Wall clock time and date at job start Sun Mar 29 2020 23:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47058 * 2 1 4 4 H 1.08995 * 109.47026 * 184.92212 * 3 2 1 5 5 C 1.50701 * 109.46653 * 304.91676 * 3 2 1 6 6 H 1.08004 * 119.99661 * 120.00284 * 5 3 2 7 7 C 1.37878 * 120.00496 * 299.99869 * 5 3 2 8 8 N 1.31513 * 120.00359 * 180.02562 * 7 5 3 9 9 Si 1.86801 * 119.99638 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47132 * 90.00081 * 9 7 5 11 11 H 1.48501 * 109.46885 * 210.00014 * 9 7 5 12 12 H 1.48504 * 109.47212 * 329.99862 * 9 7 5 13 13 N 1.46890 * 109.47225 * 64.91432 * 3 2 1 14 14 C 1.46908 * 110.99902 * 84.25752 * 13 3 2 15 15 C 1.53001 * 109.47147 * 86.66298 * 14 13 3 16 16 C 1.53006 * 112.84892 * 56.07412 * 15 14 13 17 17 O 1.42895 * 109.47340 * 294.34918 * 16 15 14 18 18 C 1.42896 * 114.00004 * 179.97438 * 17 16 15 19 19 C 1.53781 * 113.61341 * 284.88618 * 15 14 13 20 20 C 1.53956 * 87.01686 * 220.04632 * 19 15 14 21 21 C 1.53781 * 113.61441 * 187.27328 * 15 14 13 22 22 H 1.09006 * 109.46937 * 172.95630 * 1 2 3 23 23 H 1.09001 * 109.47210 * 292.94949 * 1 2 3 24 24 H 1.08995 * 109.47206 * 52.95099 * 1 2 3 25 25 H 1.09001 * 109.47490 * 120.00185 * 2 1 3 26 26 H 1.08999 * 109.46980 * 240.00270 * 2 1 3 27 27 H 0.96998 * 119.99750 * 179.97438 * 8 7 5 28 28 H 1.00902 * 111.00288 * 320.30751 * 13 3 2 29 29 H 1.09000 * 109.47054 * 206.66302 * 14 13 3 30 30 H 1.08997 * 109.46615 * 326.66634 * 14 13 3 31 31 H 1.09008 * 109.46259 * 54.34497 * 16 15 14 32 32 H 1.08997 * 109.46765 * 174.33919 * 16 15 14 33 33 H 1.09002 * 109.47566 * 299.99863 * 18 17 16 34 34 H 1.09003 * 109.47387 * 59.99893 * 18 17 16 35 35 H 1.09000 * 109.47690 * 179.97438 * 18 17 16 36 36 H 1.09004 * 113.61078 * 334.55885 * 19 15 14 37 37 H 1.08995 * 113.62175 * 105.47159 * 19 15 14 38 38 H 1.09002 * 113.53901 * 270.81094 * 20 19 15 39 39 H 1.09005 * 113.74812 * 139.94090 * 20 19 15 40 40 H 1.08998 * 113.61362 * 254.53005 * 21 15 14 41 41 H 1.08994 * 113.61276 * 25.34875 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1263 1.4438 -0.0882 5 6 1.4406 2.1871 -1.1651 6 1 0.8307 3.0613 -0.9911 7 6 1.6708 1.7525 -2.4532 8 7 1.1482 2.4026 -3.4699 9 14 2.7252 0.2401 -2.7540 10 1 1.8639 -0.9696 -2.7647 11 1 3.4136 0.3692 -4.0635 12 1 3.7362 0.1185 -1.6731 13 7 1.6496 2.0999 1.2543 14 6 2.6135 1.8080 2.3238 15 6 3.7575 2.8227 2.2702 16 6 3.2715 4.2710 2.3564 17 8 2.5014 4.5849 1.1943 18 6 1.9967 5.9217 1.1753 19 6 4.7491 2.5730 1.1217 20 6 5.8669 2.9429 2.1136 21 6 4.9113 2.5016 3.2348 22 1 -0.3633 -1.0200 -0.1260 23 1 -0.3634 0.4007 0.9463 24 1 -0.3633 0.6191 -0.8202 25 1 1.8934 -0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.3105 2.0969 -4.3760 28 1 0.7154 1.8332 1.5268 29 1 2.1145 1.8738 3.2906 30 1 3.0128 0.8029 2.1885 31 1 2.6538 4.3945 3.2460 32 1 4.1304 4.9395 2.4147 33 1 1.3525 6.0793 2.0402 34 1 2.8290 6.6248 1.2092 35 1 1.4241 6.0809 0.2615 36 1 4.7835 1.5344 0.7926 37 1 4.6467 3.2767 0.2956 38 1 6.0984 4.0079 2.1312 39 1 6.7557 2.3179 2.0263 40 1 4.9396 3.1478 4.1122 41 1 4.9892 1.4438 3.4856 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308959568.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:34 Heat of formation + Delta-G solvation = -35.655331 kcal Electronic energy + Delta-G solvation = -19200.597943 eV Core-core repulsion = 16501.944986 eV Total energy + Delta-G solvation = -2698.652957 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.77426 -38.05853 -37.55081 -34.28328 -32.76907 -29.74066 -28.64258 -27.13880 -26.36534 -25.61352 -24.96188 -22.95895 -20.89359 -19.27940 -18.35900 -17.10701 -17.06124 -16.64707 -16.49524 -16.11075 -15.30782 -15.22090 -14.84601 -14.64226 -14.42256 -14.07004 -13.69696 -13.27868 -13.07878 -12.83332 -12.75299 -12.53924 -12.41574 -12.26545 -11.98027 -11.79695 -11.56240 -11.37452 -11.13839 -11.09835 -10.81192 -10.72574 -10.54075 -10.15020 -8.65367 -8.13141 -6.06687 1.29037 1.34235 1.42398 2.39452 3.10273 3.22853 3.61561 3.77273 3.99585 4.07615 4.17648 4.31952 4.39687 4.42621 4.51431 4.54501 4.63024 4.69291 4.75625 4.80738 4.85578 4.92111 4.94076 4.99651 5.02319 5.09118 5.14208 5.20250 5.24346 5.35048 5.42556 5.53521 5.62228 5.65112 5.87369 6.27191 6.75993 6.94267 6.98483 7.04034 7.54461 9.05156 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021446 B = 0.009406 C = 0.008778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.275377 B = 2976.247845 C = 3188.927213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.161 4.161 3 C 0.194 3.806 4 H 0.032 0.968 5 C -0.450 4.450 6 H 0.035 0.965 7 C 0.007 3.993 8 N -0.958 5.958 9 Si 0.934 3.066 10 H -0.273 1.273 11 H -0.307 1.307 12 H -0.256 1.256 13 N -0.658 5.658 14 C 0.073 3.927 15 C -0.076 4.076 16 C 0.098 3.902 17 O -0.367 6.367 18 C 0.033 3.967 19 C -0.132 4.132 20 C -0.135 4.135 21 C -0.110 4.110 22 H 0.049 0.951 23 H 0.062 0.938 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.030 0.970 27 H 0.257 0.743 28 H 0.328 0.672 29 H 0.076 0.924 30 H 0.027 0.973 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.041 0.959 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.038 0.962 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.626 -0.323 15.936 17.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.200 4.200 3 C 0.084 3.916 4 H 0.050 0.950 5 C -0.489 4.489 6 H 0.053 0.947 7 C -0.187 4.187 8 N -0.601 5.601 9 Si 0.764 3.236 10 H -0.199 1.199 11 H -0.235 1.235 12 H -0.180 1.180 13 N -0.287 5.287 14 C -0.057 4.057 15 C -0.077 4.077 16 C 0.021 3.979 17 O -0.284 6.284 18 C -0.064 4.064 19 C -0.170 4.170 20 C -0.172 4.172 21 C -0.148 4.148 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.146 0.854 29 H 0.094 0.906 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.863 0.151 15.464 16.919 hybrid contribution -0.041 -1.196 -0.797 1.438 sum 6.822 -1.045 14.667 16.210 Atomic orbital electron populations 1.21553 0.95115 1.00298 1.01896 1.22503 0.97938 1.00437 0.99142 1.19514 0.95325 0.87907 0.88843 0.94999 1.21072 1.27985 1.10249 0.89602 0.94668 1.25578 0.97428 0.99493 0.96238 1.70043 1.48411 1.42749 0.98937 0.86086 0.80057 0.81130 0.76352 1.19925 1.23535 1.18032 1.60244 1.04045 1.62231 1.02201 1.21884 0.93889 0.95273 0.94605 1.21935 0.93893 0.94639 0.97250 1.22049 0.93610 0.93907 0.88344 1.88380 1.70189 1.28458 1.41418 1.22657 0.97892 0.84511 1.01363 1.22860 0.97246 0.99889 0.97017 1.22888 0.96777 1.01569 0.95949 1.22853 0.93097 1.02369 0.96476 0.93178 0.91954 0.93831 0.92222 0.95162 0.93373 0.85389 0.90578 0.95455 0.93151 0.93812 0.93570 0.94013 0.91909 0.92158 0.94255 0.89892 0.90690 0.89535 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 9.39 71.98 0.68 -4.48 16 2 C -0.16 -6.70 5.20 30.59 0.16 -6.55 16 3 C 0.19 8.94 1.66 44.17 0.07 9.02 16 4 H 0.03 1.56 4.04 -2.39 -0.01 1.55 16 5 C -0.45 -25.77 7.81 25.60 0.20 -25.57 16 6 H 0.04 2.30 8.06 -2.91 -0.02 2.28 16 7 C 0.01 0.43 5.44 84.66 0.46 0.89 16 8 N -0.96 -61.77 13.96 21.45 0.30 -61.47 16 9 Si 0.93 47.01 24.32 68.60 1.67 48.68 16 10 H -0.27 -13.15 6.91 99.48 0.69 -12.47 16 11 H -0.31 -15.65 7.11 99.48 0.71 -14.95 16 12 H -0.26 -12.07 6.53 99.48 0.65 -11.42 16 13 N -0.66 -25.90 4.48 -495.45 -2.22 -28.12 16 14 C 0.07 2.28 5.27 86.30 0.46 2.74 16 15 C -0.08 -2.24 0.91 -51.65 -0.05 -2.29 16 16 C 0.10 2.91 5.14 71.98 0.37 3.28 16 17 O -0.37 -14.20 8.87 -148.98 -1.32 -15.52 16 18 C 0.03 1.05 11.01 113.37 1.25 2.29 16 19 C -0.13 -4.44 5.57 31.18 0.17 -4.27 16 20 C -0.13 -3.21 7.74 31.18 0.24 -2.97 16 21 C -0.11 -2.35 7.23 31.12 0.23 -2.12 16 22 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 23 H 0.06 2.13 6.72 -2.39 -0.02 2.11 16 24 H 0.04 2.04 6.81 -2.39 -0.02 2.02 16 25 H 0.06 2.13 7.34 -2.39 -0.02 2.11 16 26 H 0.03 1.35 3.41 -2.39 -0.01 1.34 16 27 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 28 H 0.33 12.33 6.78 -89.69 -0.61 11.73 16 29 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.03 0.85 7.00 -2.39 -0.02 0.84 16 31 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.04 1.17 7.32 -2.39 -0.02 1.15 16 33 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.06 2.17 6.99 -2.38 -0.02 2.15 16 37 H 0.04 1.59 7.98 -2.39 -0.02 1.57 16 38 H 0.08 1.86 7.61 -2.39 -0.02 1.84 16 39 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.09 1.48 8.10 -2.39 -0.02 1.46 16 41 H 0.09 1.78 8.10 -2.39 -0.02 1.76 16 Total: -1.00 -68.25 306.10 2.97 -65.27 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.31 Total: 21.18 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: 4.23 Total: -30.03 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -1.92 Total: -89.58 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -1.32 Total: -15.52 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.67 Total: 48.68 kcal Total: -68.25 2.97 -65.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308959568.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.619 kcal (2) G-P(sol) polarization free energy of solvation -68.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds