Wall clock time and date at job start Sun Mar 29 2020 22:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47020 * 2 1 4 4 C 1.52990 * 109.47410 * 120.00631 * 2 1 3 5 5 H 1.09003 * 109.48662 * 60.02072 * 4 2 1 6 6 C 1.53092 * 109.49271 * 180.02562 * 4 2 1 7 7 C 1.53176 * 109.16571 * 177.59679 * 6 4 2 8 8 H 1.09000 * 109.62123 * 183.10910 * 7 6 4 9 9 N 1.46903 * 109.54571 * 62.88173 * 7 6 4 10 10 C 1.46896 * 111.00106 * 155.44194 * 9 7 6 11 11 C 1.52996 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47159 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 C 1.53175 * 109.03549 * 303.01787 * 7 6 4 21 21 C 1.53092 * 109.16622 * 56.97938 * 20 7 6 22 22 O 1.42901 * 109.41567 * 302.39352 * 21 20 7 23 23 H 1.09001 * 109.47289 * 59.99631 * 1 2 3 24 24 H 1.09001 * 109.47245 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46991 * 299.99536 * 1 2 3 26 26 H 1.09004 * 109.46499 * 240.00379 * 2 1 3 27 27 H 1.09004 * 109.47034 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47843 * 300.00149 * 3 2 1 29 29 H 1.09004 * 109.47175 * 60.00793 * 3 2 1 30 30 H 1.09001 * 109.52480 * 57.68614 * 6 4 2 31 31 H 1.09007 * 109.51874 * 297.49902 * 6 4 2 32 32 H 1.00897 * 111.00198 * 279.39896 * 9 7 6 33 33 H 1.09004 * 109.46774 * 60.00282 * 10 9 7 34 34 H 1.09000 * 109.47723 * 300.00671 * 10 9 7 35 35 H 1.09004 * 109.47066 * 60.00378 * 11 10 9 36 36 H 1.08994 * 109.47405 * 300.00209 * 11 10 9 37 37 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 38 38 H 1.09002 * 109.52273 * 176.88623 * 20 7 6 39 39 H 1.09002 * 109.52416 * 297.00791 * 20 7 6 40 40 H 1.09003 * 109.47742 * 62.37300 * 21 20 7 41 41 H 1.09000 * 109.48326 * 182.40831 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6771 -1.7492 1.2490 6 6 3.5709 -0.7210 1.2498 7 6 4.0733 -1.3915 2.5321 8 1 5.1618 -1.3462 2.5666 9 7 3.6389 -2.7946 2.5558 10 6 4.5276 -3.6068 3.3974 11 6 4.0446 -5.0585 3.3967 12 6 4.9560 -5.8916 4.2607 13 1 5.7956 -5.4316 4.7606 14 6 4.7144 -7.2400 4.4179 15 7 3.6919 -7.8001 3.8094 16 14 5.8397 -8.2710 5.4949 17 1 5.8215 -7.7394 6.8814 18 1 5.3680 -9.6792 5.4981 19 1 7.2243 -8.2145 4.9612 20 6 3.4913 -0.6545 3.7422 21 6 1.9635 -0.6573 3.6453 22 8 1.5643 -0.0475 2.4161 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8932 -0.5138 -0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 3.9351 0.3056 1.2088 31 1 3.9357 -1.2728 0.3833 32 1 2.6807 -2.8714 2.8624 33 1 4.5163 -3.2202 4.4165 34 1 5.5428 -3.5618 3.0031 35 1 4.0563 -5.4448 2.3775 36 1 3.0294 -5.1039 3.7908 37 1 3.5222 -8.7488 3.9197 38 1 3.7991 -1.1586 4.6584 39 1 3.8547 0.3731 3.7523 40 1 1.5992 -1.6842 3.6768 41 1 1.5451 -0.0972 4.4816 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308860314.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:45 Heat of formation + Delta-G solvation = -93.295604 kcal Electronic energy + Delta-G solvation = -18094.639510 eV Core-core repulsion = 15393.487083 eV Total energy + Delta-G solvation = -2701.152427 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.00438 -37.57586 -35.98484 -35.23919 -33.14328 -31.00099 -30.03085 -27.95005 -26.28628 -25.42642 -24.54066 -22.52418 -21.24013 -20.14617 -18.47077 -17.44661 -16.99818 -16.57735 -16.42980 -15.88602 -15.69917 -15.36977 -14.77168 -14.64949 -14.33774 -14.09352 -13.65518 -13.24495 -13.11476 -12.98772 -12.89125 -12.72925 -12.62311 -12.44012 -12.27849 -12.11577 -11.75338 -11.60430 -11.49255 -11.44019 -11.29232 -10.93870 -10.57318 -10.26206 -9.28314 -8.21367 -6.33254 1.39648 1.42865 1.50879 2.39648 2.86370 3.12037 3.30895 3.73640 3.85595 3.95375 4.00340 4.16136 4.19135 4.31149 4.43893 4.49673 4.54809 4.64238 4.76191 4.77828 4.87089 4.91633 4.94828 5.01885 5.04890 5.07320 5.11863 5.14291 5.23677 5.30409 5.43314 5.50582 5.58074 5.65343 5.77190 6.12138 6.26539 6.33091 6.48563 6.83717 7.36209 8.90607 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.042593 B = 0.004432 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.223788 B = 6316.207376 C = 6515.615222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C -0.139 4.139 4 C 0.094 3.906 5 H 0.044 0.956 6 C -0.129 4.129 7 C 0.078 3.922 8 H 0.077 0.923 9 N -0.690 5.690 10 C 0.085 3.915 11 C 0.032 3.968 12 C -0.546 4.546 13 H 0.061 0.939 14 C 0.001 3.999 15 N -0.932 5.932 16 Si 0.967 3.033 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.267 1.267 20 C -0.178 4.178 21 C 0.061 3.939 22 O -0.380 6.380 23 H 0.066 0.934 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.086 0.914 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.333 0.667 33 H 0.020 0.980 34 H 0.057 0.943 35 H -0.007 1.007 36 H -0.012 1.012 37 H 0.264 0.736 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.036 0.964 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.139 18.374 -4.791 19.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 C -0.196 4.196 4 C 0.037 3.963 5 H 0.062 0.938 6 C -0.167 4.167 7 C -0.032 4.032 8 H 0.095 0.905 9 N -0.322 5.322 10 C -0.044 4.044 11 C -0.005 4.005 12 C -0.585 4.585 13 H 0.079 0.921 14 C -0.197 4.197 15 N -0.572 5.572 16 Si 0.791 3.209 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.191 1.191 20 C -0.218 4.218 21 C -0.016 4.016 22 O -0.300 6.300 23 H 0.085 0.915 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.104 0.896 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.153 0.847 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.011 0.989 36 H 0.007 0.993 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.055 0.945 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.012 18.217 -5.418 19.243 hybrid contribution 0.275 -1.043 1.494 1.843 sum -2.738 17.174 -3.924 17.828 Atomic orbital electron populations 1.21745 0.94620 1.01443 1.02087 1.21181 0.96612 0.97394 0.95403 1.21771 1.01056 0.94883 1.01931 1.22130 0.93118 0.95060 0.86032 0.93783 1.22200 0.96041 1.01018 0.97454 1.21721 0.99678 0.86910 0.94870 0.90515 1.60699 1.06168 1.08649 1.56715 1.21789 0.95950 0.93285 0.93349 1.18911 0.94878 0.91509 0.95217 1.21581 1.12835 0.94377 1.29662 0.92124 1.25979 0.96943 0.99436 0.97302 1.70106 1.30229 1.12230 1.44587 0.85474 0.78975 0.77248 0.79178 1.19102 1.20788 1.19142 1.22745 0.97268 1.02515 0.99246 1.22555 0.93865 0.97725 0.87483 1.87860 1.74863 1.53704 1.13538 0.91500 0.93524 0.92787 0.89591 0.92258 0.91835 0.92826 0.89408 0.90809 0.84718 0.96200 0.92404 0.98853 0.99335 0.92726 0.91619 0.89364 0.94536 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.05 71.98 0.65 -2.11 16 2 C -0.09 -1.76 2.81 -10.80 -0.03 -1.79 16 3 C -0.14 -2.43 8.70 71.98 0.63 -1.81 16 4 C 0.09 2.31 2.13 30.62 0.07 2.38 16 5 H 0.04 1.27 7.36 -2.39 -0.02 1.25 16 6 C -0.13 -3.12 4.82 30.68 0.15 -2.97 16 7 C 0.08 2.19 2.89 45.03 0.13 2.32 16 8 H 0.08 2.17 7.81 -2.39 -0.02 2.15 16 9 N -0.69 -24.60 5.87 -490.97 -2.88 -27.48 16 10 C 0.09 3.60 5.43 86.30 0.47 4.07 16 11 C 0.03 1.75 5.23 29.85 0.16 1.90 16 12 C -0.55 -31.44 9.11 25.60 0.23 -31.20 16 13 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 14 C 0.00 0.09 5.46 84.66 0.46 0.55 16 15 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 16 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 C -0.18 -4.38 5.72 30.68 0.18 -4.21 16 21 C 0.06 1.48 6.58 72.01 0.47 1.96 16 22 O -0.38 -9.62 9.06 -148.98 -1.35 -10.97 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 25 H 0.05 1.14 7.68 -2.39 -0.02 1.12 16 26 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.06 0.98 6.38 -2.38 -0.02 0.97 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 1.03 7.68 -2.38 -0.02 1.02 16 30 H 0.09 1.83 6.32 -2.39 -0.02 1.82 16 31 H 0.07 1.85 8.14 -2.38 -0.02 1.84 16 32 H 0.33 11.97 5.81 -89.70 -0.52 11.45 16 33 H 0.02 0.82 7.40 -2.38 -0.02 0.80 16 34 H 0.06 2.44 8.06 -2.39 -0.02 2.42 16 35 H -0.01 -0.42 8.14 -2.38 -0.02 -0.43 16 36 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 37 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 38 H 0.07 1.72 7.40 -2.39 -0.02 1.70 16 39 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.04 1.00 6.43 -2.39 -0.02 0.98 16 41 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -63.32 314.67 2.10 -61.22 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.46 Total: 18.79 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: 3.56 Total: -30.92 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -2.60 Total: -84.53 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -1.35 Total: -10.97 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -63.32 2.10 -61.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308860314.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.075 kcal (2) G-P(sol) polarization free energy of solvation -63.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds