Wall clock time and date at job start Sun Mar 29 2020 23:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47108 * 2 1 4 4 H 1.08999 * 109.46867 * 304.79620 * 3 2 1 5 5 C 1.50698 * 109.47074 * 184.79923 * 3 2 1 6 6 H 1.07996 * 120.00360 * 244.90436 * 5 3 2 7 7 C 1.37879 * 120.00236 * 64.89883 * 5 3 2 8 8 N 1.31511 * 120.00239 * 193.15291 * 7 5 3 9 9 Si 1.86810 * 119.99799 * 13.15363 * 7 5 3 10 10 H 1.48499 * 109.46692 * 93.24608 * 9 7 5 11 11 H 1.48491 * 109.47151 * 213.24621 * 9 7 5 12 12 H 1.48499 * 109.47042 * 333.24811 * 9 7 5 13 13 N 1.46895 * 109.47369 * 64.79643 * 3 2 1 14 14 C 1.46900 * 111.00427 * 259.52155 * 13 3 2 15 15 C 1.52992 * 109.47270 * 173.95729 * 14 13 3 16 16 C 1.53000 * 112.90890 * 42.97939 * 15 14 13 17 17 O 1.42898 * 109.47504 * 305.30376 * 16 15 14 18 18 C 1.42895 * 114.00541 * 180.02562 * 17 16 15 19 19 C 1.53779 * 113.61497 * 174.23131 * 15 14 13 20 20 C 1.53778 * 87.17272 * 89.15680 * 19 15 14 21 21 C 1.53777 * 87.07994 * 25.39292 * 20 19 15 22 22 H 1.09006 * 109.46831 * 300.83471 * 1 2 3 23 23 H 1.09001 * 109.47249 * 60.82830 * 1 2 3 24 24 H 1.08992 * 109.47322 * 180.83127 * 1 2 3 25 25 H 1.09003 * 109.47002 * 239.99875 * 2 1 3 26 26 H 1.08998 * 109.46755 * 119.99806 * 2 1 3 27 27 H 0.97004 * 120.00071 * 180.02562 * 8 7 5 28 28 H 1.00899 * 110.99994 * 135.56747 * 13 3 2 29 29 H 1.09001 * 109.46652 * 53.95676 * 14 13 3 30 30 H 1.08999 * 109.46996 * 293.95995 * 14 13 3 31 31 H 1.09004 * 109.46968 * 65.30417 * 16 15 14 32 32 H 1.09002 * 109.47379 * 185.29829 * 16 15 14 33 33 H 1.09004 * 109.46953 * 300.00187 * 18 17 16 34 34 H 1.09004 * 109.47319 * 59.99345 * 18 17 16 35 35 H 1.08995 * 109.47556 * 180.02562 * 18 17 16 36 36 H 1.09009 * 113.61573 * 334.56820 * 19 15 14 37 37 H 1.09001 * 113.61786 * 203.74902 * 19 15 14 38 38 H 1.09008 * 113.61203 * 139.94052 * 20 19 15 39 39 H 1.08996 * 113.61972 * 270.76028 * 20 19 15 40 40 H 1.09010 * 113.61684 * 89.11322 * 21 20 19 41 41 H 1.08996 * 113.61475 * 219.92693 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6082 1.9805 -0.8439 5 6 3.5423 1.4442 -0.1189 6 1 4.1479 1.8177 0.6936 7 6 4.1437 0.9688 -1.2649 8 7 5.4363 0.7266 -1.2772 9 14 3.1225 0.6687 -2.8001 10 1 3.1588 1.8769 -3.6626 11 1 3.6784 -0.4888 -3.5459 12 1 1.7186 0.3795 -2.4120 13 7 1.6472 2.1008 1.2531 14 6 0.4678 2.9534 1.0528 15 6 -0.0008 3.5010 2.4023 16 6 1.1546 3.9742 3.2866 17 8 2.1004 2.9144 3.4423 18 6 3.2249 3.2536 4.2561 19 6 -1.1472 4.5197 2.2892 20 6 -2.1140 3.3272 2.3794 21 6 -0.9980 2.5802 3.1287 22 1 -0.3633 0.5268 0.8825 23 1 -0.3634 0.5009 -0.8973 24 1 -0.3633 -1.0275 0.0149 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 5.8595 0.3924 -2.0836 28 1 2.4145 2.6300 1.6394 29 1 -0.3321 2.3666 0.6011 30 1 0.7265 3.7825 0.3942 31 1 1.6419 4.8305 2.8204 32 1 0.7690 4.2636 4.2642 33 1 3.7553 4.0952 3.8104 34 1 2.8819 3.5278 5.2538 35 1 3.8955 2.3971 4.3246 36 1 -1.1793 5.0362 1.3298 37 1 -1.2123 5.1998 3.1385 38 1 -2.9945 3.5243 2.9911 39 1 -2.3601 2.8903 1.4117 40 1 -1.0213 2.7294 4.2083 41 1 -0.9107 1.5306 2.8484 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308959566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:32 Heat of formation + Delta-G solvation = -18.343536 kcal Electronic energy + Delta-G solvation = -18886.680815 eV Core-core repulsion = 16188.778554 eV Total energy + Delta-G solvation = -2697.902261 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.67134 -36.83278 -35.92055 -32.22196 -31.18357 -28.83918 -27.39422 -25.94232 -25.28859 -24.07154 -22.32878 -21.69779 -19.49686 -18.19218 -16.73042 -15.99572 -15.86589 -15.54971 -14.73499 -14.64284 -13.87437 -13.71334 -13.38037 -12.75243 -12.67329 -12.46792 -12.24572 -12.04495 -11.86799 -11.44084 -11.36911 -11.23510 -10.84984 -10.79568 -10.63433 -10.42290 -10.07895 -9.98874 -9.73348 -9.63246 -9.23082 -9.09254 -8.88769 -8.36953 -7.03756 -6.03966 -3.98490 3.32484 3.42050 3.46956 4.02585 4.48345 4.72392 4.77127 4.98836 5.10271 5.28284 5.42687 5.48052 5.58739 5.67973 5.73354 5.76542 5.82732 5.84189 5.95685 6.03902 6.10121 6.14629 6.18658 6.24783 6.29915 6.41159 6.46677 6.55545 6.67465 6.82796 6.93434 7.20257 7.22194 7.59069 7.62903 7.82934 8.21326 8.68924 8.88891 9.10598 9.63453 11.09222 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024127 B = 0.008194 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.267215 B = 3416.128118 C = 4094.180304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 C 0.188 3.812 4 H -0.003 1.003 5 C -0.523 4.523 6 H 0.074 0.926 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.863 3.137 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.248 1.248 13 N -0.663 5.663 14 C 0.082 3.918 15 C -0.073 4.073 16 C 0.077 3.923 17 O -0.346 6.346 18 C 0.026 3.974 19 C -0.131 4.131 20 C -0.142 4.142 21 C -0.118 4.118 22 H 0.059 0.941 23 H 0.033 0.967 24 H 0.032 0.968 25 H 0.046 0.954 26 H 0.058 0.942 27 H 0.262 0.738 28 H 0.351 0.649 29 H 0.068 0.932 30 H 0.014 0.986 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.036 0.964 34 H 0.030 0.970 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.057 6.422 8.403 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 C 0.079 3.921 4 H 0.014 0.986 5 C -0.561 4.561 6 H 0.092 0.908 7 C -0.128 4.128 8 N -0.534 5.534 9 Si 0.690 3.310 10 H -0.211 1.211 11 H -0.215 1.215 12 H -0.172 1.172 13 N -0.302 5.302 14 C -0.048 4.048 15 C -0.073 4.073 16 C -0.001 4.001 17 O -0.263 6.263 18 C -0.071 4.071 19 C -0.169 4.169 20 C -0.180 4.180 21 C -0.156 4.156 22 H 0.078 0.922 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.177 0.823 29 H 0.087 0.913 30 H 0.032 0.968 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.255 5.647 8.451 15.921 hybrid contribution 0.156 0.876 -1.296 1.572 sum -12.099 6.522 7.154 15.495 Atomic orbital electron populations 1.21903 0.98903 0.99325 1.00506 1.21848 0.92541 0.99658 1.00483 1.19435 0.95005 0.90776 0.86863 0.98560 1.21282 0.89657 1.42338 1.02806 0.90762 1.24918 0.94699 0.94426 0.98743 1.69974 1.10408 1.44739 1.28308 0.87219 0.82474 0.77699 0.83594 1.21094 1.21489 1.17187 1.60606 1.08103 1.33712 1.27813 1.21763 0.96037 0.94909 0.92104 1.21963 0.92210 0.96510 0.96644 1.22416 0.90185 0.90155 0.97298 1.88226 1.32490 1.36511 1.69048 1.22747 0.89610 1.01450 0.93256 1.22972 0.95788 0.96351 1.01835 1.22822 0.96781 0.97405 1.00977 1.22871 0.94362 0.99898 0.98445 0.92197 0.94748 0.94925 0.93568 0.92366 0.92858 0.82274 0.91348 0.96779 0.94134 0.94184 0.94582 0.95167 0.89461 0.91443 0.90402 0.91969 0.90221 0.90916 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.88 37.16 0.33 -2.54 16 2 C -0.11 -2.46 4.86 -26.73 -0.13 -2.59 16 3 C 0.19 4.57 1.76 -68.87 -0.12 4.45 16 4 H 0.00 -0.08 6.36 -51.93 -0.33 -0.41 16 5 C -0.52 -14.86 9.02 -34.44 -0.31 -15.17 16 6 H 0.07 2.29 7.69 -52.49 -0.40 1.88 16 7 C 0.07 2.16 5.36 -17.82 -0.10 2.07 16 8 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 9 Si 0.86 21.71 25.76 -169.99 -4.38 17.33 16 10 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.25 -5.91 5.36 56.52 0.30 -5.61 16 13 N -0.66 -14.05 4.98 -107.96 -0.54 -14.59 16 14 C 0.08 1.46 4.43 -3.83 -0.02 1.44 16 15 C -0.07 -1.05 1.07 -153.61 -0.16 -1.21 16 16 C 0.08 1.10 5.10 37.16 0.19 1.29 16 17 O -0.35 -5.82 7.02 -35.23 -0.25 -6.07 16 18 C 0.03 0.37 11.01 101.05 1.11 1.48 16 19 C -0.13 -1.53 7.22 -25.92 -0.19 -1.71 16 20 C -0.14 -1.62 7.74 -25.92 -0.20 -1.83 16 21 C -0.12 -1.58 7.17 -25.83 -0.19 -1.76 16 22 H 0.06 1.10 5.72 -51.93 -0.30 0.80 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 1.11 4.78 -51.93 -0.25 0.86 16 26 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 28 H 0.35 7.77 5.12 -39.29 -0.20 7.57 16 29 H 0.07 1.20 5.10 -51.93 -0.26 0.94 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.04 0.50 8.07 -51.93 -0.42 0.08 16 33 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.07 0.78 8.10 -51.92 -0.42 0.35 16 37 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 38 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 39 H 0.08 0.93 7.74 -51.93 -0.40 0.53 16 40 H 0.07 0.89 8.05 -51.92 -0.42 0.48 16 41 H 0.08 1.15 7.63 -51.93 -0.40 0.75 16 LS Contribution 308.96 15.07 4.66 4.66 Total: -1.00 -30.31 308.96 -6.77 -37.08 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.26 Total: 4.53 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: 0.22 Total: -16.08 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.24 Total: -41.45 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.25 Total: -6.07 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.38 Total: 17.33 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.31 -6.77 -37.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308959566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.741 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds