Wall clock time and date at job start Sun Mar 29 2020 22:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47415 * 2 1 4 4 C 1.53005 * 109.61133 * 303.79776 * 3 2 1 5 5 N 1.46900 * 109.47153 * 300.62128 * 4 3 2 6 6 C 1.46904 * 110.99920 * 185.41499 * 5 4 3 7 7 C 1.53000 * 109.46711 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46475 * 179.97438 * 7 6 5 9 9 H 1.08001 * 120.00468 * 0.02562 * 8 7 6 10 10 C 1.37883 * 119.99643 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00232 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00053 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47090 * 89.99963 * 12 10 8 14 14 H 1.48492 * 109.47194 * 210.00163 * 12 10 8 15 15 H 1.48505 * 109.46946 * 330.00109 * 12 10 8 16 16 C 1.53206 * 109.54301 * 183.58135 * 3 2 1 17 17 C 1.53086 * 109.14880 * 183.15041 * 16 3 2 18 18 O 1.42905 * 109.42319 * 57.61103 * 17 16 3 19 19 C 1.42903 * 114.09434 * 298.83067 * 18 17 16 20 20 C 1.53097 * 109.41654 * 61.15911 * 19 18 17 21 21 H 1.08997 * 109.47280 * 185.11835 * 1 2 3 22 22 H 1.08997 * 109.47231 * 305.12163 * 1 2 3 23 23 H 1.09003 * 109.46495 * 65.11999 * 1 2 3 24 24 H 1.09003 * 109.47616 * 239.99508 * 2 1 3 25 25 H 1.09004 * 109.46760 * 119.99716 * 2 1 3 26 26 H 1.09001 * 109.47019 * 60.62361 * 4 3 2 27 27 H 1.09006 * 109.46674 * 180.62234 * 4 3 2 28 28 H 1.00893 * 110.99990 * 61.45741 * 5 4 3 29 29 H 1.08991 * 109.47008 * 300.00134 * 6 5 4 30 30 H 1.09005 * 109.46674 * 60.00131 * 6 5 4 31 31 H 1.09001 * 109.47116 * 299.99593 * 7 6 5 32 32 H 1.08993 * 109.47270 * 60.00238 * 7 6 5 33 33 H 0.96996 * 120.00139 * 180.02562 * 11 10 8 34 34 H 1.09000 * 109.53217 * 63.24897 * 16 3 2 35 35 H 1.08994 * 109.52003 * 303.05398 * 16 3 2 36 36 H 1.08992 * 109.48989 * 297.61802 * 17 16 3 37 37 H 1.09004 * 109.47894 * 177.58920 * 17 16 3 38 38 H 1.09004 * 109.48099 * 181.14175 * 19 18 17 39 39 H 1.09001 * 109.47819 * 301.16601 * 19 18 17 40 40 H 1.08995 * 109.51983 * 62.29268 * 20 19 18 41 41 H 1.08999 * 109.52167 * 182.48703 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4554 2.1939 -1.1977 5 7 1.8563 1.5216 -2.4408 6 6 1.4211 2.2865 -3.6170 7 6 1.8564 1.5569 -4.8894 8 6 1.4093 2.3413 -6.0960 9 1 0.8692 3.2678 -5.9681 10 6 1.6908 1.8767 -7.3633 11 7 2.3489 0.7489 -7.5191 12 14 1.1374 2.8494 -8.8590 13 1 2.2005 3.8116 -9.2449 14 1 0.8790 1.9187 -9.9869 15 1 -0.1075 3.5912 -8.5342 16 6 3.5695 1.4452 -0.0902 17 6 4.0746 2.8882 -0.0103 18 8 3.6182 3.4848 1.2054 19 6 2.1957 3.5526 1.3239 20 6 1.6147 2.1364 1.2976 21 1 -0.3634 -1.0235 0.0917 22 1 -0.3633 0.5912 0.8405 23 1 -0.3632 0.4324 -0.9323 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 0.3679 2.2041 -1.1246 27 1 1.8290 3.2179 -1.2017 28 1 1.5017 0.5776 -2.4719 29 1 0.3355 2.3830 -3.6063 30 1 1.8743 3.2777 -3.5938 31 1 2.9421 1.4609 -4.8999 32 1 1.4037 0.5657 -4.9128 33 1 2.5473 0.4222 -8.4107 34 1 3.8795 1.0027 -1.0368 35 1 3.9841 0.8678 0.7360 36 1 3.6922 3.4548 -0.8591 37 1 5.1644 2.8934 -0.0308 38 1 1.9319 4.0363 2.2644 39 1 1.7887 4.1281 0.4924 40 1 1.9899 1.5729 2.1519 41 1 0.5269 2.1880 1.3434 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309000540.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:52 Heat of formation + Delta-G solvation = -73.875644 kcal Electronic energy + Delta-G solvation = -18255.569743 eV Core-core repulsion = 15555.259430 eV Total energy + Delta-G solvation = -2700.310314 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.14387 -36.74818 -34.65505 -32.65685 -31.17155 -30.76793 -29.31170 -25.78918 -24.90001 -23.73989 -22.96803 -21.56347 -20.55175 -18.19606 -16.38549 -16.28267 -15.93754 -15.51413 -15.00052 -14.68105 -14.42448 -14.11323 -13.78956 -13.51367 -12.91988 -12.64868 -12.25982 -12.15790 -11.94788 -11.82477 -11.55711 -11.22684 -11.14458 -10.93378 -10.79805 -10.69205 -10.51158 -10.22370 -10.06152 -9.93153 -9.34650 -9.27038 -9.14479 -8.35708 -7.78427 -6.00335 -4.02864 3.31655 3.37788 3.40815 3.95275 4.41793 4.56666 4.68086 4.82416 4.97593 5.09477 5.20595 5.28080 5.35736 5.35878 5.41483 5.49131 5.58513 5.72206 5.74440 5.75761 5.87646 5.93347 5.97059 6.10304 6.15402 6.21655 6.27267 6.34852 6.41896 6.43809 6.51204 6.97652 7.27623 7.48754 7.72818 7.82643 7.96326 8.08165 8.43330 9.04416 9.61005 11.11077 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032451 B = 0.004867 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.642419 B = 5752.036066 C = 6080.152061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.054 4.054 4 C 0.062 3.938 5 N -0.687 5.687 6 C 0.066 3.934 7 C 0.026 3.974 8 C -0.522 4.522 9 H 0.053 0.947 10 C 0.058 3.942 11 N -0.893 5.893 12 Si 0.892 3.108 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.275 1.275 16 C -0.135 4.135 17 C 0.059 3.941 18 O -0.389 6.389 19 C 0.059 3.941 20 C -0.145 4.145 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.026 0.974 27 H 0.067 0.933 28 H 0.335 0.665 29 H 0.013 0.987 30 H 0.056 0.944 31 H 0.025 0.975 32 H 0.013 0.987 33 H 0.260 0.740 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.346 1.037 17.774 17.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.055 4.055 4 C -0.068 4.068 5 N -0.319 5.319 6 C -0.062 4.062 7 C -0.011 4.011 8 C -0.561 4.561 9 H 0.072 0.928 10 C -0.143 4.143 11 N -0.533 5.533 12 Si 0.720 3.280 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.200 1.200 16 C -0.172 4.172 17 C -0.017 4.017 18 O -0.308 6.308 19 C -0.018 4.018 20 C -0.183 4.183 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.044 0.956 27 H 0.085 0.915 28 H 0.154 0.846 29 H 0.031 0.969 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.525 1.261 17.768 17.820 hybrid contribution -1.495 0.174 -1.142 1.890 sum -2.020 1.435 16.625 16.809 Atomic orbital electron populations 1.21879 0.96203 1.01352 1.01867 1.21556 0.95588 0.95778 1.02237 1.20605 0.95661 0.95326 0.93895 1.22083 0.96790 0.97989 0.89901 1.60588 1.64233 1.05799 1.01244 1.22139 0.96077 0.97469 0.90500 1.19053 0.97444 0.95165 0.89459 1.21180 1.36188 1.07654 0.91036 0.92835 1.24996 0.95212 0.95049 0.99049 1.69968 1.40295 1.20479 1.22511 0.86597 0.79029 0.79840 0.82542 1.20618 1.21216 1.19953 1.22105 0.94537 0.97346 1.03260 1.22624 0.99272 0.93215 0.86582 1.87880 1.21073 1.81416 1.40413 1.22566 0.81678 0.96006 1.01511 1.22281 1.01007 0.97033 0.98005 0.92954 0.92784 0.92557 0.90985 0.92273 0.95581 0.91513 0.84642 0.96886 0.92553 0.95676 0.96910 0.92997 0.89021 0.92200 0.92441 0.89302 0.89487 0.93123 0.91184 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.14 37.16 0.34 -1.32 16 2 C -0.11 -1.28 4.54 -26.73 -0.12 -1.40 16 3 C -0.05 -0.65 0.37 -154.31 -0.06 -0.70 16 4 C 0.06 0.87 3.62 -3.82 -0.01 0.86 16 5 N -0.69 -11.75 5.62 -113.77 -0.64 -12.39 16 6 C 0.07 1.38 5.61 -3.82 -0.02 1.36 16 7 C 0.03 0.68 5.23 -27.88 -0.15 0.53 16 8 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 9 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 12 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 C -0.13 -1.69 4.81 -26.58 -0.13 -1.82 16 17 C 0.06 0.76 6.57 37.20 0.24 1.01 16 18 O -0.39 -5.16 10.77 -35.23 -0.38 -5.54 16 19 C 0.06 0.65 6.57 37.21 0.24 0.90 16 20 C -0.15 -1.52 4.58 -26.59 -0.12 -1.64 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.05 0.52 6.38 -51.93 -0.33 0.19 16 23 H 0.06 0.67 6.69 -51.93 -0.35 0.33 16 24 H 0.07 0.89 6.91 -51.93 -0.36 0.53 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.03 0.37 6.53 -51.93 -0.34 0.03 16 27 H 0.07 0.98 4.99 -51.93 -0.26 0.72 16 28 H 0.34 5.64 7.10 -39.30 -0.28 5.36 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.09 1.29 7.55 -51.93 -0.39 0.89 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.80 6.59 -51.93 -0.34 0.46 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.57 6.61 -51.93 -0.34 0.23 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.69 6.60 -51.93 -0.34 0.34 16 LS Contribution 309.56 15.07 4.67 4.67 Total: -1.00 -29.70 309.56 -7.93 -37.63 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -7.10 Total: 0.95 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -0.19 Total: -15.80 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.10 Total: -38.59 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.38 Total: -5.54 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.70 -7.93 -37.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309000540.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.245 kcal (2) G-P(sol) polarization free energy of solvation -29.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds