Wall clock time and date at job start Sun Mar 29 2020 23:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46970 * 2 1 4 4 H 1.09001 * 109.47111 * 305.63487 * 3 2 1 5 5 C 1.50695 * 109.46938 * 185.63830 * 3 2 1 6 6 H 1.08005 * 119.99990 * 239.99631 * 5 3 2 7 7 C 1.37877 * 120.00256 * 60.00122 * 5 3 2 8 8 N 1.31523 * 119.99827 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00345 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46981 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47004 * 120.00004 * 9 7 5 12 12 H 1.48501 * 109.47268 * 239.99631 * 9 7 5 13 13 N 1.46899 * 109.47308 * 65.63885 * 3 2 1 14 14 C 1.46897 * 111.00040 * 201.63171 * 13 3 2 15 15 C 1.52997 * 109.47273 * 185.82897 * 14 13 3 16 16 C 1.53001 * 109.47395 * 305.00355 * 15 14 13 17 17 O 1.42901 * 109.47121 * 64.99951 * 15 14 13 18 18 C 1.42904 * 113.99501 * 60.00021 * 17 15 14 19 19 C 1.53002 * 109.47378 * 185.00020 * 15 14 13 20 20 C 1.53003 * 117.49985 * 180.02562 * 19 15 14 21 21 C 1.52999 * 117.49552 * 111.37942 * 19 15 14 22 22 H 1.09002 * 109.46770 * 174.17835 * 1 2 3 23 23 H 1.09001 * 109.47299 * 294.17741 * 1 2 3 24 24 H 1.08998 * 109.47282 * 54.17932 * 1 2 3 25 25 H 1.09000 * 109.47634 * 239.99728 * 2 1 3 26 26 H 1.09004 * 109.47242 * 119.99590 * 2 1 3 27 27 H 0.96996 * 119.99846 * 180.02562 * 8 7 5 28 28 H 1.00903 * 111.00132 * 325.58672 * 13 3 2 29 29 H 1.09003 * 109.47127 * 65.83219 * 14 13 3 30 30 H 1.08993 * 109.47206 * 305.83320 * 14 13 3 31 31 H 1.09003 * 109.46800 * 299.99873 * 16 15 14 32 32 H 1.09005 * 109.47210 * 59.99446 * 16 15 14 33 33 H 1.08996 * 109.47288 * 179.97438 * 16 15 14 34 34 H 1.09008 * 109.46562 * 180.02562 * 18 17 15 35 35 H 1.08995 * 109.47156 * 299.99624 * 18 17 15 36 36 H 1.08999 * 109.47299 * 60.00580 * 18 17 15 37 37 H 1.08992 * 115.55926 * 325.69329 * 19 15 14 38 38 H 1.08997 * 117.49843 * 145.01828 * 20 19 15 39 39 H 1.09000 * 117.49936 * 359.97438 * 20 19 15 40 40 H 1.08992 * 117.50217 * 0.02562 * 21 19 15 41 41 H 1.09002 * 117.49810 * 214.97967 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9846 -0.8352 5 6 3.5404 1.4448 -0.1396 6 1 4.1539 1.8866 0.6318 7 6 4.1302 0.8830 -1.2521 8 7 3.3832 0.3447 -2.1912 9 14 5.9901 0.8865 -1.4255 10 1 6.5964 1.5471 -0.2417 11 1 6.4813 -0.5119 -1.5170 12 1 6.3713 1.6265 -2.6553 13 7 1.6646 2.0946 1.2616 14 6 1.6617 3.5566 1.1181 15 6 1.4099 4.2025 2.4820 16 6 0.1160 3.6455 3.0791 17 8 2.5020 3.9106 3.3562 18 6 3.7645 4.3902 2.8890 19 6 1.2828 5.7178 2.3131 20 6 1.0277 6.5500 3.5714 21 6 -0.0937 6.3421 2.5508 22 1 -0.3633 -1.0224 -0.1042 23 1 -0.3634 0.4209 0.9375 24 1 -0.3634 0.6014 -0.8333 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.7981 -0.0508 -2.9737 28 1 0.7700 1.7617 1.5886 29 1 0.8739 3.8521 0.4252 30 1 2.6267 3.8857 0.7328 31 1 -0.7171 3.8682 2.4123 32 1 0.2065 2.5660 3.1994 33 1 -0.0631 4.1054 4.0509 34 1 4.5411 4.1284 3.6078 35 1 3.9927 3.9339 1.9259 36 1 3.7229 5.4736 2.7772 37 1 1.9081 6.1585 1.5367 38 1 1.4849 7.5381 3.6226 39 1 0.9500 6.0179 4.5195 40 1 -0.9085 5.6734 2.8279 41 1 -0.3740 7.1936 1.9307 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308993666.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:19 Heat of formation + Delta-G solvation = -41.773861 kcal Electronic energy + Delta-G solvation = -18684.540840 eV Core-core repulsion = 15985.622563 eV Total energy + Delta-G solvation = -2698.918276 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.66361 -37.88296 -36.88065 -34.54755 -33.20105 -31.13565 -28.57717 -27.47280 -26.83414 -24.80877 -23.37405 -22.93106 -21.43727 -19.99886 -18.41561 -17.53435 -17.19312 -16.74111 -16.32309 -15.82841 -15.55420 -15.35314 -14.65934 -14.49992 -13.87723 -13.76272 -13.51772 -13.39686 -13.10331 -12.89802 -12.76728 -12.54372 -12.48690 -12.42739 -12.06263 -11.97134 -11.64749 -11.51323 -11.40378 -11.21164 -10.99846 -10.99090 -10.44279 -10.18981 -8.92774 -8.07308 -6.18777 1.37559 1.40014 1.51568 2.42562 2.72924 3.17277 3.22599 3.49798 3.91697 3.96235 4.12263 4.15866 4.28956 4.42307 4.51505 4.57454 4.61052 4.65667 4.68332 4.75656 4.79083 4.87538 4.94630 4.98571 5.05588 5.10191 5.12476 5.23018 5.24722 5.31745 5.36743 5.46192 5.60250 5.75477 5.90228 6.37238 6.43361 6.54489 6.95492 7.04510 7.50161 8.96181 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.007347 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.537502 B = 3810.054246 C = 4542.575372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C 0.225 3.775 4 H -0.036 1.036 5 C -0.506 4.506 6 H 0.048 0.952 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.281 1.281 13 N -0.676 5.676 14 C 0.052 3.948 15 C 0.153 3.847 16 C -0.138 4.138 17 O -0.379 6.379 18 C 0.035 3.965 19 C -0.202 4.202 20 C -0.156 4.156 21 C -0.165 4.165 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.036 0.964 25 H 0.067 0.933 26 H 0.035 0.965 27 H 0.260 0.740 28 H 0.328 0.672 29 H 0.020 0.980 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.024 0.976 36 H 0.050 0.950 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.622 9.872 9.321 15.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 C 0.116 3.884 4 H -0.019 1.019 5 C -0.545 4.545 6 H 0.066 0.934 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.207 1.207 13 N -0.308 5.308 14 C -0.078 4.078 15 C 0.113 3.887 16 C -0.195 4.195 17 O -0.298 6.298 18 C -0.061 4.061 19 C -0.221 4.221 20 C -0.192 4.192 21 C -0.201 4.201 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.055 0.945 25 H 0.085 0.915 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.147 0.853 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.114 0.886 40 H 0.128 0.872 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.991 9.652 9.581 14.861 hybrid contribution 0.590 0.037 -1.509 1.621 sum -5.401 9.688 8.071 13.718 Atomic orbital electron populations 1.21741 0.96194 1.01155 1.00484 1.21560 0.94327 0.98884 1.01053 1.18933 0.94058 0.90722 0.84652 1.01899 1.21473 0.92820 1.36310 1.03896 0.93409 1.25672 1.02157 0.95437 0.95650 1.70011 1.36073 1.40088 1.09926 0.85589 0.81005 0.77767 0.77780 1.19528 1.20558 1.20712 1.60516 1.34582 1.03889 1.31857 1.22317 0.99623 0.89617 0.96281 1.20949 0.88166 0.90923 0.88623 1.21851 0.94293 1.01665 1.01712 1.87870 1.15738 1.79911 1.46257 1.22645 0.85756 0.98044 0.99695 1.22779 1.02697 0.94322 1.02302 1.22885 1.02395 1.00576 0.93391 1.23214 0.91392 1.02964 1.02576 0.92379 0.92339 0.94477 0.91456 0.94659 0.93114 0.85263 0.96207 0.92997 0.89903 0.92176 0.90662 0.89485 0.95694 0.93133 0.88833 0.87851 0.88579 0.87225 0.87771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.26 9.62 71.98 0.69 -4.57 16 2 C -0.12 -5.78 5.38 30.59 0.16 -5.62 16 3 C 0.22 11.55 2.02 44.17 0.09 11.64 16 4 H -0.04 -2.09 7.91 -2.39 -0.02 -2.11 16 5 C -0.51 -28.80 8.36 25.60 0.21 -28.58 16 6 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 7 C 0.01 0.49 5.29 84.65 0.45 0.94 16 8 N -0.92 -53.79 11.29 21.45 0.24 -53.54 16 9 Si 0.95 44.95 29.54 68.60 2.03 46.97 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 N -0.68 -29.29 6.04 -495.47 -2.99 -32.29 16 14 C 0.05 2.01 4.25 86.30 0.37 2.38 16 15 C 0.15 4.76 0.72 -10.79 -0.01 4.75 16 16 C -0.14 -3.61 6.98 71.98 0.50 -3.11 16 17 O -0.38 -13.20 10.20 -148.98 -1.52 -14.72 16 18 C 0.04 1.14 10.32 113.37 1.17 2.31 16 19 C -0.20 -5.18 3.95 -10.79 -0.04 -5.22 16 20 C -0.16 -3.17 9.80 30.61 0.30 -2.87 16 21 C -0.16 -3.23 9.57 30.61 0.29 -2.93 16 22 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.06 1.94 6.66 -2.39 -0.02 1.92 16 24 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.07 3.69 5.94 -2.39 -0.01 3.68 16 26 H 0.03 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 28 H 0.33 12.71 4.81 -89.69 -0.43 12.28 16 29 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 2.29 5.91 -2.39 -0.01 2.27 16 31 H 0.08 1.87 6.98 -2.39 -0.02 1.86 16 32 H 0.06 1.72 6.65 -2.38 -0.02 1.71 16 33 H 0.07 1.70 7.08 -2.39 -0.02 1.69 16 34 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 35 H 0.02 0.96 6.31 -2.39 -0.02 0.95 16 36 H 0.05 1.41 7.10 -2.39 -0.02 1.39 16 37 H 0.09 2.53 8.05 -2.39 -0.02 2.51 16 38 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.10 2.00 7.61 -2.39 -0.02 1.98 16 40 H 0.11 1.96 5.85 -2.39 -0.01 1.95 16 41 H 0.10 1.76 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -62.91 314.62 2.51 -60.40 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.56 Total: 24.05 kcal Atomic # 6 Polarization: -35.08 SS G_CDS: 4.19 Total: -30.89 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -2.75 Total: -85.83 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -1.52 Total: -14.72 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -62.91 2.51 -60.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308993666.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.629 kcal (2) G-P(sol) polarization free energy of solvation -62.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds