Wall clock time and date at job start Sun Mar 29 2020 23:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46970 * 2 1 4 4 H 1.09001 * 109.47111 * 305.63487 * 3 2 1 5 5 C 1.50695 * 109.46938 * 185.63830 * 3 2 1 6 6 H 1.08005 * 119.99990 * 239.99631 * 5 3 2 7 7 C 1.37877 * 120.00256 * 60.00122 * 5 3 2 8 8 N 1.31523 * 119.99827 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00345 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46981 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47004 * 120.00004 * 9 7 5 12 12 H 1.48501 * 109.47268 * 239.99631 * 9 7 5 13 13 N 1.46899 * 109.47308 * 65.63885 * 3 2 1 14 14 C 1.46897 * 111.00040 * 201.63171 * 13 3 2 15 15 C 1.52997 * 109.47273 * 185.82897 * 14 13 3 16 16 C 1.53001 * 109.47395 * 305.00355 * 15 14 13 17 17 O 1.42901 * 109.47121 * 64.99951 * 15 14 13 18 18 C 1.42904 * 113.99501 * 60.00021 * 17 15 14 19 19 C 1.53002 * 109.47378 * 185.00020 * 15 14 13 20 20 C 1.53003 * 117.49985 * 180.02562 * 19 15 14 21 21 C 1.52999 * 117.49552 * 111.37942 * 19 15 14 22 22 H 1.09002 * 109.46770 * 174.17835 * 1 2 3 23 23 H 1.09001 * 109.47299 * 294.17741 * 1 2 3 24 24 H 1.08998 * 109.47282 * 54.17932 * 1 2 3 25 25 H 1.09000 * 109.47634 * 239.99728 * 2 1 3 26 26 H 1.09004 * 109.47242 * 119.99590 * 2 1 3 27 27 H 0.96996 * 119.99846 * 180.02562 * 8 7 5 28 28 H 1.00903 * 111.00132 * 325.58672 * 13 3 2 29 29 H 1.09003 * 109.47127 * 65.83219 * 14 13 3 30 30 H 1.08993 * 109.47206 * 305.83320 * 14 13 3 31 31 H 1.09003 * 109.46800 * 299.99873 * 16 15 14 32 32 H 1.09005 * 109.47210 * 59.99446 * 16 15 14 33 33 H 1.08996 * 109.47288 * 179.97438 * 16 15 14 34 34 H 1.09008 * 109.46562 * 180.02562 * 18 17 15 35 35 H 1.08995 * 109.47156 * 299.99624 * 18 17 15 36 36 H 1.08999 * 109.47299 * 60.00580 * 18 17 15 37 37 H 1.08992 * 115.55926 * 325.69329 * 19 15 14 38 38 H 1.08997 * 117.49843 * 145.01828 * 20 19 15 39 39 H 1.09000 * 117.49936 * 359.97438 * 20 19 15 40 40 H 1.08992 * 117.50217 * 0.02562 * 21 19 15 41 41 H 1.09002 * 117.49810 * 214.97967 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9846 -0.8352 5 6 3.5404 1.4448 -0.1396 6 1 4.1539 1.8866 0.6318 7 6 4.1302 0.8830 -1.2521 8 7 3.3832 0.3447 -2.1912 9 14 5.9901 0.8865 -1.4255 10 1 6.5964 1.5471 -0.2417 11 1 6.4813 -0.5119 -1.5170 12 1 6.3713 1.6265 -2.6553 13 7 1.6646 2.0946 1.2616 14 6 1.6617 3.5566 1.1181 15 6 1.4099 4.2025 2.4820 16 6 0.1160 3.6455 3.0791 17 8 2.5020 3.9106 3.3562 18 6 3.7645 4.3902 2.8890 19 6 1.2828 5.7178 2.3131 20 6 1.0277 6.5500 3.5714 21 6 -0.0937 6.3421 2.5508 22 1 -0.3633 -1.0224 -0.1042 23 1 -0.3634 0.4209 0.9375 24 1 -0.3634 0.6014 -0.8333 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.7981 -0.0508 -2.9737 28 1 0.7700 1.7617 1.5886 29 1 0.8739 3.8521 0.4252 30 1 2.6267 3.8857 0.7328 31 1 -0.7171 3.8682 2.4123 32 1 0.2065 2.5660 3.1994 33 1 -0.0631 4.1054 4.0509 34 1 4.5411 4.1284 3.6078 35 1 3.9927 3.9339 1.9259 36 1 3.7229 5.4736 2.7772 37 1 1.9081 6.1585 1.5367 38 1 1.4849 7.5381 3.6226 39 1 0.9500 6.0179 4.5195 40 1 -0.9085 5.6734 2.8279 41 1 -0.3740 7.1936 1.9307 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308993666.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:19 Heat of formation + Delta-G solvation = -23.831367 kcal Electronic energy + Delta-G solvation = -18683.762795 eV Core-core repulsion = 15985.622563 eV Total energy + Delta-G solvation = -2698.140231 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.41939 -36.19665 -35.61334 -32.69835 -31.41634 -29.70420 -26.80338 -25.90402 -25.50849 -23.04969 -22.34829 -21.61557 -19.50997 -18.75818 -16.57170 -16.14064 -15.68332 -15.21787 -14.63280 -14.50485 -13.86587 -13.77316 -13.32103 -12.77303 -12.44346 -12.21714 -12.13995 -12.01280 -11.49560 -11.40974 -11.15559 -11.07952 -10.98566 -10.84239 -10.58443 -10.31758 -10.19478 -9.99432 -9.89760 -9.71115 -9.60095 -9.00443 -8.80280 -8.32319 -7.11033 -5.94448 -3.98176 3.31682 3.39856 3.44681 3.77857 4.38754 4.46545 4.68404 4.99795 5.06950 5.22666 5.33504 5.47135 5.55555 5.65694 5.69197 5.86081 5.87954 5.96956 6.06211 6.10700 6.17167 6.19128 6.19674 6.21791 6.27456 6.36372 6.44967 6.53805 6.71101 6.88318 7.12762 7.24217 7.54659 7.76233 7.83486 7.95889 8.36125 8.43596 8.82979 9.10479 9.66689 11.10992 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.007347 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.537502 B = 3810.054246 C = 4542.575372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.218 3.782 4 H -0.003 1.003 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.287 1.287 13 N -0.676 5.676 14 C 0.049 3.951 15 C 0.150 3.850 16 C -0.141 4.141 17 O -0.363 6.363 18 C 0.031 3.969 19 C -0.179 4.179 20 C -0.168 4.168 21 C -0.179 4.179 22 H 0.037 0.963 23 H 0.035 0.965 24 H 0.041 0.959 25 H 0.098 0.902 26 H 0.041 0.959 27 H 0.258 0.742 28 H 0.316 0.684 29 H 0.020 0.980 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.030 0.970 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.811 8.887 8.052 13.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C 0.111 3.889 4 H 0.015 0.985 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.308 5.308 14 C -0.082 4.082 15 C 0.110 3.890 16 C -0.198 4.198 17 O -0.281 6.281 18 C -0.065 4.065 19 C -0.198 4.198 20 C -0.205 4.205 21 C -0.216 4.216 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.117 0.883 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.134 0.866 29 H 0.038 0.962 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.120 0.880 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.168 8.660 8.299 13.060 hybrid contribution 0.344 0.315 -1.117 1.210 sum -4.823 8.975 7.183 12.466 Atomic orbital electron populations 1.21877 0.99689 0.99660 0.99464 1.21730 0.91167 1.00310 1.03012 1.19155 0.95445 0.90047 0.84296 0.98498 1.21249 0.91330 1.36245 1.03983 0.92053 1.24963 0.97976 0.95755 0.95929 1.69888 1.34504 1.39696 1.09612 0.86531 0.85992 0.77649 0.77775 1.19785 1.21122 1.21320 1.60618 1.33750 1.02494 1.33930 1.22313 1.01093 0.90928 0.93850 1.20940 0.87873 0.89309 0.90890 1.21832 0.94951 1.02515 1.00485 1.87899 1.15072 1.79335 1.45805 1.22665 0.85682 0.97086 1.01074 1.22945 1.00262 0.95927 1.00643 1.22819 1.02757 1.00564 0.94321 1.23093 0.92324 1.02986 1.03231 0.94423 0.94625 0.93984 0.88346 0.93997 0.93207 0.86560 0.96184 0.90299 0.91558 0.90880 0.92441 0.90737 0.92459 0.95145 0.87993 0.89326 0.88536 0.88115 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.62 37.16 0.36 -2.57 16 2 C -0.12 -2.95 5.38 -26.73 -0.14 -3.09 16 3 C 0.22 5.45 2.02 -68.87 -0.14 5.31 16 4 H 0.00 -0.07 7.91 -51.93 -0.41 -0.48 16 5 C -0.49 -13.49 8.36 -34.44 -0.29 -13.78 16 6 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -25.63 11.29 55.43 0.63 -25.00 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.68 -14.47 6.04 -107.96 -0.65 -15.12 16 14 C 0.05 0.93 4.25 -3.83 -0.02 0.91 16 15 C 0.15 2.40 0.72 -90.62 -0.06 2.33 16 16 C -0.14 -1.99 6.98 37.16 0.26 -1.73 16 17 O -0.36 -6.44 10.20 -35.23 -0.36 -6.80 16 18 C 0.03 0.51 10.32 101.05 1.04 1.56 16 19 C -0.18 -2.44 3.95 -90.62 -0.36 -2.80 16 20 C -0.17 -1.96 9.80 -26.70 -0.26 -2.22 16 21 C -0.18 -2.04 9.57 -26.71 -0.26 -2.29 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.03 0.62 6.66 -51.93 -0.35 0.28 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.10 2.63 5.94 -51.93 -0.31 2.32 16 26 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.32 6.22 4.81 -39.29 -0.19 6.03 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 1.66 5.91 -51.93 -0.31 1.35 16 31 H 0.07 0.84 6.98 -51.93 -0.36 0.48 16 32 H 0.07 1.11 6.65 -51.93 -0.35 0.77 16 33 H 0.06 0.74 7.08 -51.93 -0.37 0.37 16 34 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 35 H 0.06 1.07 6.31 -51.93 -0.33 0.74 16 36 H 0.03 0.43 7.10 -51.93 -0.37 0.06 16 37 H 0.10 1.41 8.05 -51.93 -0.42 1.00 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.10 1.16 7.61 -51.93 -0.40 0.76 16 40 H 0.10 1.09 5.85 -51.93 -0.30 0.79 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 314.62 15.07 4.74 4.74 Total: -1.00 -28.76 314.62 -7.58 -36.34 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.95 Total: 6.27 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 0.04 Total: -16.97 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: -0.03 Total: -40.12 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.36 Total: -6.80 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.76 -7.58 -36.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308993666.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.508 kcal (2) G-P(sol) polarization free energy of solvation -28.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds