Wall clock time and date at job start Sun Mar 29 2020 23:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 H 1.09000 * 109.47239 * 303.53796 * 3 2 1 5 5 C 1.50702 * 109.46971 * 183.54582 * 3 2 1 6 6 H 1.08007 * 119.99445 * 239.99657 * 5 3 2 7 7 C 1.37870 * 120.00466 * 59.99399 * 5 3 2 8 8 N 1.31516 * 120.00008 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00251 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46760 * 60.00262 * 9 7 5 11 11 H 1.48498 * 109.47079 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47192 * 300.00506 * 9 7 5 13 13 N 1.46898 * 109.47530 * 63.54247 * 3 2 1 14 14 C 1.46899 * 110.99908 * 204.68258 * 13 3 2 15 15 C 1.53005 * 109.47047 * 174.75196 * 14 13 3 16 16 C 1.52996 * 109.47218 * 59.78806 * 15 14 13 17 17 O 1.42901 * 109.46892 * 299.78822 * 15 14 13 18 18 C 1.42900 * 114.00115 * 301.27486 * 17 15 14 19 19 C 1.52997 * 109.47137 * 179.79098 * 15 14 13 20 20 C 1.53005 * 117.49644 * 253.74560 * 19 15 14 21 21 C 1.52996 * 117.49940 * 185.08895 * 19 15 14 22 22 H 1.09003 * 109.47450 * 294.83499 * 1 2 3 23 23 H 1.09004 * 109.47306 * 174.83284 * 1 2 3 24 24 H 1.09005 * 109.47208 * 54.83161 * 1 2 3 25 25 H 1.09007 * 109.46952 * 119.99427 * 2 1 3 26 26 H 1.08995 * 109.46984 * 239.99239 * 2 1 3 27 27 H 0.97002 * 120.00442 * 180.02562 * 8 7 5 28 28 H 1.00899 * 110.99755 * 80.72406 * 13 3 2 29 29 H 1.09008 * 109.47068 * 294.74974 * 14 13 3 30 30 H 1.09000 * 109.47491 * 54.74680 * 14 13 3 31 31 H 1.09003 * 109.47067 * 60.00114 * 16 15 14 32 32 H 1.08994 * 109.47511 * 180.02562 * 16 15 14 33 33 H 1.09002 * 109.47593 * 300.00309 * 16 15 14 34 34 H 1.09005 * 109.46826 * 306.42756 * 18 17 15 35 35 H 1.08999 * 109.46892 * 66.43042 * 18 17 15 36 36 H 1.08998 * 109.47131 * 186.42873 * 18 17 15 37 37 H 1.09004 * 115.55474 * 39.41258 * 19 15 14 38 38 H 1.08998 * 117.50223 * 0.02562 * 20 19 15 39 39 H 1.09006 * 117.49489 * 145.01924 * 20 19 15 40 40 H 1.09005 * 117.49892 * 214.97728 * 21 19 15 41 41 H 1.09002 * 117.49772 * 359.97438 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6258 1.9743 -0.8566 5 6 3.5444 1.4433 -0.0879 6 1 4.1310 1.8946 0.6988 7 6 4.1720 0.8681 -1.1723 8 7 3.4578 0.3190 -2.1304 9 14 6.0369 0.8686 -1.2808 10 1 6.6007 0.1436 -0.1139 11 1 6.4600 0.1934 -2.5340 12 1 6.5324 2.2684 -1.2805 13 7 1.6215 2.1099 1.2399 14 6 1.5542 3.5659 1.0571 15 6 0.9915 4.2135 2.3240 16 6 1.8996 3.8855 3.5109 17 8 -0.3213 3.7078 2.5746 18 6 -1.2456 3.9371 1.5092 19 6 0.9264 5.7304 2.1356 20 6 1.9604 6.5795 2.8778 21 6 0.5009 6.5741 3.3389 22 1 -0.3634 0.4316 0.9326 23 1 -0.3634 -1.0235 -0.0926 24 1 -0.3634 0.5919 -0.8401 25 1 1.8933 -0.5138 0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 3.8993 -0.0861 -2.8933 28 1 2.2342 1.8693 2.0046 29 1 2.5542 3.9544 0.8638 30 1 0.9054 3.7965 0.2122 31 1 2.9010 4.2712 3.3197 32 1 1.4985 4.3464 4.4135 33 1 1.9460 2.8048 3.6452 34 1 -1.2560 4.9980 1.2592 35 1 -0.9427 3.3606 0.6351 36 1 -2.2432 3.6274 1.8207 37 1 0.6131 6.0685 1.1478 38 1 2.6874 6.0574 3.4999 39 1 2.3271 7.4764 2.3783 40 1 -0.0922 7.4675 3.1427 41 1 0.2669 6.0484 4.2646 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308993659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:13 Heat of formation + Delta-G solvation = -44.524039 kcal Electronic energy + Delta-G solvation = -18663.466503 eV Core-core repulsion = 15964.428970 eV Total energy + Delta-G solvation = -2699.037533 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.63815 -37.76664 -36.89428 -34.48790 -33.19599 -31.13854 -28.64738 -27.24995 -26.76464 -24.76805 -23.38786 -22.91207 -21.40753 -19.95543 -18.77347 -17.61557 -16.96632 -16.66959 -16.30249 -15.82748 -15.49870 -15.06963 -14.56084 -14.51915 -13.98026 -13.68403 -13.42230 -13.27940 -13.09198 -13.00884 -12.78276 -12.55691 -12.45066 -12.40529 -12.06895 -12.03937 -11.53933 -11.50615 -11.39944 -11.20934 -11.06017 -10.93230 -10.47222 -10.18834 -8.98850 -8.04760 -6.28362 1.38176 1.39024 1.46512 2.39322 2.72135 3.13561 3.25277 3.51325 3.91508 3.95234 4.13262 4.17783 4.28011 4.42839 4.59597 4.64383 4.70396 4.76105 4.77414 4.84125 4.89860 4.92623 4.95114 4.99115 5.06885 5.07737 5.17161 5.22958 5.31552 5.42349 5.43686 5.51772 5.63450 5.76948 6.10601 6.19847 6.38600 6.48305 6.83603 7.02848 7.43400 8.90753 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024041 B = 0.007225 C = 0.005988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.421348 B = 3874.713722 C = 4674.800596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.101 4.101 3 C 0.223 3.777 4 H -0.006 1.006 5 C -0.561 4.561 6 H 0.050 0.950 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.950 3.050 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.275 1.275 13 N -0.668 5.668 14 C 0.054 3.946 15 C 0.156 3.844 16 C -0.139 4.139 17 O -0.377 6.377 18 C 0.035 3.965 19 C -0.199 4.199 20 C -0.172 4.172 21 C -0.152 4.152 22 H 0.056 0.944 23 H 0.043 0.957 24 H 0.028 0.972 25 H 0.027 0.973 26 H 0.060 0.940 27 H 0.262 0.738 28 H 0.329 0.671 29 H 0.018 0.982 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.026 0.974 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.309 10.117 9.215 14.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.140 4.140 3 C 0.115 3.885 4 H 0.012 0.988 5 C -0.600 4.600 6 H 0.068 0.932 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.776 3.224 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.200 1.200 13 N -0.298 5.298 14 C -0.077 4.077 15 C 0.116 3.884 16 C -0.196 4.196 17 O -0.295 6.295 18 C -0.061 4.061 19 C -0.218 4.218 20 C -0.209 4.209 21 C -0.189 4.189 22 H 0.075 0.925 23 H 0.062 0.938 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.146 0.854 29 H 0.036 0.964 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.025 9.825 9.084 14.675 hybrid contribution 2.029 0.111 -1.075 2.299 sum -3.996 9.935 8.009 13.372 Atomic orbital electron populations 1.21520 0.96439 0.99367 1.00506 1.21344 0.94339 0.98393 0.99910 1.18904 0.91355 0.91394 0.86882 0.98786 1.22159 0.94034 1.37704 1.06097 0.93167 1.25675 1.02241 0.94738 0.95357 1.70005 1.36613 1.38386 1.10074 0.85741 0.80982 0.78216 0.77474 1.19644 1.20900 1.19991 1.60777 1.55699 1.06026 1.07289 1.22265 0.98141 0.89856 0.97413 1.20883 0.83651 0.89487 0.94363 1.21839 0.98346 1.02421 0.96973 1.87875 1.19805 1.80472 1.41397 1.22654 0.93113 0.99615 0.90731 1.22767 1.07979 0.93164 0.97873 1.23196 0.92855 1.01555 1.03259 1.22902 0.97376 1.01125 0.97480 0.92515 0.93813 0.95266 0.95437 0.92167 0.92886 0.85370 0.96423 0.93248 0.90617 0.90649 0.92303 0.93465 0.95577 0.88973 0.88522 0.87737 0.87948 0.87677 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.06 9.72 71.98 0.70 -4.36 16 2 C -0.10 -4.99 5.44 30.59 0.17 -4.82 16 3 C 0.22 11.36 1.99 44.17 0.09 11.44 16 4 H -0.01 -0.33 7.72 -2.39 -0.02 -0.35 16 5 C -0.56 -30.67 8.42 25.60 0.22 -30.45 16 6 H 0.05 2.70 7.75 -2.91 -0.02 2.68 16 7 C 0.02 1.10 5.30 84.65 0.45 1.55 16 8 N -0.91 -52.65 11.30 21.44 0.24 -52.41 16 9 Si 0.95 43.51 29.54 68.60 2.03 45.54 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 13 N -0.67 -28.47 5.49 -495.44 -2.72 -31.19 16 14 C 0.05 2.05 4.08 86.31 0.35 2.40 16 15 C 0.16 4.74 0.72 -10.79 -0.01 4.74 16 16 C -0.14 -3.81 7.16 71.98 0.52 -3.30 16 17 O -0.38 -12.11 10.19 -148.98 -1.52 -13.62 16 18 C 0.04 1.00 10.21 113.37 1.16 2.16 16 19 C -0.20 -5.04 4.05 -10.79 -0.04 -5.09 16 20 C -0.17 -3.59 9.66 30.62 0.30 -3.30 16 21 C -0.15 -3.06 9.85 30.62 0.30 -2.76 16 22 H 0.06 2.28 7.86 -2.39 -0.02 2.26 16 23 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 24 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 25 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.06 3.32 5.98 -2.39 -0.01 3.31 16 27 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 28 H 0.33 13.88 6.70 -89.69 -0.60 13.28 16 29 H 0.02 0.73 8.08 -2.38 -0.02 0.71 16 30 H 0.05 1.99 6.44 -2.39 -0.02 1.97 16 31 H 0.08 1.95 6.74 -2.39 -0.02 1.94 16 32 H 0.07 1.78 6.96 -2.39 -0.02 1.76 16 33 H 0.06 1.77 6.69 -2.39 -0.02 1.75 16 34 H 0.05 1.18 6.74 -2.38 -0.02 1.17 16 35 H 0.03 0.85 6.75 -2.39 -0.02 0.84 16 36 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.10 2.52 7.75 -2.39 -0.02 2.50 16 38 H 0.10 2.12 5.89 -2.39 -0.01 2.11 16 39 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 40 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 41 H 0.10 1.97 7.28 -2.39 -0.02 1.95 16 Total: -1.00 -59.61 316.94 2.61 -57.00 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.39 Total: 26.46 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 4.19 Total: -31.78 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -2.48 Total: -83.59 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -1.52 Total: -13.62 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -59.61 2.61 -57.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308993659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.473 kcal (2) G-P(sol) polarization free energy of solvation -59.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds