Wall clock time and date at job start Sun Mar 29 2020 23:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47286 * 2 1 4 4 H 1.09000 * 109.46962 * 54.86360 * 3 2 1 5 5 C 1.50701 * 109.46788 * 174.85606 * 3 2 1 6 6 H 1.07999 * 120.00160 * 120.00574 * 5 3 2 7 7 C 1.37875 * 120.00463 * 299.99685 * 5 3 2 8 8 N 1.31521 * 119.99826 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00457 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46712 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47269 * 120.00095 * 9 7 5 12 12 H 1.48505 * 109.47002 * 240.00407 * 9 7 5 13 13 N 1.46897 * 109.47396 * 294.85530 * 3 2 1 14 14 C 1.46901 * 111.00020 * 154.15774 * 13 3 2 15 15 C 1.53002 * 109.46887 * 185.22650 * 14 13 3 16 16 C 1.52991 * 109.47188 * 60.00192 * 15 14 13 17 17 O 1.42899 * 109.46913 * 299.99955 * 15 14 13 18 18 C 1.42901 * 114.00326 * 300.00140 * 17 15 14 19 19 C 1.53002 * 109.46695 * 180.02562 * 15 14 13 20 20 C 1.52999 * 117.49768 * 253.74572 * 19 15 14 21 21 C 1.53005 * 117.49456 * 185.08526 * 19 15 14 22 22 H 1.09005 * 109.47256 * 295.48918 * 1 2 3 23 23 H 1.09001 * 109.46921 * 55.49015 * 1 2 3 24 24 H 1.08994 * 109.47424 * 175.48811 * 1 2 3 25 25 H 1.09000 * 109.47007 * 239.99802 * 2 1 3 26 26 H 1.09003 * 109.46996 * 120.00496 * 2 1 3 27 27 H 0.96998 * 120.00012 * 179.97438 * 8 7 5 28 28 H 1.00895 * 111.00514 * 278.11911 * 13 3 2 29 29 H 1.09001 * 109.46995 * 305.22931 * 14 13 3 30 30 H 1.08995 * 109.46612 * 65.22609 * 14 13 3 31 31 H 1.09008 * 109.47645 * 59.99833 * 16 15 14 32 32 H 1.09000 * 109.47478 * 179.97438 * 16 15 14 33 33 H 1.09002 * 109.47452 * 299.99703 * 16 15 14 34 34 H 1.09002 * 109.46713 * 59.99993 * 18 17 15 35 35 H 1.08993 * 109.47323 * 180.02562 * 18 17 15 36 36 H 1.09004 * 109.47242 * 300.00282 * 18 17 15 37 37 H 1.09002 * 115.55256 * 39.41391 * 19 15 14 38 38 H 1.09001 * 117.49855 * 0.02562 * 20 19 15 39 39 H 1.09000 * 117.49961 * 145.02246 * 20 19 15 40 40 H 1.08998 * 117.49526 * 214.97929 * 21 19 15 41 41 H 1.08994 * 117.50301 * 0.02562 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6035 1.9822 0.8404 5 6 3.5416 1.4442 0.1274 6 1 4.1488 1.8882 -0.6476 7 6 4.1404 0.8793 1.2334 8 7 3.4011 0.3384 2.1771 9 14 6.0017 0.8821 1.3916 10 1 6.5982 1.5471 0.2054 11 1 6.3929 1.6186 2.6203 12 1 6.4935 -0.5166 1.4751 13 7 1.6545 2.0982 -1.2566 14 6 1.5559 3.5535 -1.0824 15 6 1.0280 4.1869 -2.3712 16 6 -0.3553 3.6166 -2.6903 17 8 1.9230 3.8954 -3.4464 18 6 3.2500 4.3871 -3.2477 19 6 0.9259 5.7027 -2.1899 20 6 -0.4723 6.3021 -2.0273 21 6 0.3033 6.5102 -3.3306 22 1 -0.3634 0.4423 0.9277 23 1 -0.3633 0.5822 -0.8468 24 1 -0.3634 -1.0244 -0.0808 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8223 -0.0594 2.9550 28 1 2.2978 1.8656 -1.9982 29 1 0.8732 3.7758 -0.2622 30 1 2.5414 3.9597 -0.8550 31 1 -1.0381 3.8389 -1.8702 32 1 -0.7316 4.0681 -3.6083 33 1 -0.2822 2.5368 -2.8197 34 1 3.6721 3.9400 -2.3476 35 1 3.8669 4.1257 -4.1073 36 1 3.2230 5.4711 -3.1365 37 1 1.7398 6.1653 -1.6316 38 1 -1.3194 5.6166 -2.0491 39 1 -0.5782 7.1593 -1.3624 40 1 0.7073 7.5042 -3.5224 41 1 -0.0340 5.9617 -4.2100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308993663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:17 Heat of formation + Delta-G solvation = -29.860432 kcal Electronic energy + Delta-G solvation = -18662.894896 eV Core-core repulsion = 15964.493225 eV Total energy + Delta-G solvation = -2698.401671 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.45443 -36.17815 -35.59614 -32.61072 -31.31624 -29.86490 -26.85897 -25.92342 -25.24292 -22.99323 -22.35325 -21.58295 -19.55616 -18.74764 -16.74672 -16.37070 -15.40020 -15.28553 -14.79177 -14.60217 -13.88852 -13.47219 -13.20051 -12.80419 -12.59352 -12.31630 -11.79577 -11.73355 -11.39453 -11.28532 -11.16870 -11.09890 -10.98815 -10.85663 -10.60680 -10.41786 -10.23724 -10.09566 -9.96497 -9.64742 -9.52969 -9.11326 -8.85651 -8.36955 -7.17331 -5.98740 -4.11923 3.24912 3.33614 3.36355 3.74762 4.33043 4.39100 4.67606 5.01075 5.08877 5.25004 5.27226 5.49269 5.54207 5.67258 5.69655 5.78642 5.90675 5.98384 6.01411 6.11672 6.15670 6.21267 6.30688 6.38502 6.46490 6.55697 6.59222 6.72222 6.79446 7.16959 7.21796 7.47895 7.60481 7.66430 7.79568 8.12760 8.19372 8.36575 8.72030 9.02653 9.55688 11.00862 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024867 B = 0.007075 C = 0.006119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.710889 B = 3956.596372 C = 4575.180893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C 0.214 3.786 4 H 0.030 0.970 5 C -0.543 4.543 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.283 1.283 13 N -0.680 5.680 14 C 0.049 3.951 15 C 0.148 3.852 16 C -0.128 4.128 17 O -0.373 6.373 18 C 0.028 3.972 19 C -0.179 4.179 20 C -0.176 4.176 21 C -0.169 4.169 22 H 0.034 0.966 23 H 0.050 0.950 24 H 0.024 0.976 25 H 0.030 0.970 26 H 0.089 0.911 27 H 0.260 0.740 28 H 0.332 0.668 29 H 0.067 0.933 30 H 0.028 0.972 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.036 0.964 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.339 8.933 -8.011 13.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.048 0.952 5 C -0.582 4.582 6 H 0.070 0.930 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.209 1.209 13 N -0.310 5.310 14 C -0.081 4.081 15 C 0.108 3.892 16 C -0.185 4.185 17 O -0.292 6.292 18 C -0.069 4.069 19 C -0.198 4.198 20 C -0.213 4.213 21 C -0.206 4.206 22 H 0.053 0.947 23 H 0.069 0.931 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.107 0.893 27 H 0.070 0.930 28 H 0.149 0.851 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.064 8.623 -7.889 13.167 hybrid contribution 2.341 0.486 0.622 2.471 sum -3.723 9.108 -7.267 12.232 Atomic orbital electron populations 1.21711 0.99047 0.98442 1.00328 1.21479 0.92096 0.99237 1.01565 1.19140 0.92706 0.91280 0.86219 0.95222 1.21909 0.92882 1.38040 1.05347 0.92969 1.24934 0.97812 0.95056 0.95755 1.69892 1.34641 1.38386 1.09422 0.86628 0.86232 0.77779 0.77879 1.19974 1.21102 1.20916 1.60780 1.55136 1.05176 1.09914 1.22234 0.99151 0.91270 0.95464 1.21077 0.91022 0.89461 0.87597 1.21696 0.93314 1.03051 1.00400 1.87918 1.19836 1.78584 1.42825 1.22688 0.84476 0.97813 1.01926 1.22914 0.97280 0.96118 1.03489 1.23092 0.95106 1.02975 1.00157 1.22840 1.04287 1.00597 0.92900 0.94656 0.93055 0.95728 0.95149 0.89286 0.92974 0.85144 0.91417 0.95346 0.91513 0.93369 0.90174 0.93263 0.90466 0.94587 0.88185 0.87927 0.89209 0.89414 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.85 37.16 0.37 -2.49 16 2 C -0.11 -2.54 5.45 -26.73 -0.15 -2.68 16 3 C 0.21 5.29 1.97 -68.87 -0.14 5.15 16 4 H 0.03 0.81 7.70 -51.93 -0.40 0.41 16 5 C -0.54 -14.59 8.47 -34.44 -0.29 -14.88 16 6 H 0.05 1.40 7.73 -52.49 -0.41 1.00 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -25.04 11.29 55.43 0.63 -24.41 16 9 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.68 -14.24 4.83 -107.95 -0.52 -14.76 16 14 C 0.05 0.93 4.09 -3.82 -0.02 0.91 16 15 C 0.15 2.31 0.72 -90.62 -0.07 2.25 16 16 C -0.13 -1.87 7.35 37.15 0.27 -1.59 16 17 O -0.37 -6.17 9.76 -35.23 -0.34 -6.52 16 18 C 0.03 0.41 10.31 101.05 1.04 1.45 16 19 C -0.18 -2.42 3.99 -90.62 -0.36 -2.78 16 20 C -0.18 -2.03 9.66 -26.69 -0.26 -2.29 16 21 C -0.17 -1.96 9.86 -26.69 -0.26 -2.22 16 22 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.05 1.02 7.64 -51.93 -0.40 0.62 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 2.39 5.95 -51.93 -0.31 2.09 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.33 7.19 7.93 -39.29 -0.31 6.87 16 29 H 0.07 1.30 7.92 -51.93 -0.41 0.89 16 30 H 0.03 0.57 6.51 -51.93 -0.34 0.24 16 31 H 0.07 0.91 6.74 -51.92 -0.35 0.56 16 32 H 0.05 0.63 6.96 -51.93 -0.36 0.27 16 33 H 0.08 1.31 7.60 -51.93 -0.39 0.91 16 34 H 0.05 0.82 6.42 -51.93 -0.33 0.49 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.04 0.48 6.99 -51.93 -0.36 0.12 16 37 H 0.10 1.37 7.90 -51.93 -0.41 0.96 16 38 H 0.10 1.15 5.89 -51.93 -0.31 0.84 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.10 1.14 7.28 -51.93 -0.38 0.76 16 LS Contribution 318.07 15.07 4.79 4.79 Total: -1.00 -27.50 318.07 -7.56 -35.06 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -7.14 Total: 7.15 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 0.05 Total: -17.45 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.10 Total: -39.17 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.34 Total: -6.52 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.50 -7.56 -35.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308993663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.198 kcal (2) G-P(sol) polarization free energy of solvation -27.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds