Wall clock time and date at job start Sun Mar 29 2020 23:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 H 1.09000 * 109.47239 * 303.53796 * 3 2 1 5 5 C 1.50702 * 109.46971 * 183.54582 * 3 2 1 6 6 H 1.08007 * 119.99445 * 239.99657 * 5 3 2 7 7 C 1.37870 * 120.00466 * 59.99399 * 5 3 2 8 8 N 1.31516 * 120.00008 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00251 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46760 * 60.00262 * 9 7 5 11 11 H 1.48498 * 109.47079 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47192 * 300.00506 * 9 7 5 13 13 N 1.46898 * 109.47530 * 63.54247 * 3 2 1 14 14 C 1.46899 * 110.99908 * 204.68258 * 13 3 2 15 15 C 1.53005 * 109.47047 * 174.75196 * 14 13 3 16 16 C 1.52996 * 109.47218 * 59.78806 * 15 14 13 17 17 O 1.42901 * 109.46892 * 299.78822 * 15 14 13 18 18 C 1.42900 * 114.00115 * 301.27486 * 17 15 14 19 19 C 1.52997 * 109.47137 * 179.79098 * 15 14 13 20 20 C 1.53005 * 117.49644 * 253.74560 * 19 15 14 21 21 C 1.52996 * 117.49940 * 185.08895 * 19 15 14 22 22 H 1.09003 * 109.47450 * 294.83499 * 1 2 3 23 23 H 1.09004 * 109.47306 * 174.83284 * 1 2 3 24 24 H 1.09005 * 109.47208 * 54.83161 * 1 2 3 25 25 H 1.09007 * 109.46952 * 119.99427 * 2 1 3 26 26 H 1.08995 * 109.46984 * 239.99239 * 2 1 3 27 27 H 0.97002 * 120.00442 * 180.02562 * 8 7 5 28 28 H 1.00899 * 110.99755 * 80.72406 * 13 3 2 29 29 H 1.09008 * 109.47068 * 294.74974 * 14 13 3 30 30 H 1.09000 * 109.47491 * 54.74680 * 14 13 3 31 31 H 1.09003 * 109.47067 * 60.00114 * 16 15 14 32 32 H 1.08994 * 109.47511 * 180.02562 * 16 15 14 33 33 H 1.09002 * 109.47593 * 300.00309 * 16 15 14 34 34 H 1.09005 * 109.46826 * 306.42756 * 18 17 15 35 35 H 1.08999 * 109.46892 * 66.43042 * 18 17 15 36 36 H 1.08998 * 109.47131 * 186.42873 * 18 17 15 37 37 H 1.09004 * 115.55474 * 39.41258 * 19 15 14 38 38 H 1.08998 * 117.50223 * 0.02562 * 20 19 15 39 39 H 1.09006 * 117.49489 * 145.01924 * 20 19 15 40 40 H 1.09005 * 117.49892 * 214.97728 * 21 19 15 41 41 H 1.09002 * 117.49772 * 359.97438 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6258 1.9743 -0.8566 5 6 3.5444 1.4433 -0.0879 6 1 4.1310 1.8946 0.6988 7 6 4.1720 0.8681 -1.1723 8 7 3.4578 0.3190 -2.1304 9 14 6.0369 0.8686 -1.2808 10 1 6.6007 0.1436 -0.1139 11 1 6.4600 0.1934 -2.5340 12 1 6.5324 2.2684 -1.2805 13 7 1.6215 2.1099 1.2399 14 6 1.5542 3.5659 1.0571 15 6 0.9915 4.2135 2.3240 16 6 1.8996 3.8855 3.5109 17 8 -0.3213 3.7078 2.5746 18 6 -1.2456 3.9371 1.5092 19 6 0.9264 5.7304 2.1356 20 6 1.9604 6.5795 2.8778 21 6 0.5009 6.5741 3.3389 22 1 -0.3634 0.4316 0.9326 23 1 -0.3634 -1.0235 -0.0926 24 1 -0.3634 0.5919 -0.8401 25 1 1.8933 -0.5138 0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 3.8993 -0.0861 -2.8933 28 1 2.2342 1.8693 2.0046 29 1 2.5542 3.9544 0.8638 30 1 0.9054 3.7965 0.2122 31 1 2.9010 4.2712 3.3197 32 1 1.4985 4.3464 4.4135 33 1 1.9460 2.8048 3.6452 34 1 -1.2560 4.9980 1.2592 35 1 -0.9427 3.3606 0.6351 36 1 -2.2432 3.6274 1.8207 37 1 0.6131 6.0685 1.1478 38 1 2.6874 6.0574 3.4999 39 1 2.3271 7.4764 2.3783 40 1 -0.0922 7.4675 3.1427 41 1 0.2669 6.0484 4.2646 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308993659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:13 Heat of formation + Delta-G solvation = -27.850514 kcal Electronic energy + Delta-G solvation = -18662.743485 eV Core-core repulsion = 15964.428970 eV Total energy + Delta-G solvation = -2698.314515 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.42128 -36.12504 -35.60359 -32.67851 -31.37386 -29.68762 -26.94033 -25.83251 -25.35384 -22.99528 -22.34727 -21.57941 -19.47327 -18.74096 -16.75727 -16.47445 -15.41728 -15.22367 -14.69770 -14.56769 -13.74301 -13.50524 -13.27345 -12.79383 -12.49285 -12.34696 -11.96580 -11.80137 -11.35046 -11.33549 -11.18081 -11.10700 -11.05761 -10.85543 -10.62687 -10.31409 -10.22547 -10.12932 -9.89823 -9.57563 -9.53149 -9.08747 -8.82853 -8.36366 -7.15739 -5.97888 -4.11483 3.27740 3.33131 3.35314 3.76618 4.37032 4.40171 4.67767 5.00476 5.07596 5.21746 5.26308 5.45377 5.57550 5.65836 5.72365 5.78870 5.88795 5.90966 6.04560 6.10777 6.18070 6.22160 6.26193 6.39825 6.43871 6.53359 6.56881 6.65395 6.77626 7.16915 7.23410 7.47866 7.61348 7.73122 7.80310 8.12061 8.18794 8.36846 8.70766 9.02216 9.56139 11.01593 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024041 B = 0.007225 C = 0.005988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.421348 B = 3874.713722 C = 4674.800596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.029 0.971 5 C -0.546 4.546 6 H 0.052 0.948 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.678 5.678 14 C 0.049 3.951 15 C 0.150 3.850 16 C -0.141 4.141 17 O -0.363 6.363 18 C 0.035 3.965 19 C -0.178 4.178 20 C -0.178 4.178 21 C -0.169 4.169 22 H 0.049 0.951 23 H 0.023 0.977 24 H 0.034 0.966 25 H 0.030 0.970 26 H 0.088 0.912 27 H 0.261 0.739 28 H 0.327 0.673 29 H 0.034 0.966 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.031 0.969 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.376 9.042 7.852 13.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.143 4.143 3 C 0.108 3.892 4 H 0.047 0.953 5 C -0.585 4.585 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.308 5.308 14 C -0.081 4.081 15 C 0.110 3.890 16 C -0.198 4.198 17 O -0.281 6.281 18 C -0.062 4.062 19 C -0.197 4.197 20 C -0.215 4.215 21 C -0.206 4.206 22 H 0.068 0.932 23 H 0.042 0.958 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.107 0.893 27 H 0.071 0.929 28 H 0.144 0.856 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.085 8.740 7.707 13.145 hybrid contribution 2.083 0.425 -0.639 2.220 sum -4.002 9.165 7.067 12.246 Atomic orbital electron populations 1.21682 0.98976 0.98126 1.00463 1.21477 0.92103 0.99203 1.01561 1.19136 0.92395 0.91134 0.86565 0.95315 1.21851 0.92802 1.37801 1.06025 0.92995 1.24928 0.97907 0.95017 0.95625 1.69871 1.34991 1.37837 1.09670 0.86734 0.86199 0.78128 0.77376 1.20283 1.21236 1.20454 1.60844 1.56312 1.04670 1.08942 1.22246 0.99113 0.91209 0.95574 1.20976 0.83933 0.88202 0.95911 1.21837 0.98093 1.03145 0.96710 1.87897 1.19425 1.79990 1.40836 1.22593 0.92701 0.98940 0.91919 1.22898 1.05246 0.94580 0.96965 1.23091 0.92650 1.01768 1.03967 1.22836 0.97420 1.01446 0.98862 0.93165 0.95819 0.94689 0.95132 0.89345 0.92856 0.85571 0.94741 0.91998 0.91284 0.92519 0.90928 0.95001 0.93206 0.90862 0.88114 0.88047 0.89174 0.89372 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.72 37.16 0.36 -2.48 16 2 C -0.10 -2.54 5.44 -26.73 -0.15 -2.69 16 3 C 0.22 5.34 1.99 -68.87 -0.14 5.20 16 4 H 0.03 0.79 7.72 -51.93 -0.40 0.39 16 5 C -0.55 -14.68 8.42 -34.44 -0.29 -14.97 16 6 H 0.05 1.38 7.75 -52.48 -0.41 0.98 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -25.08 11.30 55.43 0.63 -24.46 16 9 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.68 -14.23 5.49 -107.95 -0.59 -14.82 16 14 C 0.05 0.92 4.08 -3.82 -0.02 0.91 16 15 C 0.15 2.34 0.72 -90.62 -0.07 2.28 16 16 C -0.14 -2.03 7.16 37.16 0.27 -1.77 16 17 O -0.36 -6.05 10.19 -35.23 -0.36 -6.41 16 18 C 0.04 0.52 10.21 101.05 1.03 1.55 16 19 C -0.18 -2.40 4.05 -90.62 -0.37 -2.77 16 20 C -0.18 -2.08 9.66 -26.69 -0.26 -2.34 16 21 C -0.17 -1.95 9.85 -26.70 -0.26 -2.21 16 22 H 0.05 1.03 7.86 -51.93 -0.41 0.62 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.09 2.38 5.98 -51.93 -0.31 2.07 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.33 6.86 6.70 -39.29 -0.26 6.59 16 29 H 0.03 0.70 8.08 -51.92 -0.42 0.28 16 30 H 0.06 1.20 6.44 -51.93 -0.33 0.87 16 31 H 0.07 0.94 6.74 -51.93 -0.35 0.59 16 32 H 0.06 0.74 6.96 -51.93 -0.36 0.37 16 33 H 0.07 1.13 6.69 -51.93 -0.35 0.78 16 34 H 0.03 0.42 6.74 -51.93 -0.35 0.07 16 35 H 0.05 0.81 6.75 -51.93 -0.35 0.46 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.10 1.36 7.75 -51.93 -0.40 0.96 16 38 H 0.10 1.16 5.89 -51.93 -0.31 0.86 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.10 1.13 7.28 -51.93 -0.38 0.75 16 LS Contribution 316.94 15.07 4.78 4.78 Total: -1.00 -27.87 316.94 -7.61 -35.48 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -7.06 Total: 6.84 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 0.02 Total: -17.53 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.03 Total: -39.27 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.36 Total: -6.41 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.87 -7.61 -35.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308993659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.630 kcal (2) G-P(sol) polarization free energy of solvation -27.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds