 0.957 22 H 0.081 0.919 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.041 0.959 27 H 0.334 0.666 28 H 0.057 0.943 29 H 0.020 0.980 30 H -0.011 1.011 31 H -0.008 1.008 32 H 0.264 0.736 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.098 0.902 38 H 0.054 0.946 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.011 2.576 -19.241 19.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.023 3.977 3 C -0.197 4.197 4 N -0.313 5.313 5 C -0.044 4.044 6 C -0.005 4.005 7 C -0.582 4.582 8 H 0.076 0.924 9 C -0.196 4.196 10 N -0.572 5.572 11 Si 0.790 3.210 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.188 1.188 15 C -0.086 4.086 16 C -0.180 4.180 17 C -0.016 4.016 18 O -0.323 6.323 19 C -0.018 4.018 20 C -0.185 4.185 21 H 0.062 0.938 22 H 0.100 0.900 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.060 0.940 27 H 0.152 0.848 28 H 0.075 0.925 29 H 0.038 0.962 30 H 0.007 0.993 31 H 0.010 0.990 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.125 0.875 40 H 0.106 0.894 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.211 2.891 -19.266 19.607 hybrid contribution -1.139 -0.327 1.546 1.947 sum -3.350 2.564 -17.720 18.215 Atomic orbital electron populations 1.22555 0.96802 1.01947 1.02428 1.20974 0.92358 0.94607 0.89806 1.21963 1.01465 0.94779 1.01463 1.60660 1.63561 1.05815 1.01282 1.21784 0.95916 0.97820 0.88897 1.18913 0.94992 0.94325 0.92228 1.21609 1.31679 1.12613 0.92291 0.92368 1.25959 0.95120 0.95669 1.02897 1.70110 1.37662 1.23974 1.25441 0.85445 0.78123 0.79145 0.78316 1.19703 1.20692 1.18783 1.21082 0.95281 0.99115 0.93149 1.22158 0.95837 1.01939 0.98031 1.22659 0.98063 0.95815 0.85044 1.87880 1.20559 1.78233 1.45606 1.22723 0.80293 1.00243 0.98589 1.22338 1.01330 1.00955 0.93922 0.93754 0.90048 0.92796 0.92485 0.90612 0.93970 0.84812 0.92474 0.96196 0.99300 0.98986 0.92775 0.91511 0.91582 0.91223 0.92854 0.88374 0.92731 0.87459 0.89392 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.38 7.75 71.98 0.56 -3.83 16 2 C 0.11 3.02 0.44 3.53 0.00 3.02 16 3 C -0.14 -3.72 7.51 71.98 0.54 -3.18 16 4 N -0.68 -23.64 5.62 -470.17 -2.64 -26.28 16 5 C 0.08 3.57 4.84 86.30 0.42 3.99 16 6 C 0.03 1.78 5.23 29.85 0.16 1.93 16 7 C -0.54 -31.42 9.11 25.60 0.23 -31.19 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 9 C 0.00 0.09 5.46 84.65 0.46 0.55 16 10 N -0.93 -57.43 13.29 21.45 0.28 -57.15 16 11 Si 0.97 44.63 29.54 68.60 2.03 46.65 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 14 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 15 C -0.07 -1.50 1.78 -10.67 -0.02 -1.52 16 16 C -0.14 -3.36 4.88 30.69 0.15 -3.21 16 17 C 0.06 1.26 6.84 72.02 0.49 1.75 16 18 O -0.40 -8.95 10.77 -148.98 -1.60 -10.56 16 19 C 0.06 0.98 6.84 72.02 0.49 1.48 16 20 C -0.15 -2.61 4.64 30.69 0.14 -2.47 16 21 H 0.04 1.25 6.40 -2.38 -0.02 1.24 16 22 H 0.08 1.59 6.43 -2.39 -0.02 1.57 16 23 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.06 1.61 6.28 -2.39 -0.01 1.60 16 25 H 0.08 1.64 6.50 -2.39 -0.02 1.63 16 26 H 0.04 1.25 6.40 -2.39 -0.02 1.23 16 27 H 0.33 11.47 8.72 -89.69 -0.78 10.69 16 28 H 0.06 2.45 6.30 -2.39 -0.02 2.43 16 29 H 0.02 0.83 6.30 -2.38 -0.02 0.82 16 30 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 31 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 32 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 33 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.07 1.65 6.18 -2.39 -0.01 1.63 16 35 H 0.07 1.90 7.86 -2.39 -0.02 1.88 16 36 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.10 1.84 8.14 -2.39 -0.02 1.83 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.09 1.32 6.56 -2.39 -0.02 1.30 16 41 H 0.07 1.34 6.43 -2.39 -0.02 1.33 16 Total: -1.00 -64.61 307.42 1.91 -62.70 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.22 Total: 17.31 kcal Atomic # 6 Polarization: -36.31 SS G_CDS: 3.63 Total: -32.68 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -2.36 Total: -83.43 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -1.60 Total: -10.56 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -64.61 1.91 -62.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308856151.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.253 kcal (2) G-P(sol) polarization free energy of solvation -64.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds