Wall clock time and date at job start Sun Mar 29 2020 22:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47020 * 2 1 4 4 C 1.52990 * 109.47410 * 120.00631 * 2 1 3 5 5 H 1.09003 * 109.48662 * 60.02072 * 4 2 1 6 6 C 1.53092 * 109.49271 * 180.02562 * 4 2 1 7 7 C 1.53176 * 109.16571 * 177.59679 * 6 4 2 8 8 H 1.09000 * 109.62123 * 183.10910 * 7 6 4 9 9 N 1.46903 * 109.54571 * 62.88173 * 7 6 4 10 10 C 1.46896 * 111.00106 * 155.44194 * 9 7 6 11 11 C 1.52996 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47159 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 C 1.53175 * 109.03549 * 303.01787 * 7 6 4 21 21 C 1.53092 * 109.16622 * 56.97938 * 20 7 6 22 22 O 1.42901 * 109.41567 * 302.39352 * 21 20 7 23 23 H 1.09001 * 109.47289 * 59.99631 * 1 2 3 24 24 H 1.09001 * 109.47245 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46991 * 299.99536 * 1 2 3 26 26 H 1.09004 * 109.46499 * 240.00379 * 2 1 3 27 27 H 1.09004 * 109.47034 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47843 * 300.00149 * 3 2 1 29 29 H 1.09004 * 109.47175 * 60.00793 * 3 2 1 30 30 H 1.09001 * 109.52480 * 57.68614 * 6 4 2 31 31 H 1.09007 * 109.51874 * 297.49902 * 6 4 2 32 32 H 1.00897 * 111.00198 * 279.39896 * 9 7 6 33 33 H 1.09004 * 109.46774 * 60.00282 * 10 9 7 34 34 H 1.09000 * 109.47723 * 300.00671 * 10 9 7 35 35 H 1.09004 * 109.47066 * 60.00378 * 11 10 9 36 36 H 1.08994 * 109.47405 * 300.00209 * 11 10 9 37 37 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 38 38 H 1.09002 * 109.52273 * 176.88623 * 20 7 6 39 39 H 1.09002 * 109.52416 * 297.00791 * 20 7 6 40 40 H 1.09003 * 109.47742 * 62.37300 * 21 20 7 41 41 H 1.09000 * 109.48326 * 182.40831 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6771 -1.7492 1.2490 6 6 3.5709 -0.7210 1.2498 7 6 4.0733 -1.3915 2.5321 8 1 5.1618 -1.3462 2.5666 9 7 3.6389 -2.7946 2.5558 10 6 4.5276 -3.6068 3.3974 11 6 4.0446 -5.0585 3.3967 12 6 4.9560 -5.8916 4.2607 13 1 5.7956 -5.4316 4.7606 14 6 4.7144 -7.2400 4.4179 15 7 3.6919 -7.8001 3.8094 16 14 5.8397 -8.2710 5.4949 17 1 5.8215 -7.7394 6.8814 18 1 5.3680 -9.6792 5.4981 19 1 7.2243 -8.2145 4.9612 20 6 3.4913 -0.6545 3.7422 21 6 1.9635 -0.6573 3.6453 22 8 1.5643 -0.0475 2.4161 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8932 -0.5138 -0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 3.9351 0.3056 1.2088 31 1 3.9357 -1.2728 0.3833 32 1 2.6807 -2.8714 2.8624 33 1 4.5163 -3.2202 4.4165 34 1 5.5428 -3.5618 3.0031 35 1 4.0563 -5.4448 2.3775 36 1 3.0294 -5.1039 3.7908 37 1 3.5222 -8.7488 3.9197 38 1 3.7991 -1.1586 4.6584 39 1 3.8547 0.3731 3.7523 40 1 1.5992 -1.6842 3.6768 41 1 1.5451 -0.0972 4.4816 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308860314.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:46 Heat of formation + Delta-G solvation = -75.134657 kcal Electronic energy + Delta-G solvation = -18093.851992 eV Core-core repulsion = 15393.487083 eV Total energy + Delta-G solvation = -2700.364909 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.92073 -36.25880 -34.95043 -33.31527 -31.46326 -30.00579 -28.26599 -27.12172 -24.83494 -23.81861 -23.49627 -20.67613 -20.22225 -19.01380 -16.38460 -16.29531 -15.89801 -15.29784 -14.70574 -14.54060 -14.44697 -14.23867 -13.65473 -13.32172 -12.95409 -12.61370 -12.35239 -12.11716 -11.85673 -11.77109 -11.57844 -11.28867 -11.12399 -10.96353 -10.88344 -10.70207 -10.61705 -10.53864 -10.09904 -9.96199 -9.34691 -9.20644 -9.15467 -8.36154 -7.82483 -6.00506 -4.03299 3.32649 3.37126 3.39367 3.85835 4.42262 4.68150 4.72609 4.89014 4.96482 5.05662 5.10235 5.18425 5.31193 5.35359 5.47748 5.53960 5.64946 5.70475 5.76378 5.86208 5.91868 5.96844 5.98382 6.01471 6.12763 6.19738 6.21100 6.31755 6.38812 6.43144 6.46962 6.96388 7.35651 7.47133 7.70857 7.81012 7.93305 8.06912 8.42387 9.03660 9.60487 11.10872 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.042593 B = 0.004432 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.223788 B = 6316.207376 C = 6515.615222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.144 4.144 4 C 0.095 3.905 5 H 0.066 0.934 6 C -0.136 4.136 7 C 0.082 3.918 8 H 0.077 0.923 9 N -0.686 5.686 10 C 0.065 3.935 11 C 0.026 3.974 12 C -0.523 4.523 13 H 0.053 0.947 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.186 4.186 21 C 0.063 3.937 22 O -0.378 6.378 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.333 0.667 33 H 0.015 0.985 34 H 0.058 0.942 35 H 0.025 0.975 36 H 0.012 0.988 37 H 0.261 0.739 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.983 17.097 -5.101 18.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.201 4.201 4 C 0.037 3.963 5 H 0.084 0.916 6 C -0.174 4.174 7 C -0.029 4.029 8 H 0.095 0.905 9 N -0.318 5.318 10 C -0.063 4.063 11 C -0.012 4.012 12 C -0.562 4.562 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.225 4.225 21 C -0.015 4.015 22 O -0.297 6.297 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.153 0.847 33 H 0.033 0.967 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.030 0.970 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.859 16.913 -5.725 18.268 hybrid contribution 0.584 -0.667 1.631 1.857 sum -3.276 16.246 -4.093 17.071 Atomic orbital electron populations 1.21769 0.94894 1.01770 1.01703 1.21144 0.96339 0.96767 0.96303 1.21816 1.00875 0.95828 1.01620 1.22113 0.93156 0.95787 0.85235 0.91617 1.22248 0.96074 1.00384 0.98731 1.21602 0.99521 0.88696 0.93037 0.90494 1.60781 1.06676 1.06676 1.57622 1.22187 0.95759 0.95867 0.92448 1.19060 0.96182 0.88254 0.97690 1.21136 1.12280 0.93514 1.29227 0.92846 1.25000 0.95378 0.97985 0.95939 1.69965 1.28382 1.11750 1.43131 0.86648 0.81059 0.79257 0.80960 1.20302 1.21244 1.20218 1.22825 0.97243 1.01935 1.00541 1.22488 0.93930 0.98111 0.86920 1.87852 1.74728 1.53795 1.13363 0.93141 0.92810 0.91954 0.90230 0.92635 0.93294 0.91990 0.91236 0.90398 0.84705 0.96671 0.92367 0.95676 0.96957 0.92925 0.90919 0.91133 0.93085 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.05 37.16 0.34 -1.15 16 2 C -0.09 -0.94 2.81 -90.63 -0.25 -1.20 16 3 C -0.14 -1.42 8.70 37.16 0.32 -1.10 16 4 C 0.09 1.20 2.13 -26.69 -0.06 1.14 16 5 H 0.07 0.93 7.36 -51.93 -0.38 0.55 16 6 C -0.14 -1.74 4.82 -26.59 -0.13 -1.87 16 7 C 0.08 1.19 2.89 -67.53 -0.19 1.00 16 8 H 0.08 1.14 7.81 -51.93 -0.41 0.74 16 9 N -0.69 -12.13 5.87 -106.53 -0.63 -12.75 16 10 C 0.07 1.37 5.43 -3.83 -0.02 1.35 16 11 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 12 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 16 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 C -0.19 -2.43 5.72 -26.59 -0.15 -2.58 16 21 C 0.06 0.80 6.58 37.21 0.24 1.04 16 22 O -0.38 -5.01 9.06 -35.23 -0.32 -5.33 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.69 7.68 -51.93 -0.40 0.29 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.53 6.38 -51.93 -0.33 0.20 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.66 7.68 -51.93 -0.40 0.27 16 30 H 0.07 0.81 6.32 -51.93 -0.33 0.48 16 31 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 32 H 0.33 5.84 5.81 -39.29 -0.23 5.62 16 33 H 0.02 0.31 7.40 -51.93 -0.38 -0.07 16 34 H 0.06 1.23 8.06 -51.93 -0.42 0.81 16 35 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.07 1.00 7.40 -51.93 -0.38 0.61 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.69 6.43 -51.93 -0.33 0.36 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 314.67 15.07 4.74 4.74 Total: -1.00 -29.58 314.67 -8.29 -37.87 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.34 Total: 1.49 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -0.46 Total: -16.45 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.11 Total: -39.02 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.32 Total: -5.33 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.58 -8.29 -37.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308860314.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.265 kcal (2) G-P(sol) polarization free energy of solvation -29.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds