Wall clock time and date at job start Sun Mar 29 2020 22:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47271 * 2 1 4 4 C 1.53005 * 109.47162 * 120.00010 * 2 1 3 5 5 H 1.08997 * 109.48673 * 299.96853 * 4 2 1 6 6 C 1.53097 * 109.47971 * 179.97438 * 4 2 1 7 7 C 1.53180 * 109.21119 * 182.44174 * 6 4 2 8 8 H 1.09005 * 109.59319 * 176.78366 * 7 6 4 9 9 N 1.46907 * 109.49617 * 297.04874 * 7 6 4 10 10 C 1.46901 * 111.00007 * 204.52348 * 9 7 6 11 11 C 1.53001 * 109.46889 * 180.02562 * 10 9 7 12 12 C 1.50705 * 109.46790 * 180.02562 * 11 10 9 13 13 H 1.07990 * 120.00092 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99402 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00208 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99561 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47111 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47264 * 119.99951 * 16 14 12 19 19 H 1.48502 * 109.47006 * 239.99706 * 16 14 12 20 20 C 1.53177 * 109.03525 * 56.88485 * 7 6 4 21 21 C 1.53098 * 109.21356 * 303.11207 * 20 7 6 22 22 O 1.42898 * 109.48269 * 60.00059 * 4 2 1 23 23 H 1.09008 * 109.47184 * 299.99892 * 1 2 3 24 24 H 1.08998 * 109.47439 * 60.00015 * 1 2 3 25 25 H 1.09001 * 109.47072 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47321 * 239.99819 * 2 1 3 27 27 H 1.08998 * 109.47192 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46894 * 300.00304 * 3 2 1 29 29 H 1.08995 * 109.47095 * 59.99681 * 3 2 1 30 30 H 1.09002 * 109.52138 * 302.31194 * 6 4 2 31 31 H 1.09003 * 109.52113 * 62.50105 * 6 4 2 32 32 H 1.00897 * 110.99514 * 328.47666 * 9 7 6 33 33 H 1.08997 * 109.46866 * 299.99724 * 10 9 7 34 34 H 1.09005 * 109.46805 * 59.99990 * 10 9 7 35 35 H 1.09003 * 109.46680 * 299.99757 * 11 10 9 36 36 H 1.08995 * 109.47544 * 59.99707 * 11 10 9 37 37 H 0.96999 * 119.99796 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.52487 * 183.17418 * 20 7 6 39 39 H 1.09004 * 109.52023 * 63.05037 * 20 7 6 40 40 H 1.08999 * 109.47354 * 177.55660 * 21 20 7 41 41 H 1.08999 * 109.48099 * 297.59428 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6773 -0.2073 2.1394 6 6 3.5710 -0.7219 1.2491 7 6 4.0748 -1.4979 2.4700 8 1 5.1632 -1.5512 2.4455 9 7 3.6418 -0.8162 3.6971 10 6 4.5311 -1.1397 4.8208 11 6 4.0488 -0.4135 6.0782 12 6 4.9615 -0.7449 7.2308 13 1 5.8011 -1.4075 7.0815 14 6 4.7237 -0.2029 8.4761 15 7 3.7010 0.6035 8.6580 16 14 5.8545 -0.6142 9.9049 17 1 6.9218 -1.5371 9.4418 18 1 6.4695 0.6335 10.4245 19 1 5.0708 -1.2666 10.9845 20 6 3.4915 -2.9139 2.4374 21 6 1.9636 -2.8286 2.3917 22 8 1.5638 -2.0686 1.2495 23 1 -0.3634 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.9349 -1.1996 0.3395 31 1 3.9356 0.3043 1.2938 32 1 3.5857 0.1813 3.5560 33 1 4.5188 -2.2155 4.9957 34 1 5.5464 -0.8216 4.5838 35 1 4.0607 0.6623 5.9034 36 1 3.0336 -0.7319 6.3149 37 1 3.5340 0.9850 9.5340 38 1 3.7995 -3.4554 3.3319 39 1 3.8538 -3.4369 1.5523 40 1 1.5454 -3.8329 2.3247 41 1 1.5994 -2.3425 3.2968 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308860312.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:44 Heat of formation + Delta-G solvation = -77.464069 kcal Electronic energy + Delta-G solvation = -18068.771289 eV Core-core repulsion = 15368.305369 eV Total energy + Delta-G solvation = -2700.465920 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.68856 -36.12737 -35.14818 -33.30681 -31.47484 -30.01004 -28.30943 -27.10852 -24.60028 -23.60342 -23.47761 -20.56035 -20.14050 -19.25667 -16.36151 -16.30023 -15.93698 -15.38081 -14.52956 -14.43402 -14.33122 -14.16014 -13.46707 -13.27925 -12.87207 -12.66028 -12.46007 -12.23843 -12.02079 -11.69802 -11.40879 -11.17414 -11.08331 -11.05156 -10.94755 -10.74939 -10.53025 -10.29864 -10.11246 -9.92187 -9.37372 -9.17875 -9.13598 -8.36791 -7.82119 -6.01175 -4.03726 3.30081 3.37568 3.41499 3.92924 4.41900 4.62786 4.74641 4.88300 5.07756 5.10373 5.18054 5.32630 5.35021 5.37428 5.50916 5.60534 5.66313 5.74813 5.82511 5.83557 5.89669 6.02695 6.06284 6.10004 6.15088 6.21217 6.26958 6.31689 6.36445 6.42938 6.47612 6.97366 7.47038 7.50536 7.71480 7.80812 7.94028 8.06839 8.42385 9.03801 9.60306 11.10283 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035077 B = 0.004631 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.059645 B = 6044.750241 C = 6323.680354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 C -0.149 4.149 4 C 0.103 3.897 5 H 0.069 0.931 6 C -0.150 4.150 7 C 0.081 3.919 8 H 0.041 0.959 9 N -0.686 5.686 10 C 0.067 3.933 11 C 0.026 3.974 12 C -0.521 4.521 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.141 4.141 21 C 0.070 3.930 22 O -0.385 6.385 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.336 0.664 33 H 0.057 0.943 34 H 0.014 0.986 35 H 0.013 0.987 36 H 0.025 0.975 37 H 0.260 0.740 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.082 0.918 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.251 -2.048 -17.192 17.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 C -0.206 4.206 4 C 0.045 3.955 5 H 0.087 0.913 6 C -0.188 4.188 7 C -0.029 4.029 8 H 0.059 0.941 9 N -0.318 5.318 10 C -0.062 4.062 11 C -0.012 4.012 12 C -0.560 4.560 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.179 4.179 21 C -0.006 4.006 22 O -0.304 6.304 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.154 0.846 33 H 0.076 0.924 34 H 0.033 0.967 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.908 -2.506 -17.042 17.663 hybrid contribution 1.708 0.399 0.929 1.984 sum -2.200 -2.107 -16.113 16.399 Atomic orbital electron populations 1.21754 0.94762 1.02298 1.01192 1.21109 0.96480 0.95570 0.97589 1.21878 1.01221 0.95390 1.02097 1.22003 0.92097 0.83505 0.97918 0.91319 1.22430 0.97341 1.00759 0.98289 1.21528 0.96937 0.94470 0.89971 0.94094 1.60651 1.53690 1.13463 1.03949 1.22193 0.92197 1.00405 0.91360 1.19064 0.97175 0.95056 0.89881 1.21213 1.12131 1.28435 0.94223 0.92763 1.24998 0.95381 0.95130 0.98817 1.69980 1.28415 1.31731 1.23114 0.86542 0.80814 0.78158 0.82519 1.19783 1.21024 1.20958 1.22122 0.97306 0.96639 1.01841 1.22431 0.93680 0.95267 0.89249 1.87798 1.74789 1.23362 1.44447 0.92748 0.93205 0.91914 0.91029 0.92348 0.92471 0.92215 0.91215 0.90982 0.84624 0.92409 0.96738 0.96891 0.95701 0.93043 0.90886 0.91969 0.90029 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.05 37.16 0.34 -1.17 16 2 C -0.09 -0.96 2.72 -90.62 -0.25 -1.21 16 3 C -0.15 -1.41 8.84 37.16 0.33 -1.08 16 4 C 0.10 1.33 2.06 -26.68 -0.06 1.27 16 5 H 0.07 1.00 7.75 -51.93 -0.40 0.59 16 6 C -0.15 -1.87 4.38 -26.59 -0.12 -1.99 16 7 C 0.08 1.19 2.85 -67.52 -0.19 1.00 16 8 H 0.04 0.62 7.81 -51.93 -0.41 0.21 16 9 N -0.69 -11.89 5.10 -106.52 -0.54 -12.43 16 10 C 0.07 1.39 5.43 -3.82 -0.02 1.37 16 11 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 12 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 16 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C -0.14 -1.96 5.74 -26.59 -0.15 -2.12 16 21 C 0.07 0.99 6.68 37.21 0.25 1.24 16 22 O -0.38 -5.51 9.73 -35.23 -0.34 -5.85 16 23 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.71 7.68 -51.93 -0.40 0.31 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.53 6.49 -51.93 -0.34 0.20 16 28 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.84 6.50 -51.93 -0.34 0.50 16 32 H 0.34 5.69 8.32 -39.29 -0.33 5.36 16 33 H 0.06 1.21 7.40 -51.93 -0.38 0.83 16 34 H 0.01 0.30 8.06 -51.93 -0.42 -0.12 16 35 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.07 1.07 7.40 -51.93 -0.38 0.69 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 1.07 7.75 -51.93 -0.40 0.67 16 LS Contribution 319.17 15.07 4.81 4.81 Total: -1.00 -29.64 319.17 -8.36 -37.99 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.57 Total: 0.73 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -0.43 Total: -15.71 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.19 Total: -38.63 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.34 Total: -5.85 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.64 -8.36 -37.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308860312.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.471 kcal (2) G-P(sol) polarization free energy of solvation -29.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds