Wall clock time and date at job start Sun Mar 29 2020 22:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47415 * 2 1 4 4 C 1.53005 * 109.61133 * 303.79776 * 3 2 1 5 5 N 1.46900 * 109.47153 * 300.62128 * 4 3 2 6 6 C 1.46904 * 110.99920 * 185.41499 * 5 4 3 7 7 C 1.53000 * 109.46711 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46475 * 179.97438 * 7 6 5 9 9 H 1.08001 * 120.00468 * 0.02562 * 8 7 6 10 10 C 1.37883 * 119.99643 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00232 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00053 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47090 * 89.99963 * 12 10 8 14 14 H 1.48492 * 109.47194 * 210.00163 * 12 10 8 15 15 H 1.48505 * 109.46946 * 330.00109 * 12 10 8 16 16 C 1.53206 * 109.54301 * 183.58135 * 3 2 1 17 17 C 1.53086 * 109.14880 * 183.15041 * 16 3 2 18 18 O 1.42905 * 109.42319 * 57.61103 * 17 16 3 19 19 C 1.42903 * 114.09434 * 298.83067 * 18 17 16 20 20 C 1.53097 * 109.41654 * 61.15911 * 19 18 17 21 21 H 1.08997 * 109.47280 * 185.11835 * 1 2 3 22 22 H 1.08997 * 109.47231 * 305.12163 * 1 2 3 23 23 H 1.09003 * 109.46495 * 65.11999 * 1 2 3 24 24 H 1.09003 * 109.47616 * 239.99508 * 2 1 3 25 25 H 1.09004 * 109.46760 * 119.99716 * 2 1 3 26 26 H 1.09001 * 109.47019 * 60.62361 * 4 3 2 27 27 H 1.09006 * 109.46674 * 180.62234 * 4 3 2 28 28 H 1.00893 * 110.99990 * 61.45741 * 5 4 3 29 29 H 1.08991 * 109.47008 * 300.00134 * 6 5 4 30 30 H 1.09005 * 109.46674 * 60.00131 * 6 5 4 31 31 H 1.09001 * 109.47116 * 299.99593 * 7 6 5 32 32 H 1.08993 * 109.47270 * 60.00238 * 7 6 5 33 33 H 0.96996 * 120.00139 * 180.02562 * 11 10 8 34 34 H 1.09000 * 109.53217 * 63.24897 * 16 3 2 35 35 H 1.08994 * 109.52003 * 303.05398 * 16 3 2 36 36 H 1.08992 * 109.48989 * 297.61802 * 17 16 3 37 37 H 1.09004 * 109.47894 * 177.58920 * 17 16 3 38 38 H 1.09004 * 109.48099 * 181.14175 * 19 18 17 39 39 H 1.09001 * 109.47819 * 301.16601 * 19 18 17 40 40 H 1.08995 * 109.51983 * 62.29268 * 20 19 18 41 41 H 1.08999 * 109.52167 * 182.48703 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4554 2.1939 -1.1977 5 7 1.8563 1.5216 -2.4408 6 6 1.4211 2.2865 -3.6170 7 6 1.8564 1.5569 -4.8894 8 6 1.4093 2.3413 -6.0960 9 1 0.8692 3.2678 -5.9681 10 6 1.6908 1.8767 -7.3633 11 7 2.3489 0.7489 -7.5191 12 14 1.1374 2.8494 -8.8590 13 1 2.2005 3.8116 -9.2449 14 1 0.8790 1.9187 -9.9869 15 1 -0.1075 3.5912 -8.5342 16 6 3.5695 1.4452 -0.0902 17 6 4.0746 2.8882 -0.0103 18 8 3.6182 3.4848 1.2054 19 6 2.1957 3.5526 1.3239 20 6 1.6147 2.1364 1.2976 21 1 -0.3634 -1.0235 0.0917 22 1 -0.3633 0.5912 0.8405 23 1 -0.3632 0.4324 -0.9323 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 0.3679 2.2041 -1.1246 27 1 1.8290 3.2179 -1.2017 28 1 1.5017 0.5776 -2.4719 29 1 0.3355 2.3830 -3.6063 30 1 1.8743 3.2777 -3.5938 31 1 2.9421 1.4609 -4.8999 32 1 1.4037 0.5657 -4.9128 33 1 2.5473 0.4222 -8.4107 34 1 3.8795 1.0027 -1.0368 35 1 3.9841 0.8678 0.7360 36 1 3.6922 3.4548 -0.8591 37 1 5.1644 2.8934 -0.0308 38 1 1.9319 4.0363 2.2644 39 1 1.7887 4.1281 0.4924 40 1 1.9899 1.5729 2.1519 41 1 0.5269 2.1880 1.3434 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309000540.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:52 Heat of formation + Delta-G solvation = -92.777146 kcal Electronic energy + Delta-G solvation = -18256.389374 eV Core-core repulsion = 15555.259430 eV Total energy + Delta-G solvation = -2701.129945 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.14693 -37.92016 -36.21237 -34.60659 -32.17195 -31.65231 -31.14490 -27.29648 -26.03136 -25.09707 -24.20111 -22.53804 -22.37956 -19.26815 -18.46415 -17.46750 -16.92688 -16.66548 -16.48151 -16.10909 -15.65012 -15.39134 -15.00051 -14.67392 -14.30582 -14.22365 -13.72996 -13.35571 -13.14212 -12.87233 -12.84285 -12.79180 -12.66191 -12.37824 -12.16669 -12.02072 -11.75982 -11.65260 -11.39030 -11.31102 -11.06959 -10.90071 -10.56956 -10.25210 -9.22341 -8.21020 -6.32458 1.39755 1.41210 1.52077 2.39860 3.02368 3.12526 3.33708 3.72251 3.84655 3.86965 4.17545 4.26983 4.32507 4.35858 4.48361 4.52307 4.56647 4.60937 4.65925 4.71940 4.80050 4.83956 4.90741 5.04231 5.06534 5.09349 5.18173 5.22179 5.28439 5.31958 5.42021 5.46724 5.54862 5.67632 5.78657 6.14524 6.29306 6.32074 6.55821 6.84867 7.36915 8.91066 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032451 B = 0.004867 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.642419 B = 5752.036066 C = 6080.152061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.050 4.050 4 C 0.066 3.934 5 N -0.688 5.688 6 C 0.086 3.914 7 C 0.034 3.966 8 C -0.545 4.545 9 H 0.058 0.942 10 C 0.002 3.998 11 N -0.931 5.931 12 Si 0.966 3.034 13 H -0.272 1.272 14 H -0.281 1.281 15 H -0.264 1.264 16 C -0.132 4.132 17 C 0.061 3.939 18 O -0.401 6.401 19 C 0.052 3.948 20 C -0.138 4.138 21 H 0.059 0.941 22 H 0.068 0.932 23 H 0.039 0.961 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.033 0.967 27 H 0.061 0.939 28 H 0.337 0.663 29 H 0.015 0.985 30 H 0.054 0.946 31 H -0.005 1.005 32 H -0.010 1.010 33 H 0.264 0.736 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.041 0.959 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.046 0.954 40 H 0.079 0.921 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.312 1.757 18.838 19.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.051 4.051 4 C -0.063 4.063 5 N -0.319 5.319 6 C -0.043 4.043 7 C -0.004 4.004 8 C -0.584 4.584 9 H 0.077 0.923 10 C -0.196 4.196 11 N -0.571 5.571 12 Si 0.790 3.210 13 H -0.198 1.198 14 H -0.206 1.206 15 H -0.188 1.188 16 C -0.169 4.169 17 C -0.016 4.016 18 O -0.320 6.320 19 C -0.024 4.024 20 C -0.176 4.176 21 H 0.078 0.922 22 H 0.087 0.913 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.092 0.908 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.156 0.844 29 H 0.033 0.967 30 H 0.072 0.928 31 H 0.013 0.987 32 H 0.009 0.991 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.114 0.886 38 H 0.127 0.873 39 H 0.064 0.936 40 H 0.098 0.902 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.496 1.986 18.855 19.018 hybrid contribution -1.172 -0.074 -1.426 1.847 sum -2.668 1.912 17.429 17.735 Atomic orbital electron populations 1.21853 0.95512 1.02064 1.01562 1.21534 0.96135 0.95123 1.02163 1.20577 0.95036 0.95727 0.93725 1.22122 0.97291 0.97755 0.89149 1.60489 1.64380 1.05737 1.01322 1.21738 0.95878 0.96872 0.89850 1.18894 0.95184 0.94495 0.91789 1.21613 1.36411 1.08115 0.92241 0.92329 1.25954 0.95070 0.96057 1.02513 1.70100 1.41340 1.22171 1.23493 0.85439 0.78981 0.78355 0.78211 1.19772 1.20642 1.18782 1.22052 0.95160 0.97137 1.02597 1.22584 0.99761 0.93093 0.86143 1.87867 1.22489 1.81473 1.40172 1.22767 0.80573 0.96568 1.02494 1.22240 1.01904 0.96448 0.97006 0.92154 0.91322 0.94199 0.92606 0.90821 0.94886 0.92032 0.84412 0.96718 0.92787 0.98703 0.99140 0.92733 0.90965 0.91149 0.94040 0.88602 0.87313 0.93612 0.90223 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.14 71.98 0.66 -2.29 16 2 C -0.11 -2.34 4.54 30.59 0.14 -2.20 16 3 C -0.05 -1.12 0.37 -52.05 -0.02 -1.14 16 4 C 0.07 1.80 3.62 86.30 0.31 2.11 16 5 N -0.69 -23.76 5.62 -513.86 -2.89 -26.65 16 6 C 0.09 3.62 5.61 86.30 0.48 4.10 16 7 C 0.03 1.82 5.23 29.85 0.16 1.97 16 8 C -0.55 -31.40 9.11 25.60 0.23 -31.16 16 9 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 10 C 0.00 0.12 5.46 84.66 0.46 0.58 16 11 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 12 Si 0.97 44.46 29.54 68.60 2.03 46.48 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 14 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 15 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 16 C -0.13 -3.20 4.81 30.69 0.15 -3.06 16 17 C 0.06 1.53 6.57 72.01 0.47 2.00 16 18 O -0.40 -10.03 10.77 -148.98 -1.60 -11.64 16 19 C 0.05 1.04 6.57 72.01 0.47 1.51 16 20 C -0.14 -2.52 4.58 30.69 0.14 -2.38 16 21 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.07 1.12 6.38 -2.39 -0.02 1.11 16 23 H 0.04 0.90 6.69 -2.39 -0.02 0.88 16 24 H 0.06 1.35 6.91 -2.39 -0.02 1.34 16 25 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.03 0.88 6.53 -2.39 -0.02 0.86 16 27 H 0.06 1.77 4.99 -2.38 -0.01 1.76 16 28 H 0.34 11.54 7.10 -89.70 -0.64 10.90 16 29 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 31 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.07 2.04 7.55 -2.39 -0.02 2.03 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.04 1.16 6.59 -2.39 -0.02 1.15 16 37 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.05 0.96 6.61 -2.39 -0.02 0.94 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.09 1.36 6.60 -2.39 -0.02 1.34 16 Total: -1.00 -63.62 309.56 1.84 -61.79 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.36 Total: 16.79 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 3.66 Total: -29.95 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -2.60 Total: -83.46 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -1.60 Total: -11.64 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -63.62 1.84 -61.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309000540.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.989 kcal (2) G-P(sol) polarization free energy of solvation -63.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds