Wall clock time and date at job start Sun Mar 29 2020 23:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47058 * 2 1 4 4 H 1.08995 * 109.47026 * 184.92212 * 3 2 1 5 5 C 1.50701 * 109.46653 * 304.91676 * 3 2 1 6 6 H 1.08004 * 119.99661 * 120.00284 * 5 3 2 7 7 C 1.37878 * 120.00496 * 299.99869 * 5 3 2 8 8 N 1.31513 * 120.00359 * 180.02562 * 7 5 3 9 9 Si 1.86801 * 119.99638 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47132 * 90.00081 * 9 7 5 11 11 H 1.48501 * 109.46885 * 210.00014 * 9 7 5 12 12 H 1.48504 * 109.47212 * 329.99862 * 9 7 5 13 13 N 1.46890 * 109.47225 * 64.91432 * 3 2 1 14 14 C 1.46908 * 110.99902 * 84.25752 * 13 3 2 15 15 C 1.53001 * 109.47147 * 86.66298 * 14 13 3 16 16 C 1.53006 * 112.84892 * 56.07412 * 15 14 13 17 17 O 1.42895 * 109.47340 * 294.34918 * 16 15 14 18 18 C 1.42896 * 114.00004 * 179.97438 * 17 16 15 19 19 C 1.53781 * 113.61341 * 284.88618 * 15 14 13 20 20 C 1.53956 * 87.01686 * 220.04632 * 19 15 14 21 21 C 1.53781 * 113.61441 * 187.27328 * 15 14 13 22 22 H 1.09006 * 109.46937 * 172.95630 * 1 2 3 23 23 H 1.09001 * 109.47210 * 292.94949 * 1 2 3 24 24 H 1.08995 * 109.47206 * 52.95099 * 1 2 3 25 25 H 1.09001 * 109.47490 * 120.00185 * 2 1 3 26 26 H 1.08999 * 109.46980 * 240.00270 * 2 1 3 27 27 H 0.96998 * 119.99750 * 179.97438 * 8 7 5 28 28 H 1.00902 * 111.00288 * 320.30751 * 13 3 2 29 29 H 1.09000 * 109.47054 * 206.66302 * 14 13 3 30 30 H 1.08997 * 109.46615 * 326.66634 * 14 13 3 31 31 H 1.09008 * 109.46259 * 54.34497 * 16 15 14 32 32 H 1.08997 * 109.46765 * 174.33919 * 16 15 14 33 33 H 1.09002 * 109.47566 * 299.99863 * 18 17 16 34 34 H 1.09003 * 109.47387 * 59.99893 * 18 17 16 35 35 H 1.09000 * 109.47690 * 179.97438 * 18 17 16 36 36 H 1.09004 * 113.61078 * 334.55885 * 19 15 14 37 37 H 1.08995 * 113.62175 * 105.47159 * 19 15 14 38 38 H 1.09002 * 113.53901 * 270.81094 * 20 19 15 39 39 H 1.09005 * 113.74812 * 139.94090 * 20 19 15 40 40 H 1.08998 * 113.61362 * 254.53005 * 21 15 14 41 41 H 1.08994 * 113.61276 * 25.34875 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1263 1.4438 -0.0882 5 6 1.4406 2.1871 -1.1651 6 1 0.8307 3.0613 -0.9911 7 6 1.6708 1.7525 -2.4532 8 7 1.1482 2.4026 -3.4699 9 14 2.7252 0.2401 -2.7540 10 1 1.8639 -0.9696 -2.7647 11 1 3.4136 0.3692 -4.0635 12 1 3.7362 0.1185 -1.6731 13 7 1.6496 2.0999 1.2543 14 6 2.6135 1.8080 2.3238 15 6 3.7575 2.8227 2.2702 16 6 3.2715 4.2710 2.3564 17 8 2.5014 4.5849 1.1943 18 6 1.9967 5.9217 1.1753 19 6 4.7491 2.5730 1.1217 20 6 5.8669 2.9429 2.1136 21 6 4.9113 2.5016 3.2348 22 1 -0.3633 -1.0200 -0.1260 23 1 -0.3634 0.4007 0.9463 24 1 -0.3633 0.6191 -0.8202 25 1 1.8934 -0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.3105 2.0969 -4.3760 28 1 0.7154 1.8332 1.5268 29 1 2.1145 1.8738 3.2906 30 1 3.0128 0.8029 2.1885 31 1 2.6538 4.3945 3.2460 32 1 4.1304 4.9395 2.4147 33 1 1.3525 6.0793 2.0402 34 1 2.8290 6.6248 1.2092 35 1 1.4241 6.0809 0.2615 36 1 4.7835 1.5344 0.7926 37 1 4.6467 3.2767 0.2956 38 1 6.0984 4.0079 2.1312 39 1 6.7557 2.3179 2.0263 40 1 4.9396 3.1478 4.1122 41 1 4.9892 1.4438 3.4856 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308959568.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:34 Heat of formation + Delta-G solvation = -15.086877 kcal Electronic energy + Delta-G solvation = -19199.706028 eV Core-core repulsion = 16501.944986 eV Total energy + Delta-G solvation = -2697.761042 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.52640 -36.44781 -36.12129 -32.28000 -31.04007 -28.34486 -26.92352 -25.70243 -25.15187 -24.25726 -23.07470 -21.64234 -19.11621 -18.03913 -16.33128 -15.78492 -15.40988 -15.29322 -14.92684 -14.54597 -14.06835 -13.46301 -13.35731 -12.94132 -12.64957 -12.27560 -12.25399 -12.08125 -11.72179 -11.47195 -11.28434 -10.91475 -10.65756 -10.59504 -10.48239 -10.20018 -10.00443 -9.94445 -9.60923 -9.52039 -9.23091 -8.88723 -8.78456 -8.36170 -7.06243 -5.87243 -3.78577 3.35271 3.44675 3.46920 4.31452 4.55142 4.90429 4.92999 5.14831 5.34396 5.44011 5.50564 5.63638 5.69285 5.82107 5.85713 5.91347 5.95563 5.99896 6.03924 6.08184 6.12341 6.17654 6.23272 6.29533 6.31453 6.33987 6.65950 6.71071 6.73260 6.81977 6.90870 7.00698 7.22622 7.38381 7.95528 8.00727 8.18344 8.61328 8.93877 9.29430 9.78231 11.26995 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021446 B = 0.009406 C = 0.008778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.275377 B = 2976.247845 C = 3188.927213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.162 4.162 3 C 0.185 3.815 4 H 0.041 0.959 5 C -0.465 4.465 6 H 0.082 0.918 7 C 0.064 3.936 8 N -0.908 5.908 9 Si 0.876 3.124 10 H -0.283 1.283 11 H -0.300 1.300 12 H -0.271 1.271 13 N -0.649 5.649 14 C 0.074 3.926 15 C -0.068 4.068 16 C 0.100 3.900 17 O -0.324 6.324 18 C 0.033 3.967 19 C -0.118 4.118 20 C -0.147 4.147 21 C -0.130 4.130 22 H 0.027 0.973 23 H 0.039 0.961 24 H 0.082 0.918 25 H 0.028 0.972 26 H 0.045 0.955 27 H 0.259 0.741 28 H 0.325 0.675 29 H 0.049 0.951 30 H 0.026 0.974 31 H 0.035 0.965 32 H 0.030 0.970 33 H 0.026 0.974 34 H 0.022 0.978 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 0.988 12.889 13.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.201 4.201 3 C 0.075 3.925 4 H 0.059 0.941 5 C -0.504 4.504 6 H 0.100 0.900 7 C -0.135 4.135 8 N -0.548 5.548 9 Si 0.708 3.292 10 H -0.211 1.211 11 H -0.228 1.228 12 H -0.197 1.197 13 N -0.278 5.278 14 C -0.056 4.056 15 C -0.069 4.069 16 C 0.023 3.977 17 O -0.240 6.240 18 C -0.064 4.064 19 C -0.156 4.156 20 C -0.184 4.184 21 C -0.168 4.168 22 H 0.046 0.954 23 H 0.058 0.942 24 H 0.100 0.900 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.143 0.857 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.538 1.467 12.376 13.637 hybrid contribution 0.416 -1.708 0.104 1.761 sum 5.955 -0.241 12.479 13.829 Atomic orbital electron populations 1.21644 0.95993 0.99552 1.02235 1.22572 0.97132 1.01907 0.98490 1.19817 0.96431 0.87207 0.88999 0.94084 1.20896 1.29802 1.11913 0.87783 0.89992 1.24875 0.95838 0.96457 0.96368 1.69882 1.45960 1.40478 0.98520 0.87051 0.81296 0.84329 0.76569 1.21081 1.22824 1.19707 1.60405 1.03067 1.62137 1.02177 1.21756 0.94154 0.94887 0.94834 1.21781 0.93656 0.94781 0.96643 1.21890 0.93219 0.93618 0.88982 1.88443 1.69344 1.26909 1.39339 1.22638 0.97090 0.85143 1.01558 1.22880 0.93731 1.01882 0.97070 1.22934 0.97213 1.00760 0.97528 1.22932 0.96155 1.01115 0.96603 0.95424 0.94202 0.89962 0.95289 0.93647 0.93133 0.85693 0.93208 0.95598 0.94731 0.95168 0.95500 0.95908 0.89761 0.90595 0.90287 0.90673 0.92103 0.92002 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.39 37.16 0.35 -2.45 16 2 C -0.16 -3.53 5.20 -26.73 -0.14 -3.67 16 3 C 0.18 4.29 1.66 -68.87 -0.11 4.17 16 4 H 0.04 1.01 4.04 -51.93 -0.21 0.80 16 5 C -0.47 -12.87 7.81 -34.44 -0.27 -13.14 16 6 H 0.08 2.54 8.06 -52.48 -0.42 2.11 16 7 C 0.06 1.85 5.44 -17.82 -0.10 1.75 16 8 N -0.91 -28.01 13.96 55.43 0.77 -27.24 16 9 Si 0.88 22.43 24.32 -169.99 -4.13 18.29 16 10 H -0.28 -7.14 6.91 56.52 0.39 -6.75 16 11 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 12 H -0.27 -6.69 6.53 56.52 0.37 -6.32 16 13 N -0.65 -13.10 4.48 -107.95 -0.48 -13.59 16 14 C 0.07 1.26 5.27 -3.82 -0.02 1.24 16 15 C -0.07 -1.08 0.91 -153.69 -0.14 -1.22 16 16 C 0.10 1.60 5.14 37.16 0.19 1.79 16 17 O -0.32 -6.25 8.87 -35.23 -0.31 -6.56 16 18 C 0.03 0.53 11.01 101.05 1.11 1.64 16 19 C -0.12 -2.04 5.57 -25.83 -0.14 -2.18 16 20 C -0.15 -1.97 7.74 -25.82 -0.20 -2.17 16 21 C -0.13 -1.66 7.23 -25.92 -0.19 -1.85 16 22 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.04 0.72 6.72 -51.93 -0.35 0.37 16 24 H 0.08 1.93 6.81 -51.93 -0.35 1.57 16 25 H 0.03 0.57 7.34 -51.93 -0.38 0.19 16 26 H 0.05 1.07 3.41 -51.93 -0.18 0.89 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.32 6.35 6.78 -39.29 -0.27 6.08 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.03 0.45 7.00 -51.93 -0.36 0.09 16 31 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.03 0.44 7.32 -51.93 -0.38 0.06 16 33 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 36 H 0.08 1.39 6.99 -51.93 -0.36 1.03 16 37 H 0.08 1.56 7.98 -51.93 -0.41 1.15 16 38 H 0.07 0.95 7.61 -51.93 -0.40 0.56 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 306.10 15.07 4.61 4.61 Total: -1.00 -30.14 306.10 -6.26 -36.40 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -7.05 Total: 4.16 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 0.34 Total: -16.08 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.29 Total: -40.82 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.31 Total: -6.56 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.13 Total: 18.29 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.14 -6.26 -36.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308959568.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.313 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds