Wall clock time and date at job start Sun Mar 29 2020 22:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 5 5 H 1.09004 * 109.48117 * 305.02549 * 4 2 1 6 6 C 1.53089 * 109.48421 * 184.99895 * 4 2 1 7 7 C 1.53187 * 109.16518 * 182.40854 * 6 4 2 8 8 H 1.08998 * 109.53938 * 297.11457 * 7 6 4 9 9 N 1.46894 * 109.54258 * 176.84909 * 7 6 4 10 10 C 1.46897 * 111.00266 * 155.00074 * 9 7 6 11 11 C 1.52999 * 109.47885 * 179.97438 * 10 9 7 12 12 C 1.50692 * 109.47469 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00294 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00040 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99938 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00204 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47287 * 89.99913 * 16 14 12 18 18 H 1.48508 * 109.47197 * 210.00046 * 16 14 12 19 19 H 1.48506 * 109.46869 * 329.99663 * 16 14 12 20 20 C 1.53177 * 109.03282 * 56.98092 * 7 6 4 21 21 C 1.53086 * 109.16525 * 303.02045 * 20 7 6 22 22 O 1.42902 * 109.41543 * 57.61159 * 21 20 7 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.52544 * 302.31218 * 6 4 2 31 31 H 1.09004 * 109.52328 * 62.50738 * 6 4 2 32 32 H 1.00898 * 111.00598 * 31.04491 * 9 7 6 33 33 H 1.08999 * 109.46968 * 299.99976 * 10 9 7 34 34 H 1.09004 * 109.46743 * 59.99582 * 10 9 7 35 35 H 1.08999 * 109.46949 * 300.00172 * 11 10 9 36 36 H 1.09006 * 109.46636 * 59.99803 * 11 10 9 37 37 H 0.97000 * 119.99922 * 180.02562 * 15 14 12 38 38 H 1.09005 * 109.52245 * 62.92856 * 20 7 6 39 39 H 1.08996 * 109.51879 * 183.04735 * 20 7 6 40 40 H 1.09001 * 109.48323 * 177.59527 * 21 20 7 41 41 H 1.08997 * 109.48085 * 297.61492 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 1.6052 -1.7197 -1.2954 6 6 3.5658 -0.8312 -1.1880 7 6 4.0734 -1.5002 -2.4692 8 1 3.6792 -2.5145 -2.5316 9 7 5.5417 -1.5419 -2.4531 10 6 6.0465 -2.6366 -3.2925 11 6 7.5759 -2.6476 -3.2512 12 6 8.0937 -3.7702 -4.1128 13 1 7.4013 -4.4121 -4.6371 14 6 9.4515 -3.9786 -4.2309 15 7 10.2948 -3.1973 -3.5920 16 14 10.0934 -5.3707 -5.2984 17 1 10.2999 -4.8774 -6.6838 18 1 11.3836 -5.8607 -4.7500 19 1 9.1071 -6.4808 -5.3101 20 6 3.5970 -0.6898 -3.6785 21 6 2.0701 -0.5853 -3.6434 22 8 1.6633 0.0173 -2.4131 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4425 0.0005 30 1 3.9996 0.1649 -1.1008 31 1 3.8534 -1.4317 -0.3250 32 1 5.8910 -1.6191 -1.5097 33 1 5.6658 -3.5868 -2.9180 34 1 5.7122 -2.4907 -4.3197 35 1 7.9563 -1.6973 -3.6259 36 1 7.9106 -2.7933 -2.2241 37 1 11.2500 -3.3437 -3.6755 38 1 4.0314 0.3093 -3.6415 39 1 3.9079 -1.1884 -4.5965 40 1 1.7283 0.0265 -4.4783 41 1 1.6356 -1.5819 -3.7214 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308860308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:40 Heat of formation + Delta-G solvation = -78.077743 kcal Electronic energy + Delta-G solvation = -17773.770426 eV Core-core repulsion = 15073.277895 eV Total energy + Delta-G solvation = -2700.492531 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.79222 -36.30674 -35.16075 -33.32005 -31.53209 -30.12803 -28.45282 -27.23977 -24.80983 -23.60071 -23.17883 -20.53449 -20.12376 -19.77210 -16.47837 -16.21580 -15.86912 -15.23438 -14.94266 -14.74832 -14.39504 -14.08208 -13.81816 -13.32708 -12.95329 -12.79720 -12.45861 -12.13965 -12.00332 -11.74823 -11.61690 -11.17517 -11.11894 -10.96462 -10.87720 -10.74108 -10.61284 -10.41813 -10.20280 -9.91943 -9.61128 -9.29085 -9.10519 -8.35831 -7.83645 -6.00173 -4.02912 3.31664 3.37658 3.40749 3.75247 4.37484 4.50260 4.66649 4.78984 4.92689 5.00471 5.11345 5.18366 5.30301 5.35687 5.39413 5.50265 5.57906 5.60977 5.69531 5.71698 5.79548 5.83152 5.95184 5.97717 6.09076 6.15346 6.26569 6.31226 6.36414 6.37010 6.53513 6.98075 7.24783 7.49411 7.72587 7.82337 7.95817 8.08333 8.43160 9.04358 9.60884 11.11251 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.051371 B = 0.003920 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.920303 B = 7140.979182 C = 7366.425114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.144 4.144 4 C 0.099 3.901 5 H 0.054 0.946 6 C -0.153 4.153 7 C 0.086 3.914 8 H 0.037 0.963 9 N -0.686 5.686 10 C 0.066 3.934 11 C 0.025 3.975 12 C -0.522 4.522 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.143 4.143 21 C 0.063 3.937 22 O -0.376 6.376 23 H 0.050 0.950 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.337 0.663 33 H 0.014 0.986 34 H 0.057 0.943 35 H 0.025 0.975 36 H 0.013 0.987 37 H 0.261 0.739 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.531 6.254 5.917 20.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 C -0.201 4.201 4 C 0.041 3.959 5 H 0.071 0.929 6 C -0.191 4.191 7 C -0.025 4.025 8 H 0.054 0.946 9 N -0.317 5.317 10 C -0.062 4.062 11 C -0.012 4.012 12 C -0.561 4.561 13 H 0.072 0.928 14 C -0.144 4.144 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.181 4.181 21 C -0.014 4.014 22 O -0.295 6.295 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.155 0.845 33 H 0.032 0.968 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.032 0.968 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.110 0.890 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.364 6.920 5.464 20.372 hybrid contribution 0.519 -1.905 -0.117 1.978 sum -17.846 5.016 5.347 19.293 Atomic orbital electron populations 1.21793 0.94879 1.01501 1.02001 1.21148 0.96219 0.97292 0.95915 1.21786 1.01208 0.95375 1.01772 1.22069 0.93426 0.94410 0.86041 0.92854 1.22472 0.95999 1.02793 0.97795 1.21496 0.89735 0.96858 0.94380 0.94555 1.60610 1.05682 1.49321 1.16083 1.22196 0.99312 0.88877 0.95783 1.19066 0.87614 0.97483 0.97056 1.21173 0.91666 1.14510 1.28733 0.92808 1.25007 0.97063 0.96431 0.95872 1.69976 1.02334 1.38398 1.42528 0.86586 0.78289 0.82416 0.80645 1.20609 1.21203 1.19934 1.22198 0.94976 1.02032 0.98904 1.22579 0.94386 0.97845 0.86612 1.87874 1.78548 1.49600 1.13448 0.93087 0.91875 0.92895 0.90325 0.91715 0.93219 0.92392 0.89802 0.91347 0.84544 0.96793 0.92422 0.95653 0.96848 0.92980 0.90412 0.90965 0.88972 0.93714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.09 37.16 0.34 -0.93 16 2 C -0.09 -0.84 2.75 -90.62 -0.25 -1.09 16 3 C -0.14 -1.41 8.75 37.16 0.33 -1.08 16 4 C 0.10 1.12 2.32 -26.69 -0.06 1.05 16 5 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 6 C -0.15 -1.90 4.49 -26.59 -0.12 -2.02 16 7 C 0.09 1.27 2.58 -67.53 -0.17 1.09 16 8 H 0.04 0.56 7.80 -51.93 -0.41 0.15 16 9 N -0.69 -12.39 6.31 -106.53 -0.67 -13.06 16 10 C 0.07 1.42 5.43 -3.83 -0.02 1.40 16 11 C 0.03 0.67 5.23 -27.89 -0.15 0.52 16 12 C -0.52 -14.98 9.11 -34.45 -0.31 -15.29 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -27.13 13.29 55.43 0.74 -26.40 16 16 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 C -0.14 -1.98 5.63 -26.60 -0.15 -2.13 16 21 C 0.06 0.73 6.84 37.20 0.25 0.99 16 22 O -0.38 -4.64 9.06 -35.23 -0.32 -4.96 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.60 7.82 -51.93 -0.41 0.20 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.69 7.56 -51.93 -0.39 0.30 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.59 6.52 -51.93 -0.34 0.25 16 30 H 0.08 1.10 6.47 -51.93 -0.34 0.76 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.34 5.87 8.36 -39.29 -0.33 5.54 16 33 H 0.01 0.30 8.06 -51.93 -0.42 -0.12 16 34 H 0.06 1.24 7.54 -51.93 -0.39 0.85 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.07 1.05 7.57 -51.93 -0.39 0.66 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 320.53 15.07 4.83 4.83 Total: -1.00 -30.11 320.53 -8.46 -38.57 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -7.60 Total: 0.15 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -0.41 Total: -15.91 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.06 Total: -39.46 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.32 Total: -4.96 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.11 -8.46 -38.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308860308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.505 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds