Wall clock time and date at job start Sun Mar 29 2020 23:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47342 * 2 1 4 4 H 1.09000 * 109.47156 * 54.89473 * 3 2 1 5 5 C 1.50694 * 109.46891 * 174.89881 * 3 2 1 6 6 H 1.08009 * 119.99902 * 120.00560 * 5 3 2 7 7 C 1.37871 * 120.00312 * 299.99326 * 5 3 2 8 8 N 1.31514 * 119.99935 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00058 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47176 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47181 * 120.00439 * 9 7 5 12 12 H 1.48503 * 109.47089 * 240.00351 * 9 7 5 13 13 N 1.46900 * 109.46648 * 294.90045 * 3 2 1 14 14 C 1.46899 * 110.99926 * 155.03696 * 13 3 2 15 15 C 1.52997 * 109.47422 * 175.01075 * 14 13 3 16 16 C 1.53005 * 109.46739 * 299.53870 * 15 14 13 17 17 O 1.42899 * 109.47302 * 59.53436 * 15 14 13 18 18 C 1.42905 * 113.99849 * 63.46452 * 17 15 14 19 19 C 1.52997 * 109.47498 * 179.54195 * 15 14 13 20 20 C 1.52999 * 117.52248 * 111.28028 * 19 15 14 21 21 C 1.52998 * 117.50108 * 179.91229 * 19 15 14 22 22 H 1.09000 * 109.47233 * 185.69654 * 1 2 3 23 23 H 1.09003 * 109.47064 * 305.69589 * 1 2 3 24 24 H 1.08995 * 109.47293 * 65.69280 * 1 2 3 25 25 H 1.08996 * 109.47155 * 239.99481 * 2 1 3 26 26 H 1.09005 * 109.47122 * 119.99600 * 2 1 3 27 27 H 0.97005 * 119.99847 * 179.97438 * 8 7 5 28 28 H 1.00893 * 111.00378 * 31.07527 * 13 3 2 29 29 H 1.08997 * 109.47383 * 55.00836 * 14 13 3 30 30 H 1.09002 * 109.47168 * 295.00866 * 14 13 3 31 31 H 1.08997 * 109.46911 * 299.99582 * 16 15 14 32 32 H 1.08997 * 109.47297 * 60.00106 * 16 15 14 33 33 H 1.09003 * 109.46751 * 180.02562 * 16 15 14 34 34 H 1.08998 * 109.47054 * 179.19284 * 18 17 15 35 35 H 1.09008 * 109.46779 * 299.19588 * 18 17 15 36 36 H 1.08996 * 109.46778 * 59.18840 * 18 17 15 37 37 H 1.09011 * 115.54504 * 325.57850 * 19 15 14 38 38 H 1.09004 * 117.49559 * 214.97310 * 20 19 15 39 39 H 1.08993 * 117.49630 * 359.97438 * 20 19 15 40 40 H 1.08997 * 117.49915 * 359.97438 * 21 19 15 41 41 H 1.09004 * 117.49705 * 144.99332 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6040 1.9821 0.8407 5 6 3.5417 1.4442 0.1263 6 1 4.1483 1.8884 -0.6491 7 6 4.1412 0.8791 1.2318 8 7 3.4026 0.3380 2.1758 9 14 6.0026 0.8820 1.3887 10 1 6.5984 1.5461 0.2016 11 1 6.3947 1.6182 2.6173 12 1 6.4945 -0.5168 1.4715 13 7 1.6535 2.0984 -1.2563 14 6 1.5752 3.5555 -1.0869 15 6 1.2933 4.2119 -2.4399 16 6 2.4266 3.8812 -3.4131 17 8 0.0582 3.7170 -2.9613 18 6 -1.0816 4.0425 -2.1632 19 6 1.2004 5.7286 -2.2617 20 6 2.3145 6.5816 -2.8716 21 6 0.9235 6.5709 -3.5085 22 1 -0.3634 -1.0226 0.1020 23 1 -0.3633 0.5996 0.8346 24 1 -0.3633 0.4230 -0.9365 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.8244 -0.0599 2.9535 28 1 0.7822 1.7276 -1.6047 29 1 2.5213 3.9269 -0.6931 30 1 0.7719 3.7979 -0.3912 31 1 3.3687 4.2587 -3.0155 32 1 2.4928 2.8007 -3.5402 33 1 2.2260 4.3492 -4.3769 34 1 -1.9804 3.6438 -2.6336 35 1 -0.9668 3.6062 -1.1708 36 1 -1.1669 5.1256 -2.0762 37 1 0.7667 6.0655 -1.3200 38 1 2.6137 7.4798 -2.3312 39 1 3.1141 6.0623 -3.3997 40 1 0.8078 6.0445 -4.4559 41 1 0.3075 7.4620 -3.3873 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308993661.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:15 Heat of formation + Delta-G solvation = -26.625355 kcal Electronic energy + Delta-G solvation = -18651.979479 eV Core-core repulsion = 15953.718091 eV Total energy + Delta-G solvation = -2698.261388 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.48946 -36.23047 -35.66693 -32.60590 -31.45681 -29.70539 -26.94702 -26.04026 -25.31669 -23.05042 -22.32738 -21.63124 -19.57497 -18.79926 -16.46539 -16.28203 -15.54939 -15.23954 -14.88050 -14.59900 -13.98830 -13.62607 -13.39442 -12.75328 -12.54305 -12.19381 -12.10781 -11.88105 -11.59082 -11.29422 -11.16299 -10.95618 -10.92572 -10.84157 -10.57307 -10.39492 -10.21673 -10.07058 -9.92514 -9.79188 -9.59764 -9.02533 -8.96529 -8.31482 -7.11353 -5.93593 -3.97323 3.32675 3.40688 3.45821 3.73845 4.29162 4.47357 4.67110 5.01235 5.08861 5.26530 5.34425 5.47214 5.52446 5.60083 5.64785 5.70772 5.88611 5.92080 5.93634 6.15013 6.16849 6.20082 6.21024 6.25101 6.30463 6.44613 6.47710 6.53924 6.83722 6.89287 7.12226 7.24717 7.54360 7.60948 7.82886 7.96698 8.36815 8.45124 8.85013 9.11329 9.67673 11.11870 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023566 B = 0.007318 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.866316 B = 3825.513788 C = 4679.899358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.218 3.782 4 H -0.002 1.002 5 C -0.489 4.489 6 H 0.062 0.938 7 C 0.053 3.947 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.285 1.285 13 N -0.678 5.678 14 C 0.052 3.948 15 C 0.148 3.852 16 C -0.127 4.127 17 O -0.373 6.373 18 C 0.029 3.971 19 C -0.180 4.180 20 C -0.175 4.175 21 C -0.169 4.169 22 H 0.037 0.963 23 H 0.040 0.960 24 H 0.036 0.964 25 H 0.041 0.959 26 H 0.098 0.902 27 H 0.258 0.742 28 H 0.321 0.679 29 H 0.081 0.919 30 H 0.013 0.987 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.122 8.954 -8.071 13.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C 0.111 3.889 4 H 0.016 0.984 5 C -0.528 4.528 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.310 5.310 14 C -0.078 4.078 15 C 0.109 3.891 16 C -0.184 4.184 17 O -0.292 6.292 18 C -0.067 4.067 19 C -0.199 4.199 20 C -0.212 4.212 21 C -0.206 4.206 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.116 0.884 27 H 0.068 0.932 28 H 0.139 0.861 29 H 0.100 0.900 30 H 0.031 0.969 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.456 8.762 -8.307 13.249 hybrid contribution 0.039 0.271 1.186 1.217 sum -5.417 9.033 -7.121 12.714 Atomic orbital electron populations 1.21877 0.99694 0.99635 0.99511 1.21751 0.91168 1.00388 1.03012 1.19151 0.95368 0.89927 0.84451 0.98439 1.21262 0.91277 1.35997 1.04270 0.91997 1.24965 0.98040 0.95757 0.95891 1.69889 1.34571 1.39604 1.09710 0.86516 0.85961 0.77585 0.77786 1.19775 1.21327 1.21166 1.60562 1.35914 1.01445 1.33033 1.22282 1.00610 0.91309 0.93623 1.21105 0.84806 0.88327 0.94863 1.21690 0.95772 1.04011 0.96895 1.87938 1.14559 1.77222 1.49471 1.22646 0.88902 0.99338 0.95854 1.22912 1.04868 0.94493 0.97665 1.23096 0.92537 1.01592 1.03941 1.22826 0.99121 1.01370 0.97330 0.94425 0.94094 0.94495 0.94009 0.88356 0.93221 0.86063 0.90033 0.96863 0.91240 0.90063 0.93477 0.90436 0.94173 0.94291 0.88226 0.89157 0.87787 0.88533 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.63 37.16 0.36 -2.61 16 2 C -0.12 -2.98 5.36 -26.73 -0.14 -3.13 16 3 C 0.22 5.47 2.03 -68.87 -0.14 5.33 16 4 H 0.00 -0.05 7.86 -51.93 -0.41 -0.46 16 5 C -0.49 -13.50 8.54 -34.45 -0.29 -13.79 16 6 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.71 11.29 55.43 0.63 -25.08 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.68 -14.53 5.52 -107.96 -0.60 -15.12 16 14 C 0.05 1.00 4.10 -3.83 -0.02 0.98 16 15 C 0.15 2.36 0.71 -90.62 -0.06 2.30 16 16 C -0.13 -1.99 7.29 37.16 0.27 -1.72 16 17 O -0.37 -5.99 9.67 -35.23 -0.34 -6.33 16 18 C 0.03 0.40 10.34 101.05 1.04 1.44 16 19 C -0.18 -2.45 3.78 -90.62 -0.34 -2.79 16 20 C -0.17 -2.09 9.57 -26.73 -0.26 -2.34 16 21 C -0.17 -1.97 9.80 -26.73 -0.26 -2.23 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.04 0.67 6.63 -51.93 -0.34 0.33 16 25 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.32 6.59 6.07 -39.30 -0.24 6.36 16 29 H 0.08 1.71 7.92 -51.93 -0.41 1.30 16 30 H 0.01 0.26 6.65 -51.93 -0.35 -0.09 16 31 H 0.07 1.07 6.97 -51.93 -0.36 0.70 16 32 H 0.08 1.44 7.62 -51.93 -0.40 1.04 16 33 H 0.05 0.65 7.07 -51.93 -0.37 0.28 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.04 0.58 6.55 -51.92 -0.34 0.24 16 36 H 0.04 0.48 6.97 -51.93 -0.36 0.11 16 37 H 0.10 1.35 8.04 -51.92 -0.42 0.93 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.10 1.24 5.85 -51.93 -0.30 0.94 16 40 H 0.10 1.15 7.60 -51.93 -0.39 0.76 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 316.48 15.07 4.77 4.77 Total: -1.00 -28.38 316.48 -7.58 -35.95 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -7.08 Total: 6.43 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: 0.06 Total: -17.18 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.03 Total: -40.20 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.34 Total: -6.33 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.38 -7.58 -35.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308993661.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.330 kcal (2) G-P(sol) polarization free energy of solvation -28.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds