Wall clock time and date at job start Sun Mar 29 2020 23:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47286 * 2 1 4 4 H 1.09000 * 109.46962 * 54.86360 * 3 2 1 5 5 C 1.50701 * 109.46788 * 174.85606 * 3 2 1 6 6 H 1.07999 * 120.00160 * 120.00574 * 5 3 2 7 7 C 1.37875 * 120.00463 * 299.99685 * 5 3 2 8 8 N 1.31521 * 119.99826 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00457 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46712 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47269 * 120.00095 * 9 7 5 12 12 H 1.48505 * 109.47002 * 240.00407 * 9 7 5 13 13 N 1.46897 * 109.47396 * 294.85530 * 3 2 1 14 14 C 1.46901 * 111.00020 * 154.15774 * 13 3 2 15 15 C 1.53002 * 109.46887 * 185.22650 * 14 13 3 16 16 C 1.52991 * 109.47188 * 60.00192 * 15 14 13 17 17 O 1.42899 * 109.46913 * 299.99955 * 15 14 13 18 18 C 1.42901 * 114.00326 * 300.00140 * 17 15 14 19 19 C 1.53002 * 109.46695 * 180.02562 * 15 14 13 20 20 C 1.52999 * 117.49768 * 253.74572 * 19 15 14 21 21 C 1.53005 * 117.49456 * 185.08526 * 19 15 14 22 22 H 1.09005 * 109.47256 * 295.48918 * 1 2 3 23 23 H 1.09001 * 109.46921 * 55.49015 * 1 2 3 24 24 H 1.08994 * 109.47424 * 175.48811 * 1 2 3 25 25 H 1.09000 * 109.47007 * 239.99802 * 2 1 3 26 26 H 1.09003 * 109.46996 * 120.00496 * 2 1 3 27 27 H 0.96998 * 120.00012 * 179.97438 * 8 7 5 28 28 H 1.00895 * 111.00514 * 278.11911 * 13 3 2 29 29 H 1.09001 * 109.46995 * 305.22931 * 14 13 3 30 30 H 1.08995 * 109.46612 * 65.22609 * 14 13 3 31 31 H 1.09008 * 109.47645 * 59.99833 * 16 15 14 32 32 H 1.09000 * 109.47478 * 179.97438 * 16 15 14 33 33 H 1.09002 * 109.47452 * 299.99703 * 16 15 14 34 34 H 1.09002 * 109.46713 * 59.99993 * 18 17 15 35 35 H 1.08993 * 109.47323 * 180.02562 * 18 17 15 36 36 H 1.09004 * 109.47242 * 300.00282 * 18 17 15 37 37 H 1.09002 * 115.55256 * 39.41391 * 19 15 14 38 38 H 1.09001 * 117.49855 * 0.02562 * 20 19 15 39 39 H 1.09000 * 117.49961 * 145.02246 * 20 19 15 40 40 H 1.08998 * 117.49526 * 214.97929 * 21 19 15 41 41 H 1.08994 * 117.50301 * 0.02562 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6035 1.9822 0.8404 5 6 3.5416 1.4442 0.1274 6 1 4.1488 1.8882 -0.6476 7 6 4.1404 0.8793 1.2334 8 7 3.4011 0.3384 2.1771 9 14 6.0017 0.8821 1.3916 10 1 6.5982 1.5471 0.2054 11 1 6.3929 1.6186 2.6203 12 1 6.4935 -0.5166 1.4751 13 7 1.6545 2.0982 -1.2566 14 6 1.5559 3.5535 -1.0824 15 6 1.0280 4.1869 -2.3712 16 6 -0.3553 3.6166 -2.6903 17 8 1.9230 3.8954 -3.4464 18 6 3.2500 4.3871 -3.2477 19 6 0.9259 5.7027 -2.1899 20 6 -0.4723 6.3021 -2.0273 21 6 0.3033 6.5102 -3.3306 22 1 -0.3634 0.4423 0.9277 23 1 -0.3633 0.5822 -0.8468 24 1 -0.3634 -1.0244 -0.0808 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8223 -0.0594 2.9550 28 1 2.2978 1.8656 -1.9982 29 1 0.8732 3.7758 -0.2622 30 1 2.5414 3.9597 -0.8550 31 1 -1.0381 3.8389 -1.8702 32 1 -0.7316 4.0681 -3.6083 33 1 -0.2822 2.5368 -2.8197 34 1 3.6721 3.9400 -2.3476 35 1 3.8669 4.1257 -4.1073 36 1 3.2230 5.4711 -3.1365 37 1 1.7398 6.1653 -1.6316 38 1 -1.3194 5.6166 -2.0491 39 1 -0.5782 7.1593 -1.3624 40 1 0.7073 7.5042 -3.5224 41 1 -0.0340 5.9617 -4.2100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308993663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:17 Heat of formation + Delta-G solvation = -45.962851 kcal Electronic energy + Delta-G solvation = -18663.593149 eV Core-core repulsion = 15964.493225 eV Total energy + Delta-G solvation = -2699.099924 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.67786 -37.76224 -36.94680 -34.44483 -33.10904 -31.30670 -28.58196 -27.33562 -26.66309 -24.74594 -23.39494 -22.91566 -21.43830 -20.02939 -18.71874 -17.57021 -16.86541 -16.68413 -16.50565 -15.86589 -15.54307 -15.12745 -14.65454 -14.43174 -13.98986 -13.58930 -13.41352 -13.22450 -13.06615 -13.00267 -12.75155 -12.60977 -12.39565 -12.38078 -12.05581 -12.00466 -11.60640 -11.52728 -11.41546 -11.22070 -11.06474 -10.95844 -10.48541 -10.26434 -9.00380 -8.06146 -6.29009 1.34381 1.37221 1.46922 2.37979 2.68748 3.12471 3.21999 3.48559 3.95670 4.05242 4.08164 4.16033 4.29068 4.49594 4.57018 4.59162 4.66331 4.74381 4.78737 4.79628 4.89163 4.94364 4.97719 5.02152 5.07192 5.08755 5.19051 5.28935 5.32921 5.43697 5.51962 5.56800 5.64168 5.78194 6.10184 6.21042 6.37407 6.41755 6.81775 7.01690 7.42493 8.89755 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024867 B = 0.007075 C = 0.006119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.710889 B = 3956.596372 C = 4575.180893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.101 4.101 3 C 0.222 3.778 4 H -0.002 1.002 5 C -0.557 4.557 6 H 0.046 0.954 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.949 3.051 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.279 1.279 13 N -0.667 5.667 14 C 0.053 3.947 15 C 0.154 3.846 16 C -0.124 4.124 17 O -0.385 6.385 18 C 0.029 3.971 19 C -0.200 4.200 20 C -0.167 4.167 21 C -0.154 4.154 22 H 0.030 0.970 23 H 0.060 0.940 24 H 0.045 0.955 25 H 0.026 0.974 26 H 0.060 0.940 27 H 0.262 0.738 28 H 0.328 0.672 29 H 0.059 0.941 30 H 0.009 0.991 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.023 0.977 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.745 9.980 -9.174 14.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.140 4.140 3 C 0.113 3.887 4 H 0.016 0.984 5 C -0.596 4.596 6 H 0.064 0.936 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.775 3.225 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.204 1.204 13 N -0.296 5.296 14 C -0.077 4.077 15 C 0.115 3.885 16 C -0.181 4.181 17 O -0.304 6.304 18 C -0.067 4.067 19 C -0.219 4.219 20 C -0.204 4.204 21 C -0.191 4.191 22 H 0.049 0.951 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.044 0.956 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.145 0.855 29 H 0.078 0.922 30 H 0.028 0.972 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.041 0.959 35 H 0.113 0.887 36 H 0.070 0.930 37 H 0.112 0.888 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.477 9.679 -9.063 14.757 hybrid contribution 2.463 0.184 0.985 2.659 sum -4.014 9.863 -8.078 13.366 Atomic orbital electron populations 1.21568 0.96296 0.99955 1.00463 1.21343 0.94545 0.98304 0.99835 1.18926 0.91502 0.91615 0.86658 0.98428 1.22183 0.94167 1.37940 1.05337 0.93567 1.25655 1.02016 0.94802 0.95525 1.70014 1.36268 1.38892 1.09805 0.85658 0.81183 0.77846 0.77852 1.19568 1.20721 1.20433 1.60731 1.54258 1.06564 1.08023 1.22269 0.98142 0.89859 0.97459 1.20990 0.91087 0.90933 0.85523 1.21676 0.92850 1.01849 1.01682 1.87899 1.20477 1.79095 1.42943 1.22728 0.83954 0.98556 1.01473 1.22766 0.98740 0.94563 1.05877 1.23201 0.93794 1.03063 1.00318 1.22905 1.03028 1.00745 0.92455 0.95119 0.92091 0.93639 0.95554 0.92184 0.92883 0.85514 0.92241 0.97246 0.90601 0.91522 0.92028 0.95874 0.88714 0.93035 0.88809 0.87461 0.87843 0.87811 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 9.85 71.98 0.71 -4.41 16 2 C -0.10 -4.97 5.45 30.59 0.17 -4.80 16 3 C 0.22 11.22 1.97 44.17 0.09 11.31 16 4 H 0.00 -0.13 7.70 -2.39 -0.02 -0.15 16 5 C -0.56 -30.63 8.47 25.60 0.22 -30.41 16 6 H 0.05 2.54 7.73 -2.91 -0.02 2.52 16 7 C 0.02 1.11 5.29 84.65 0.45 1.55 16 8 N -0.91 -52.50 11.29 21.45 0.24 -52.26 16 9 Si 0.95 43.79 29.54 68.60 2.03 45.81 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 13 N -0.67 -28.35 4.83 -495.45 -2.39 -30.75 16 14 C 0.05 2.02 4.09 86.30 0.35 2.38 16 15 C 0.15 4.69 0.72 -10.80 -0.01 4.68 16 16 C -0.12 -3.42 7.35 71.98 0.53 -2.89 16 17 O -0.38 -12.37 9.76 -148.98 -1.45 -13.82 16 18 C 0.03 0.85 10.31 113.37 1.17 2.02 16 19 C -0.20 -5.09 3.99 -10.79 -0.04 -5.13 16 20 C -0.17 -3.39 9.66 30.62 0.30 -3.10 16 21 C -0.15 -3.12 9.86 30.62 0.30 -2.82 16 22 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 23 H 0.06 2.35 7.64 -2.39 -0.02 2.33 16 24 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 25 H 0.03 1.26 8.14 -2.39 -0.02 1.25 16 26 H 0.06 3.30 5.95 -2.39 -0.01 3.29 16 27 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 28 H 0.33 14.44 7.93 -89.70 -0.71 13.73 16 29 H 0.06 2.34 7.92 -2.39 -0.02 2.32 16 30 H 0.01 0.39 6.51 -2.39 -0.02 0.38 16 31 H 0.08 1.94 6.74 -2.38 -0.02 1.92 16 32 H 0.07 1.59 6.96 -2.39 -0.02 1.58 16 33 H 0.06 1.94 7.60 -2.39 -0.02 1.92 16 34 H 0.02 0.78 6.42 -2.39 -0.02 0.76 16 35 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.05 1.32 6.99 -2.39 -0.02 1.30 16 37 H 0.09 2.49 7.90 -2.39 -0.02 2.47 16 38 H 0.11 2.09 5.89 -2.39 -0.01 2.08 16 39 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.10 1.98 7.28 -2.39 -0.02 1.96 16 Total: -1.00 -59.05 318.07 2.93 -56.12 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.28 Total: 26.52 kcal Atomic # 6 Polarization: -35.85 SS G_CDS: 4.23 Total: -31.62 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -2.15 Total: -83.00 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -1.45 Total: -13.82 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -59.05 2.93 -56.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308993663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.159 kcal (2) G-P(sol) polarization free energy of solvation -59.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds