Wall clock time and date at job start Sun Mar 29 2020 22:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47271 * 2 1 4 4 C 1.53005 * 109.47162 * 120.00010 * 2 1 3 5 5 H 1.08997 * 109.48673 * 299.96853 * 4 2 1 6 6 C 1.53097 * 109.47971 * 179.97438 * 4 2 1 7 7 C 1.53180 * 109.21119 * 182.44174 * 6 4 2 8 8 H 1.09005 * 109.59319 * 176.78366 * 7 6 4 9 9 N 1.46907 * 109.49617 * 297.04874 * 7 6 4 10 10 C 1.46901 * 111.00007 * 204.52348 * 9 7 6 11 11 C 1.53001 * 109.46889 * 180.02562 * 10 9 7 12 12 C 1.50705 * 109.46790 * 180.02562 * 11 10 9 13 13 H 1.07990 * 120.00092 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99402 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00208 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99561 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47111 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47264 * 119.99951 * 16 14 12 19 19 H 1.48502 * 109.47006 * 239.99706 * 16 14 12 20 20 C 1.53177 * 109.03525 * 56.88485 * 7 6 4 21 21 C 1.53098 * 109.21356 * 303.11207 * 20 7 6 22 22 O 1.42898 * 109.48269 * 60.00059 * 4 2 1 23 23 H 1.09008 * 109.47184 * 299.99892 * 1 2 3 24 24 H 1.08998 * 109.47439 * 60.00015 * 1 2 3 25 25 H 1.09001 * 109.47072 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47321 * 239.99819 * 2 1 3 27 27 H 1.08998 * 109.47192 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46894 * 300.00304 * 3 2 1 29 29 H 1.08995 * 109.47095 * 59.99681 * 3 2 1 30 30 H 1.09002 * 109.52138 * 302.31194 * 6 4 2 31 31 H 1.09003 * 109.52113 * 62.50105 * 6 4 2 32 32 H 1.00897 * 110.99514 * 328.47666 * 9 7 6 33 33 H 1.08997 * 109.46866 * 299.99724 * 10 9 7 34 34 H 1.09005 * 109.46805 * 59.99990 * 10 9 7 35 35 H 1.09003 * 109.46680 * 299.99757 * 11 10 9 36 36 H 1.08995 * 109.47544 * 59.99707 * 11 10 9 37 37 H 0.96999 * 119.99796 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.52487 * 183.17418 * 20 7 6 39 39 H 1.09004 * 109.52023 * 63.05037 * 20 7 6 40 40 H 1.08999 * 109.47354 * 177.55660 * 21 20 7 41 41 H 1.08999 * 109.48099 * 297.59428 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6773 -0.2073 2.1394 6 6 3.5710 -0.7219 1.2491 7 6 4.0748 -1.4979 2.4700 8 1 5.1632 -1.5512 2.4455 9 7 3.6418 -0.8162 3.6971 10 6 4.5311 -1.1397 4.8208 11 6 4.0488 -0.4135 6.0782 12 6 4.9615 -0.7449 7.2308 13 1 5.8011 -1.4075 7.0815 14 6 4.7237 -0.2029 8.4761 15 7 3.7010 0.6035 8.6580 16 14 5.8545 -0.6142 9.9049 17 1 6.9218 -1.5371 9.4418 18 1 6.4695 0.6335 10.4245 19 1 5.0708 -1.2666 10.9845 20 6 3.4915 -2.9139 2.4374 21 6 1.9636 -2.8286 2.3917 22 8 1.5638 -2.0686 1.2495 23 1 -0.3634 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.9349 -1.1996 0.3395 31 1 3.9356 0.3043 1.2938 32 1 3.5857 0.1813 3.5560 33 1 4.5188 -2.2155 4.9957 34 1 5.5464 -0.8216 4.5838 35 1 4.0607 0.6623 5.9034 36 1 3.0336 -0.7319 6.3149 37 1 3.5340 0.9850 9.5340 38 1 3.7995 -3.4554 3.3319 39 1 3.8538 -3.4369 1.5523 40 1 1.5454 -3.8329 2.3247 41 1 1.5994 -2.3425 3.2968 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308860312.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:43 Heat of formation + Delta-G solvation = -95.588308 kcal Electronic energy + Delta-G solvation = -18069.557215 eV Core-core repulsion = 15368.305369 eV Total energy + Delta-G solvation = -2701.251846 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.80071 -37.49242 -36.15749 -35.25622 -33.14630 -31.07121 -30.04511 -27.95313 -26.25778 -24.99030 -24.62073 -22.41882 -21.08013 -20.46017 -18.47645 -17.40302 -17.04366 -16.81830 -16.40769 -15.77286 -15.61043 -15.15535 -14.72688 -14.50350 -14.34632 -13.96829 -13.78693 -13.35258 -13.17437 -13.10413 -12.88950 -12.85376 -12.41908 -12.32301 -12.14350 -12.06811 -11.87591 -11.68516 -11.42987 -11.34070 -11.25026 -10.93562 -10.59083 -10.32987 -9.25387 -8.21685 -6.33140 1.39439 1.39927 1.53122 2.39430 2.89861 3.12047 3.29814 3.68637 3.89174 3.99715 4.10394 4.22872 4.27728 4.43579 4.46198 4.51330 4.58693 4.64339 4.74015 4.84164 4.84927 4.90279 4.97629 5.00253 5.05342 5.08961 5.13356 5.16860 5.23284 5.30249 5.44374 5.48370 5.51143 5.66297 5.78221 6.13272 6.27060 6.41559 6.52591 6.84460 7.36444 8.90662 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035077 B = 0.004631 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.059645 B = 6044.750241 C = 6323.680354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.146 4.146 4 C 0.100 3.900 5 H 0.047 0.953 6 C -0.142 4.142 7 C 0.078 3.922 8 H 0.043 0.957 9 N -0.687 5.687 10 C 0.087 3.913 11 C 0.033 3.967 12 C -0.544 4.544 13 H 0.059 0.941 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.966 3.034 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.278 1.278 20 C -0.138 4.138 21 C 0.072 3.928 22 O -0.391 6.391 23 H 0.045 0.955 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.338 0.662 33 H 0.056 0.944 34 H 0.017 0.983 35 H -0.010 1.010 36 H -0.007 1.007 37 H 0.264 0.736 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.188 -2.492 -18.289 18.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.104 4.104 3 C -0.203 4.203 4 C 0.042 3.958 5 H 0.065 0.935 6 C -0.180 4.180 7 C -0.032 4.032 8 H 0.061 0.939 9 N -0.319 5.319 10 C -0.042 4.042 11 C -0.004 4.004 12 C -0.582 4.582 13 H 0.077 0.923 14 C -0.196 4.196 15 N -0.572 5.572 16 Si 0.791 3.209 17 H -0.186 1.186 18 H -0.203 1.203 19 H -0.204 1.204 20 C -0.177 4.177 21 C -0.005 4.005 22 O -0.310 6.310 23 H 0.065 0.935 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.156 0.844 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.009 0.991 36 H 0.012 0.988 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.843 -2.955 -18.161 18.618 hybrid contribution 1.319 0.550 1.235 1.889 sum -1.524 -2.405 -16.926 17.164 Atomic orbital electron populations 1.21739 0.94692 1.01729 1.01706 1.21117 0.96561 0.96162 0.96550 1.21869 1.01530 0.94420 1.02519 1.22092 0.92526 0.82923 0.98239 0.93508 1.22385 0.96797 1.01182 0.97634 1.21645 0.97176 0.94958 0.89380 0.93877 1.60557 1.52973 1.13897 1.04510 1.21784 0.92497 0.99393 0.90514 1.18905 0.95333 0.94092 0.92088 1.21637 1.12636 1.28625 0.95341 0.92262 1.25958 0.96949 0.94779 1.01936 1.70111 1.30224 1.32757 1.24081 0.85384 0.78766 0.78246 0.78550 1.18596 1.20277 1.20365 1.22116 0.97060 0.96199 1.02280 1.22408 0.93929 0.95886 0.88283 1.87799 1.75099 1.23932 1.44182 0.93545 0.91392 0.93011 0.90307 0.91839 0.90875 0.92999 0.89613 0.89970 0.84416 0.92535 0.96505 0.99116 0.98849 0.92740 0.91874 0.89980 0.88277 0.94045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.05 71.98 0.65 -2.16 16 2 C -0.09 -1.71 2.72 -10.79 -0.03 -1.74 16 3 C -0.15 -2.49 8.84 71.98 0.64 -1.85 16 4 C 0.10 2.49 2.06 30.63 0.06 2.55 16 5 H 0.05 1.37 7.75 -2.39 -0.02 1.35 16 6 C -0.14 -3.28 4.38 30.69 0.13 -3.15 16 7 C 0.08 2.19 2.85 45.03 0.13 2.32 16 8 H 0.04 1.22 7.81 -2.38 -0.02 1.20 16 9 N -0.69 -23.97 5.10 -490.92 -2.50 -26.47 16 10 C 0.09 3.66 5.43 86.30 0.47 4.12 16 11 C 0.03 1.78 5.23 29.85 0.16 1.94 16 12 C -0.54 -31.24 9.11 25.60 0.23 -31.00 16 13 H 0.06 3.27 7.74 -2.92 -0.02 3.24 16 14 C 0.00 0.10 5.46 84.66 0.46 0.56 16 15 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 16 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 17 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 18 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 20 C -0.14 -3.68 5.74 30.69 0.18 -3.51 16 21 C 0.07 1.98 6.68 72.01 0.48 2.46 16 22 O -0.39 -10.80 9.73 -148.98 -1.45 -12.25 16 23 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.05 1.13 7.68 -2.39 -0.02 1.11 16 26 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.06 1.01 6.49 -2.39 -0.02 1.00 16 28 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.08 1.75 6.50 -2.39 -0.02 1.73 16 32 H 0.34 11.56 8.32 -89.70 -0.75 10.81 16 33 H 0.06 2.38 7.40 -2.39 -0.02 2.36 16 34 H 0.02 0.70 8.06 -2.38 -0.02 0.68 16 35 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 36 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 37 H 0.26 15.13 8.31 -92.71 -0.77 14.35 16 38 H 0.06 1.81 7.40 -2.39 -0.02 1.79 16 39 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 40 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.04 1.35 7.75 -2.39 -0.02 1.33 16 Total: -1.00 -63.58 319.17 2.15 -61.43 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.23 Total: 17.18 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 3.56 Total: -29.45 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -2.22 Total: -83.33 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -1.45 Total: -12.25 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -63.58 2.15 -61.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308860312.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.155 kcal (2) G-P(sol) polarization free energy of solvation -63.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds