Wall clock time and date at job start Sun Mar 29 2020 22:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46667 * 2 1 4 4 C 1.52998 * 109.46986 * 119.99645 * 2 1 3 5 5 H 1.09000 * 109.48200 * 59.98125 * 4 2 1 6 6 C 1.53093 * 109.47800 * 180.02562 * 4 2 1 7 7 C 1.53179 * 109.16004 * 177.59624 * 6 4 2 8 8 H 1.08998 * 109.54692 * 62.97491 * 7 6 4 9 9 N 1.46901 * 109.54089 * 183.15366 * 7 6 4 10 10 C 1.46896 * 110.99831 * 204.99654 * 9 7 6 11 11 C 1.52998 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.47348 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99758 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00102 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 C 1.53185 * 109.03302 * 303.01757 * 7 6 4 21 21 C 1.53087 * 109.16269 * 56.98671 * 20 7 6 22 22 O 1.42901 * 109.48317 * 299.94883 * 4 2 1 23 23 H 1.09001 * 109.47533 * 60.00090 * 1 2 3 24 24 H 1.09003 * 109.47185 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47509 * 300.00367 * 1 2 3 26 26 H 1.08998 * 109.47310 * 240.00149 * 2 1 3 27 27 H 1.09003 * 109.46958 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47410 * 299.99768 * 3 2 1 29 29 H 1.08998 * 109.47134 * 60.00041 * 3 2 1 30 30 H 1.09001 * 109.52016 * 57.69080 * 6 4 2 31 31 H 1.08997 * 109.52200 * 297.49916 * 6 4 2 32 32 H 1.00899 * 111.00212 * 81.04349 * 9 7 6 33 33 H 1.09000 * 109.47274 * 60.00200 * 10 9 7 34 34 H 1.09002 * 109.47154 * 299.99707 * 10 9 7 35 35 H 1.09001 * 109.47671 * 60.00253 * 11 10 9 36 36 H 1.09006 * 109.47297 * 299.99972 * 11 10 9 37 37 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 38 38 H 1.09002 * 109.51633 * 176.88878 * 20 7 6 39 39 H 1.09004 * 109.52180 * 297.07281 * 20 7 6 40 40 H 1.09000 * 109.47901 * 182.40800 * 21 20 7 41 41 H 1.08996 * 109.48538 * 62.37322 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6765 -1.7488 1.2497 6 6 3.5709 -0.7207 1.2498 7 6 4.0734 -1.3910 2.5322 8 1 3.7525 -2.4325 2.5492 9 7 5.5404 -1.3279 2.5773 10 6 6.0885 -2.4092 3.4067 11 6 7.6152 -2.3103 3.4300 12 6 8.1776 -3.4201 4.2804 13 1 7.5127 -4.1252 4.7571 14 6 9.5410 -3.5353 4.4500 15 7 10.3507 -2.6764 3.8700 16 14 10.2381 -4.9104 5.5047 17 1 11.7199 -4.8153 5.5262 18 1 9.7136 -4.7874 6.8886 19 1 9.8350 -6.2223 4.9374 20 6 3.4914 -0.6537 3.7423 21 6 1.9636 -0.6568 3.6455 22 8 1.5647 -0.0470 2.4162 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6765 1.9563 0.8900 30 1 3.9348 0.3059 1.2086 31 1 3.9356 -1.2725 0.3834 32 1 5.8537 -0.4265 2.9050 33 1 5.7928 -3.3722 2.9904 34 1 5.7035 -2.3189 4.4225 35 1 7.9107 -1.3474 3.8466 36 1 8.0006 -2.4004 2.4143 37 1 9.9887 -1.9622 3.3226 38 1 3.7994 -1.1577 4.6584 39 1 3.8539 0.3743 3.7514 40 1 1.5453 -0.0965 4.4817 41 1 1.5994 -1.6836 3.6772 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308860310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:42 Heat of formation + Delta-G solvation = -82.238465 kcal Electronic energy + Delta-G solvation = -17818.513414 eV Core-core repulsion = 15117.840461 eV Total energy + Delta-G solvation = -2700.672953 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.86806 -36.47861 -35.18341 -33.62656 -31.51749 -30.12454 -28.22691 -27.24164 -24.58591 -23.58193 -23.04065 -21.02728 -20.38726 -19.79416 -16.79456 -16.44423 -15.89586 -15.22239 -14.97652 -14.53082 -14.31289 -13.86012 -13.71520 -13.61153 -13.12725 -12.96685 -12.53534 -12.13112 -11.97872 -11.81230 -11.59784 -11.40003 -11.23056 -10.95330 -10.90615 -10.72049 -10.68719 -10.24757 -10.16904 -10.10616 -9.78582 -9.47812 -8.57238 -8.32592 -7.89875 -6.35994 -4.04986 3.43592 3.45862 3.64632 3.70576 4.35685 4.56285 4.71561 4.80218 4.81534 4.92336 5.04048 5.11210 5.23893 5.36020 5.40918 5.42195 5.55295 5.57163 5.64512 5.69326 5.78609 5.83743 5.87529 5.89391 6.02494 6.12175 6.17372 6.20667 6.28128 6.31279 6.38915 6.80817 7.19735 7.25911 7.49216 7.67001 7.84171 8.24067 8.46357 8.88929 9.67651 11.05177 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.051317 B = 0.003945 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.497280 B = 7095.513743 C = 7330.409110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.146 4.146 4 C 0.095 3.905 5 H 0.054 0.946 6 C -0.138 4.138 7 C 0.086 3.914 8 H 0.072 0.928 9 N -0.686 5.686 10 C 0.073 3.927 11 C 0.012 3.988 12 C -0.604 4.604 13 H 0.047 0.953 14 C 0.015 3.985 15 N -0.912 5.912 16 Si 1.069 2.931 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.288 1.288 20 C -0.186 4.186 21 C 0.068 3.932 22 O -0.376 6.376 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.336 0.664 33 H 0.058 0.942 34 H 0.017 0.983 35 H 0.004 0.996 36 H 0.016 0.984 37 H 0.270 0.730 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.222 5.755 -5.143 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 C -0.203 4.203 4 C 0.037 3.963 5 H 0.072 0.928 6 C -0.176 4.176 7 C -0.025 4.025 8 H 0.090 0.910 9 N -0.315 5.315 10 C -0.055 4.055 11 C -0.025 4.025 12 C -0.643 4.643 13 H 0.065 0.935 14 C -0.189 4.189 15 N -0.548 5.548 16 Si 0.898 3.102 17 H -0.207 1.207 18 H -0.215 1.215 19 H -0.214 1.214 20 C -0.225 4.225 21 C -0.010 4.010 22 O -0.295 6.295 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.154 0.846 33 H 0.077 0.923 34 H 0.035 0.965 35 H 0.022 0.978 36 H 0.034 0.966 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.811 4.909 -5.181 19.188 hybrid contribution -1.460 0.660 0.470 1.670 sum -19.271 5.569 -4.710 20.605 Atomic orbital electron populations 1.21773 0.94870 1.01520 1.01937 1.21136 0.96245 0.97148 0.95967 1.21824 1.01260 0.95485 1.01727 1.22150 0.93225 0.95196 0.85740 0.92759 1.22274 0.94484 1.02254 0.98581 1.21591 0.89042 0.98758 0.93101 0.90960 1.60685 1.05949 1.07547 1.57363 1.22027 0.98026 0.92674 0.92763 1.19200 0.89450 0.96810 0.97084 1.21993 0.94370 1.14527 1.33363 0.93456 1.25848 0.93756 1.01161 0.98115 1.70771 1.37966 1.15688 1.30391 0.83540 0.76223 0.74910 0.75562 1.20720 1.21501 1.21429 1.22959 0.97005 1.02064 1.00480 1.22459 0.93889 0.97813 0.86812 1.87874 1.74624 1.53730 1.13319 0.92958 0.93078 0.91869 0.90196 0.92299 0.93150 0.91927 0.90698 0.90516 0.84620 0.92302 0.96490 0.97768 0.96563 0.92000 0.90974 0.91030 0.89200 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.05 37.16 0.34 -0.94 16 2 C -0.09 -0.84 2.81 -90.62 -0.25 -1.10 16 3 C -0.15 -1.42 8.70 37.16 0.32 -1.10 16 4 C 0.10 1.07 2.38 -26.68 -0.06 1.01 16 5 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 6 C -0.14 -1.75 4.74 -26.59 -0.13 -1.88 16 7 C 0.09 1.25 2.55 -67.52 -0.17 1.08 16 8 H 0.07 1.09 7.80 -51.93 -0.41 0.69 16 9 N -0.69 -12.26 6.26 -106.53 -0.67 -12.93 16 10 C 0.07 1.57 5.43 -3.83 -0.02 1.55 16 11 C 0.01 0.31 4.54 -27.88 -0.13 0.19 16 12 C -0.60 -17.55 9.11 -34.44 -0.31 -17.87 16 13 H 0.05 1.35 7.74 -52.48 -0.41 0.94 16 14 C 0.02 0.44 5.46 -17.82 -0.10 0.35 16 15 N -0.91 -28.45 13.65 55.43 0.76 -27.69 16 16 Si 1.07 25.58 29.90 -169.99 -5.08 20.50 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 C -0.19 -2.41 5.39 -26.59 -0.14 -2.55 16 21 C 0.07 0.77 6.84 37.20 0.25 1.02 16 22 O -0.38 -4.57 9.06 -35.23 -0.32 -4.89 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.61 7.68 -51.93 -0.40 0.21 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.60 6.38 -51.93 -0.33 0.27 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.66 7.68 -51.93 -0.40 0.27 16 30 H 0.07 0.98 6.31 -51.93 -0.33 0.65 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.34 5.87 8.44 -39.29 -0.33 5.54 16 33 H 0.06 1.28 8.06 -51.93 -0.42 0.86 16 34 H 0.02 0.36 7.54 -51.93 -0.39 -0.03 16 35 H 0.00 0.11 8.01 -51.93 -0.42 -0.30 16 36 H 0.02 0.45 8.01 -51.93 -0.42 0.04 16 37 H 0.27 8.40 7.22 -40.82 -0.29 8.10 16 38 H 0.07 0.98 7.58 -51.93 -0.39 0.59 16 39 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 318.86 15.07 4.81 4.81 Total: -1.00 -30.71 318.86 -8.44 -39.15 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.53 Total: 1.30 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -0.40 Total: -20.25 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.09 Total: -40.62 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.32 Total: -4.89 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -5.08 Total: 20.50 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.71 -8.44 -39.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308860310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.085 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds