Wall clock time and date at job start Sun Mar 29 2020 22:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46667 * 2 1 4 4 C 1.52998 * 109.46986 * 119.99645 * 2 1 3 5 5 H 1.09000 * 109.48200 * 59.98125 * 4 2 1 6 6 C 1.53093 * 109.47800 * 180.02562 * 4 2 1 7 7 C 1.53179 * 109.16004 * 177.59624 * 6 4 2 8 8 H 1.08998 * 109.54692 * 62.97491 * 7 6 4 9 9 N 1.46901 * 109.54089 * 183.15366 * 7 6 4 10 10 C 1.46896 * 110.99831 * 204.99654 * 9 7 6 11 11 C 1.52998 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.47348 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99758 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00102 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 C 1.53185 * 109.03302 * 303.01757 * 7 6 4 21 21 C 1.53087 * 109.16269 * 56.98671 * 20 7 6 22 22 O 1.42901 * 109.48317 * 299.94883 * 4 2 1 23 23 H 1.09001 * 109.47533 * 60.00090 * 1 2 3 24 24 H 1.09003 * 109.47185 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47509 * 300.00367 * 1 2 3 26 26 H 1.08998 * 109.47310 * 240.00149 * 2 1 3 27 27 H 1.09003 * 109.46958 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47410 * 299.99768 * 3 2 1 29 29 H 1.08998 * 109.47134 * 60.00041 * 3 2 1 30 30 H 1.09001 * 109.52016 * 57.69080 * 6 4 2 31 31 H 1.08997 * 109.52200 * 297.49916 * 6 4 2 32 32 H 1.00899 * 111.00212 * 81.04349 * 9 7 6 33 33 H 1.09000 * 109.47274 * 60.00200 * 10 9 7 34 34 H 1.09002 * 109.47154 * 299.99707 * 10 9 7 35 35 H 1.09001 * 109.47671 * 60.00253 * 11 10 9 36 36 H 1.09006 * 109.47297 * 299.99972 * 11 10 9 37 37 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 38 38 H 1.09002 * 109.51633 * 176.88878 * 20 7 6 39 39 H 1.09004 * 109.52180 * 297.07281 * 20 7 6 40 40 H 1.09000 * 109.47901 * 182.40800 * 21 20 7 41 41 H 1.08996 * 109.48538 * 62.37322 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6765 -1.7488 1.2497 6 6 3.5709 -0.7207 1.2498 7 6 4.0734 -1.3910 2.5322 8 1 3.7525 -2.4325 2.5492 9 7 5.5404 -1.3279 2.5773 10 6 6.0885 -2.4092 3.4067 11 6 7.6152 -2.3103 3.4300 12 6 8.1776 -3.4201 4.2804 13 1 7.5127 -4.1252 4.7571 14 6 9.5410 -3.5353 4.4500 15 7 10.3507 -2.6764 3.8700 16 14 10.2381 -4.9104 5.5047 17 1 11.7199 -4.8153 5.5262 18 1 9.7136 -4.7874 6.8886 19 1 9.8350 -6.2223 4.9374 20 6 3.4914 -0.6537 3.7423 21 6 1.9636 -0.6568 3.6455 22 8 1.5647 -0.0470 2.4162 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6765 1.9563 0.8900 30 1 3.9348 0.3059 1.2086 31 1 3.9356 -1.2725 0.3834 32 1 5.8537 -0.4265 2.9050 33 1 5.7928 -3.3722 2.9904 34 1 5.7035 -2.3189 4.4225 35 1 7.9107 -1.3474 3.8466 36 1 8.0006 -2.4004 2.4143 37 1 9.9887 -1.9622 3.3226 38 1 3.7994 -1.1577 4.6584 39 1 3.8539 0.3743 3.7514 40 1 1.5453 -0.0965 4.4817 41 1 1.5994 -1.6836 3.6772 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308860310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:41 Heat of formation + Delta-G solvation = -101.664384 kcal Electronic energy + Delta-G solvation = -17819.355785 eV Core-core repulsion = 15117.840461 eV Total energy + Delta-G solvation = -2701.515324 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.86686 -37.86454 -36.11206 -35.57424 -33.13239 -31.05777 -29.97459 -27.99899 -26.21781 -24.77446 -24.38921 -22.86994 -21.49939 -20.70160 -18.93014 -17.46466 -16.91385 -16.59919 -16.04240 -15.79156 -15.66876 -15.32019 -15.03570 -14.92184 -14.59384 -14.14112 -13.80977 -13.46524 -13.31048 -12.89421 -12.82219 -12.68268 -12.51518 -12.37168 -12.11739 -12.01082 -11.82407 -11.75092 -11.58424 -11.53592 -11.12161 -10.79387 -10.57422 -10.45209 -9.36664 -8.72416 -6.43175 1.51601 1.60462 1.79949 2.54970 2.81730 3.12554 3.13677 3.69700 3.76934 3.89326 4.04123 4.11597 4.14392 4.25719 4.32285 4.38733 4.41518 4.50629 4.68320 4.71893 4.73517 4.83405 4.86937 4.88961 4.96442 5.04461 5.07219 5.12565 5.18539 5.22956 5.26668 5.39274 5.48040 5.53897 5.88144 6.11143 6.15791 6.28697 6.36549 6.55649 7.39847 8.68838 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.051317 B = 0.003945 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.497280 B = 7095.513743 C = 7330.409110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 C -0.143 4.143 4 C 0.097 3.903 5 H 0.059 0.941 6 C -0.131 4.131 7 C 0.084 3.916 8 H 0.069 0.931 9 N -0.691 5.691 10 C 0.093 3.907 11 C 0.015 3.985 12 C -0.622 4.622 13 H 0.052 0.948 14 C -0.039 4.039 15 N -0.936 5.936 16 Si 1.120 2.880 17 H -0.283 1.283 18 H -0.267 1.267 19 H -0.268 1.268 20 C -0.180 4.180 21 C 0.069 3.931 22 O -0.383 6.383 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.089 0.911 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.338 0.662 33 H 0.055 0.945 34 H 0.020 0.980 35 H -0.012 1.012 36 H -0.010 1.010 37 H 0.255 0.745 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.107 0.893 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.764 5.139 -4.867 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 C -0.200 4.200 4 C 0.039 3.961 5 H 0.077 0.923 6 C -0.169 4.169 7 C -0.026 4.026 8 H 0.087 0.913 9 N -0.320 5.320 10 C -0.036 4.036 11 C -0.022 4.022 12 C -0.661 4.661 13 H 0.070 0.930 14 C -0.236 4.236 15 N -0.573 5.573 16 Si 0.941 3.059 17 H -0.208 1.208 18 H -0.192 1.192 19 H -0.193 1.193 20 C -0.219 4.219 21 C -0.008 4.008 22 O -0.302 6.302 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.108 0.892 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.156 0.844 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.006 0.994 36 H 0.009 0.991 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.125 0.875 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.395 4.310 -4.918 20.467 hybrid contribution -1.007 0.900 0.341 1.393 sum -20.401 5.210 -4.577 21.548 Atomic orbital electron populations 1.21733 0.93963 1.01907 1.02089 1.21181 0.96979 0.96920 0.95450 1.21794 1.00702 0.95653 1.01894 1.22196 0.91856 0.95772 0.86286 0.92266 1.22209 0.95786 1.01599 0.97283 1.21687 0.86763 0.99178 0.94975 0.91288 1.60608 1.08387 1.06627 1.56406 1.21637 0.94674 0.93781 0.93540 1.19100 0.92897 0.95287 0.94915 1.22436 0.94948 1.15163 1.33504 0.92993 1.27516 0.94708 1.02795 0.98625 1.70913 1.38369 1.16411 1.31646 0.82909 0.75501 0.72604 0.74933 1.20813 1.19249 1.19303 1.22873 0.98461 1.01380 0.99180 1.22526 0.92364 0.98734 0.87165 1.87884 1.74518 1.54110 1.13677 0.91713 0.92582 0.92810 0.89246 0.93106 0.91802 0.92937 0.91110 0.90861 0.84438 0.92612 0.96208 0.99420 0.99119 0.93548 0.91622 0.91353 0.87452 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.05 71.98 0.65 -1.52 16 2 C -0.09 -1.53 2.81 -10.79 -0.03 -1.56 16 3 C -0.14 -2.59 8.70 71.98 0.63 -1.96 16 4 C 0.10 2.03 2.38 30.62 0.07 2.10 16 5 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 6 C -0.13 -3.20 4.74 30.69 0.15 -3.05 16 7 C 0.08 2.37 2.55 45.04 0.12 2.49 16 8 H 0.07 2.01 7.80 -2.39 -0.02 1.99 16 9 N -0.69 -24.69 6.26 -490.95 -3.07 -27.77 16 10 C 0.09 3.97 5.43 86.30 0.47 4.44 16 11 C 0.02 0.83 4.54 29.85 0.14 0.97 16 12 C -0.62 -36.39 9.11 25.60 0.23 -36.15 16 13 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 14 C -0.04 -2.31 5.46 84.65 0.46 -1.85 16 15 N -0.94 -59.37 13.65 21.45 0.29 -59.08 16 16 Si 1.12 50.67 29.90 68.60 2.05 52.72 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 19 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 20 C -0.18 -4.46 5.39 30.69 0.17 -4.29 16 21 C 0.07 1.43 6.84 72.01 0.49 1.92 16 22 O -0.38 -8.58 9.06 -148.98 -1.35 -9.93 16 23 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.05 0.94 7.68 -2.39 -0.02 0.92 16 26 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.05 0.99 6.38 -2.39 -0.02 0.97 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 1.05 7.68 -2.39 -0.02 1.03 16 30 H 0.07 1.80 6.31 -2.39 -0.02 1.78 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.34 11.89 8.44 -89.69 -0.76 11.14 16 33 H 0.06 2.41 8.06 -2.39 -0.02 2.39 16 34 H 0.02 0.83 7.54 -2.39 -0.02 0.81 16 35 H -0.01 -0.71 8.01 -2.39 -0.02 -0.73 16 36 H -0.01 -0.56 8.01 -2.38 -0.02 -0.58 16 37 H 0.26 16.45 7.22 -92.71 -0.67 15.78 16 38 H 0.07 1.72 7.58 -2.39 -0.02 1.70 16 39 H 0.07 1.74 8.09 -2.38 -0.02 1.72 16 40 H 0.11 1.85 8.14 -2.39 -0.02 1.84 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -65.56 318.86 1.78 -63.78 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.32 Total: 18.74 kcal Atomic # 6 Polarization: -42.00 SS G_CDS: 3.54 Total: -38.46 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -2.78 Total: -86.84 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -1.35 Total: -9.93 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.05 Total: 52.72 kcal Total: -65.56 1.78 -63.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308860310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.884 kcal (2) G-P(sol) polarization free energy of solvation -65.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds