Wall clock time and date at job start Sun Mar 29 2020 23:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47342 * 2 1 4 4 H 1.09000 * 109.47156 * 54.89473 * 3 2 1 5 5 C 1.50694 * 109.46891 * 174.89881 * 3 2 1 6 6 H 1.08009 * 119.99902 * 120.00560 * 5 3 2 7 7 C 1.37871 * 120.00312 * 299.99326 * 5 3 2 8 8 N 1.31514 * 119.99935 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00058 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47176 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47181 * 120.00439 * 9 7 5 12 12 H 1.48503 * 109.47089 * 240.00351 * 9 7 5 13 13 N 1.46900 * 109.46648 * 294.90045 * 3 2 1 14 14 C 1.46899 * 110.99926 * 155.03696 * 13 3 2 15 15 C 1.52997 * 109.47422 * 175.01075 * 14 13 3 16 16 C 1.53005 * 109.46739 * 299.53870 * 15 14 13 17 17 O 1.42899 * 109.47302 * 59.53436 * 15 14 13 18 18 C 1.42905 * 113.99849 * 63.46452 * 17 15 14 19 19 C 1.52997 * 109.47498 * 179.54195 * 15 14 13 20 20 C 1.52999 * 117.52248 * 111.28028 * 19 15 14 21 21 C 1.52998 * 117.50108 * 179.91229 * 19 15 14 22 22 H 1.09000 * 109.47233 * 185.69654 * 1 2 3 23 23 H 1.09003 * 109.47064 * 305.69589 * 1 2 3 24 24 H 1.08995 * 109.47293 * 65.69280 * 1 2 3 25 25 H 1.08996 * 109.47155 * 239.99481 * 2 1 3 26 26 H 1.09005 * 109.47122 * 119.99600 * 2 1 3 27 27 H 0.97005 * 119.99847 * 179.97438 * 8 7 5 28 28 H 1.00893 * 111.00378 * 31.07527 * 13 3 2 29 29 H 1.08997 * 109.47383 * 55.00836 * 14 13 3 30 30 H 1.09002 * 109.47168 * 295.00866 * 14 13 3 31 31 H 1.08997 * 109.46911 * 299.99582 * 16 15 14 32 32 H 1.08997 * 109.47297 * 60.00106 * 16 15 14 33 33 H 1.09003 * 109.46751 * 180.02562 * 16 15 14 34 34 H 1.08998 * 109.47054 * 179.19284 * 18 17 15 35 35 H 1.09008 * 109.46779 * 299.19588 * 18 17 15 36 36 H 1.08996 * 109.46778 * 59.18840 * 18 17 15 37 37 H 1.09011 * 115.54504 * 325.57850 * 19 15 14 38 38 H 1.09004 * 117.49559 * 214.97310 * 20 19 15 39 39 H 1.08993 * 117.49630 * 359.97438 * 20 19 15 40 40 H 1.08997 * 117.49915 * 359.97438 * 21 19 15 41 41 H 1.09004 * 117.49705 * 144.99332 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6040 1.9821 0.8407 5 6 3.5417 1.4442 0.1263 6 1 4.1483 1.8884 -0.6491 7 6 4.1412 0.8791 1.2318 8 7 3.4026 0.3380 2.1758 9 14 6.0026 0.8820 1.3887 10 1 6.5984 1.5461 0.2016 11 1 6.3947 1.6182 2.6173 12 1 6.4945 -0.5168 1.4715 13 7 1.6535 2.0984 -1.2563 14 6 1.5752 3.5555 -1.0869 15 6 1.2933 4.2119 -2.4399 16 6 2.4266 3.8812 -3.4131 17 8 0.0582 3.7170 -2.9613 18 6 -1.0816 4.0425 -2.1632 19 6 1.2004 5.7286 -2.2617 20 6 2.3145 6.5816 -2.8716 21 6 0.9235 6.5709 -3.5085 22 1 -0.3634 -1.0226 0.1020 23 1 -0.3633 0.5996 0.8346 24 1 -0.3633 0.4230 -0.9365 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.8244 -0.0599 2.9535 28 1 0.7822 1.7276 -1.6047 29 1 2.5213 3.9269 -0.6931 30 1 0.7719 3.7979 -0.3912 31 1 3.3687 4.2587 -3.0155 32 1 2.4928 2.8007 -3.5402 33 1 2.2260 4.3492 -4.3769 34 1 -1.9804 3.6438 -2.6336 35 1 -0.9668 3.6062 -1.1708 36 1 -1.1669 5.1256 -2.0762 37 1 0.7667 6.0655 -1.3200 38 1 2.6137 7.4798 -2.3312 39 1 3.1141 6.0623 -3.3997 40 1 0.8078 6.0445 -4.4559 41 1 0.3075 7.4620 -3.3873 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308993661.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:15 Heat of formation + Delta-G solvation = -43.840155 kcal Electronic energy + Delta-G solvation = -18652.725969 eV Core-core repulsion = 15953.718091 eV Total energy + Delta-G solvation = -2699.007877 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.71257 -37.88848 -36.91944 -34.46553 -33.22471 -31.16487 -28.73462 -27.38250 -26.73504 -24.81064 -23.40812 -22.95168 -21.48296 -20.04708 -18.38414 -17.61853 -16.94564 -16.73362 -16.45976 -15.97949 -15.59173 -15.28767 -14.61804 -14.55782 -13.93502 -13.79474 -13.41084 -13.37367 -13.11709 -12.86233 -12.78183 -12.52597 -12.47210 -12.37440 -12.02471 -11.97932 -11.67928 -11.53952 -11.51393 -11.22123 -11.05092 -10.98369 -10.44806 -10.29874 -8.94135 -8.06468 -6.18282 1.39736 1.41946 1.53863 2.43893 2.68037 3.18142 3.19767 3.45881 3.92720 4.02150 4.03916 4.15866 4.25461 4.46885 4.48985 4.54888 4.55451 4.62978 4.68858 4.79503 4.80149 4.88265 4.91620 4.96736 5.04718 5.07060 5.10981 5.22441 5.26414 5.31706 5.36767 5.54685 5.58820 5.75238 5.89422 6.36717 6.37610 6.52879 6.95926 7.01901 7.50912 8.97178 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023566 B = 0.007318 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.866316 B = 3825.513788 C = 4679.899358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C 0.225 3.775 4 H -0.037 1.037 5 C -0.507 4.507 6 H 0.051 0.949 7 C 0.008 3.992 8 N -0.922 5.922 9 Si 0.955 3.045 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.280 1.280 13 N -0.674 5.674 14 C 0.056 3.944 15 C 0.156 3.844 16 C -0.123 4.123 17 O -0.385 6.385 18 C 0.026 3.974 19 C -0.199 4.199 20 C -0.172 4.172 21 C -0.150 4.150 22 H 0.058 0.942 23 H 0.035 0.965 24 H 0.054 0.946 25 H 0.036 0.964 26 H 0.068 0.932 27 H 0.260 0.740 28 H 0.328 0.672 29 H 0.057 0.943 30 H 0.010 0.990 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.024 0.976 36 H 0.053 0.947 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.470 10.008 -9.289 15.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.117 3.883 4 H -0.019 1.019 5 C -0.546 4.546 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.563 5.563 9 Si 0.782 3.218 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.206 1.206 13 N -0.306 5.306 14 C -0.074 4.074 15 C 0.117 3.883 16 C -0.180 4.180 17 O -0.304 6.304 18 C -0.070 4.070 19 C -0.218 4.218 20 C -0.209 4.209 21 C -0.187 4.187 22 H 0.077 0.923 23 H 0.054 0.946 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.147 0.853 29 H 0.076 0.924 30 H 0.028 0.972 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.817 9.824 -9.538 14.877 hybrid contribution 0.111 -0.043 1.567 1.572 sum -5.706 9.781 -7.971 13.848 Atomic orbital electron populations 1.21733 0.96422 1.01108 1.00249 1.21586 0.94119 0.99053 1.01164 1.18934 0.94122 0.90557 0.84693 1.01947 1.21496 0.92675 1.36175 1.04261 0.93075 1.25696 1.02351 0.95382 0.95567 1.70016 1.36214 1.39974 1.10047 0.85542 0.80778 0.77705 0.77820 1.19355 1.20804 1.20620 1.60473 1.36339 1.02809 1.30986 1.22279 0.99225 0.89940 0.95996 1.20920 0.85077 0.89754 0.92554 1.21647 0.95835 1.02533 0.97986 1.87918 1.14982 1.77689 1.49839 1.22791 0.88759 1.00402 0.95025 1.22774 1.07223 0.92906 0.98921 1.23194 0.92615 1.01494 1.03594 1.22889 0.98820 1.01082 0.95934 0.92304 0.94628 0.92677 0.94524 0.91367 0.93124 0.85341 0.92430 0.97164 0.91346 0.92445 0.91348 0.88289 0.95713 0.92823 0.88335 0.87789 0.87898 0.88569 0.87442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.37 9.63 71.98 0.69 -4.68 16 2 C -0.12 -5.87 5.36 30.59 0.16 -5.70 16 3 C 0.23 11.61 2.03 44.17 0.09 11.70 16 4 H -0.04 -2.13 7.86 -2.39 -0.02 -2.15 16 5 C -0.51 -28.72 8.54 25.60 0.22 -28.50 16 6 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.44 5.29 84.65 0.45 0.89 16 8 N -0.92 -53.87 11.29 21.45 0.24 -53.63 16 9 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 N -0.67 -29.40 5.52 -495.46 -2.73 -32.13 16 14 C 0.06 2.18 4.10 86.30 0.35 2.53 16 15 C 0.16 4.86 0.71 -10.79 -0.01 4.85 16 16 C -0.12 -3.77 7.29 71.98 0.52 -3.24 16 17 O -0.39 -11.81 9.67 -148.98 -1.44 -13.25 16 18 C 0.03 0.67 10.34 113.37 1.17 1.84 16 19 C -0.20 -5.09 3.78 -10.80 -0.04 -5.13 16 20 C -0.17 -3.72 9.57 30.59 0.29 -3.43 16 21 C -0.15 -3.04 9.80 30.59 0.30 -2.74 16 22 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.05 1.93 6.63 -2.39 -0.02 1.91 16 25 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.07 3.75 5.95 -2.38 -0.01 3.73 16 27 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 28 H 0.33 13.44 6.07 -89.70 -0.54 12.89 16 29 H 0.06 2.50 7.92 -2.39 -0.02 2.48 16 30 H 0.01 0.41 6.65 -2.39 -0.02 0.39 16 31 H 0.07 2.07 6.97 -2.39 -0.02 2.06 16 32 H 0.06 2.02 7.62 -2.39 -0.02 2.00 16 33 H 0.07 1.78 7.07 -2.39 -0.02 1.76 16 34 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.02 0.69 6.55 -2.38 -0.02 0.68 16 36 H 0.05 1.20 6.97 -2.39 -0.02 1.18 16 37 H 0.10 2.53 8.04 -2.38 -0.02 2.51 16 38 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.10 2.25 5.85 -2.39 -0.01 2.23 16 40 H 0.10 1.99 7.60 -2.39 -0.02 1.97 16 41 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -61.47 316.48 2.75 -58.72 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.45 Total: 25.16 kcal Atomic # 6 Polarization: -35.81 SS G_CDS: 4.21 Total: -31.60 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -2.49 Total: -85.76 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -1.44 Total: -13.25 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -61.47 2.75 -58.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308993661.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.876 kcal (2) G-P(sol) polarization free energy of solvation -61.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds